Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1899.4 945 100.0
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 1857.0 944 97.9
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 1852.8 944 97.7
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1745.3 944 91.7
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1652.9 944 87.1
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 1511.1 946 77.7
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 1503.0 944 77.3
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 1496.1 950 77.6
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1490.7 996 74.5
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1490.3 945 76.6
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1490.3 944 76.6
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 1489.6 944 77.1
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 1488.0 944 77.1
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1486.5 944 76.1
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 1483.8 960 74.9
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 1483.0 944 76.0
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 1481.8 944 76.0
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1470.7 946 76.1
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1468.8 972 74.2
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 1464.1 950 75.5
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1463.7 946 75.5
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1458.7 946 75.9
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 1456.4 945 75.1
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1454.1 944 74.3
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1453.7 944 74.5
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1448.3 775 92.3
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 1448.0 945 75.2
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1444.9 947 74.2
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 1442.6 947 74.2
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1442.2 947 74.1
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1441.4 947 74.1
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1438.7 947 74.1
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 1435.2 947 74.0
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 1435.2 949 74.7
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1434.5 944 73.8
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 1429.5 944 72.8
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 1422.5 945 73.3
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 1420.2 995 70.6
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 1418.7 945 73.4
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1417.1 944 73.0
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 1417.1 944 73.4
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 1415.6 944 73.3
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1412.5 945 72.6
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1409.4 944 72.8
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1407.9 945 72.0
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 1405.6 944 71.9
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1403.7 945 72.9
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 1403.3 945 71.9
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 1403.3 947 72.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 1402.1 944 73.1
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1397.1 945 72.2
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 1395.9 891 76.3
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1394.8 945 71.3
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 1394.4 947 73.1
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 1393.3 944 71.2
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1391.7 945 72.9
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 1389.4 948 72.8
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 1389.0 948 71.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 1389.0 945 70.9
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 1387.1 945 72.4
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1386.3 945 71.5
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 1383.6 945 71.0
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1382.9 945 71.9
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 1380.2 945 72.0
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 1379.8 945 71.5
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 1377.8 945 71.6
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 1377.5 944 70.3
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1375.5 945 71.3
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 1375.1 945 72.0
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 1375.1 944 70.7
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 1374.0 944 70.3
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 1372.5 945 71.3
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 1371.7 948 71.8
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 1371.3 945 71.1
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 1367.8 945 70.9
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 1366.3 948 71.9
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1363.6 903 73.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 1361.7 945 70.7
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 1355.1 948 71.2
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 1354.0 944 70.3
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 1349.7 944 70.1
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 1343.9 1027 65.5
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1342.8 969 69.9
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 1341.6 947 69.0
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1341.6 959 74.6
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 1333.2 947 70.9
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 1330.1 890 72.2
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1327.0 944 69.1
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 1326.6 944 68.4
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 1310.4 868 74.2
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 1307.4 945 69.0
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 1298.1 947 67.8
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 1293.5 901 71.9
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 1259.2 923 67.7
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 1255.4 949 66.1
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 1248.0 1073 60.3
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 1226.5 962 64.9
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 1211.1 802 74.1
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 1208.7 956 63.3
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 1207.6 944 64.5
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 1124.4 952 59.6
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 1104.0 750 72.0
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 7.3e-306 1053.9 690 74.9
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 2.4e-296 1022.3 722 70.2
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 1.5e-258 896.7 944 51.5
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.7e-244 849.4 693 60.5
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 1.0e-222 777.7 970 43.3
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.0e-222 777.7 957 42.9
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 7.2e-221 771.5 975 43.6
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 1.7e-206 723.8 972 40.7
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 3.6e-204 716.1 965 41.0
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 6.0e-199 698.7 987 39.9
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 5.8e-194 682.2 575 60.5
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 5.8e-194 682.2 960 40.9
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 3.5e-191 672.9 441 72.8
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.8e-187 660.6 1019 37.6
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 8.4e-169 598.6 952 37.4
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 3.5e-130 470.3 568 48.6
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 6.7e-126 456.1 640 44.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.8e-115 421.4 402 52.0
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 2.0e-114 417.9 322 62.7
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.6e-106 391.7 302 67.2
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.3e-105 388.7 221 82.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.7e-97 361.7 252 76.2
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.2e-82 312.4 225 68.4
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.4e-78 298.9 359 51.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.2e-74 285.8 168 79.8
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 1.2e-71 275.8 345 46.7
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 3.2e-67 261.2 969 25.2
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 2.1e-50 205.3 871 23.8
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.5e-29 136.0 647 24.3
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 2.4e-22 112.1 845 20.7
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 1.1e-19 103.2 65 80.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.6e-18 99.4 53 81.1
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 4.7e-18 97.8 67 77.6
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 6.5e-12 77.4 62 58.1


User provided reference genes

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