Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1822.8 1006 100.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 0.0e+00 1563.1 1010 88.0
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 0.0e+00 1530.0 1006 86.8
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 0.0e+00 1269.2 1038 71.7
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 0.0e+00 1106.3 1031 66.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 0.0e+00 1104.4 1055 65.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1095.5 697 91.4
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.0e-97 359.8 1076 34.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 5.0e-95 353.6 1104 34.6
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 4.2e-94 350.5 1136 31.9
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.3e-90 339.0 1036 33.3
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 5.9e-88 330.1 1150 32.9
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.9e-82 311.2 1116 30.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.0e-79 302.8 1191 31.3
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.3e-76 291.6 1131 30.6
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.1e-76 291.2 1238 29.2
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.0e-75 288.5 1112 31.6
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 9.8e-75 286.2 1097 31.0
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.3e-74 285.8 1036 32.5
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.4e-74 283.5 1236 30.3
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 7.0e-73 280.0 1078 32.0
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.0e-72 278.5 1234 29.7
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 6.6e-71 273.5 1119 30.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.5e-70 272.3 1099 30.5
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.3e-70 270.8 1102 29.7
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 9.5e-70 269.6 1104 29.4
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.2e-69 269.2 1103 29.5
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.6e-69 267.7 1142 29.9
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 4.7e-69 267.3 1225 30.2
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.8e-68 265.4 1087 30.0
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.3e-68 265.0 1152 28.8
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 3.1e-68 264.6 1152 29.4
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.5e-67 262.3 1057 30.2
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 5.8e-67 260.4 1089 31.1
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 9.8e-67 259.6 1104 30.0
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 5.4e-65 253.8 1230 28.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.7e-64 251.5 1138 28.5
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.3e-63 249.2 1069 29.7
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 3.0e-63 248.1 1047 29.1
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.0e-63 248.1 1109 28.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 1.1e-62 246.1 1076 29.0
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.2e-61 242.7 1063 29.2
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.1e-61 241.9 1049 30.1
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.1e-61 241.9 1122 28.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 8.9e-60 236.5 273 57.1
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 1.2e-59 236.1 1310 27.2
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 9.9e-59 233.0 1108 26.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.9e-59 233.0 1264 28.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.3e-58 232.6 220 63.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.1e-57 227.6 1062 29.4
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.1e-55 220.7 1033 28.9
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 4.3e-54 217.6 277 50.9
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 5.6e-54 217.2 1087 27.8
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.2e-53 216.1 1083 28.9
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.4e-52 212.6 1136 27.6
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.4e-52 212.6 1043 27.9
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.0e-51 208.8 1021 29.0
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 7.6e-51 206.8 1129 28.3
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.4e-50 203.8 278 52.2
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.0e-48 197.2 283 49.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.9e-47 194.5 1048 28.0
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 8.7e-47 193.4 806 29.3
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.5e-46 191.8 1070 27.1
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.5e-46 191.8 267 48.7
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.5e-46 191.8 1078 26.7
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.3e-46 191.0 1053 27.9
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.3e-46 191.0 1056 27.7
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 5.6e-46 190.7 262 48.9
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.3e-45 189.5 1047 26.5
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.6e-45 189.1 1054 26.0
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 3.6e-45 188.0 1018 26.3
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.6e-45 188.0 399 39.1
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 9.0e-44 183.3 761 29.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 4.5e-43 181.0 988 27.1
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 3.5e-40 171.4 939 26.8
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.3e-39 169.5 258 48.1
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.8e-39 169.1 1050 27.1
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.7e-37 161.4 1120 25.9
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.8e-37 161.0 1043 25.1
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.4e-36 159.5 560 33.2
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 6.9e-36 157.1 1070 26.6
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 7.6e-35 153.7 266 43.2
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 6.4e-34 150.6 170 55.9
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 6.4e-34 150.6 1048 25.1
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.1e-33 149.8 1031 25.5
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 7.1e-33 147.1 1008 24.5
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 6.7e-31 140.6 1204 23.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-28 132.9 997 26.3
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.4e-28 132.1 997 25.5
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 5.3e-28 131.0 263 39.2
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-27 129.4 1010 25.0
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.0e-26 126.7 259 40.5
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 2.9e-26 125.2 133 53.4
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 4.9e-26 124.4 869 25.1
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.1e-23 114.4 152 48.0
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.1e-22 113.2 287 32.8
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 3.3e-22 111.7 1014 24.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.3e-22 111.3 1000 24.5
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 5.7e-22 110.9 127 54.3
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 5.7e-22 110.9 404 29.2
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.3e-21 109.8 145 44.8
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 6.3e-21 107.5 1011 24.4
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.1e-20 104.8 992 24.4
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 5.3e-20 104.4 224 41.1
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.9e-18 98.6 123 46.3
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 8.5e-18 97.1 116 50.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 1.1e-17 96.7 154 39.0
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.4e-17 96.3 453 26.3
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 2.5e-17 95.5 154 38.3
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 2.5e-17 95.5 1015 25.1
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.2e-17 95.1 135 40.7
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.2e-17 94.7 446 29.1
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 7.2e-17 94.0 150 40.0
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.3e-15 89.7 79 55.7
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.1e-14 86.7 1014 23.5
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.5e-14 85.5 1065 24.1
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 4.3e-14 84.7 68 54.4
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.8e-13 82.0 1046 24.2
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.1e-12 80.1 281 30.6
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 1.4e-12 79.7 1041 22.6
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.8e-12 79.3 102 43.1
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.4e-12 79.0 1043 22.6
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 5.3e-12 77.8 102 44.1
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 3.4e-11 75.1 102 43.1
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 3.4e-11 75.1 108 40.7
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 3.4e-11 75.1 102 43.1
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.0e-10 73.6 152 39.5
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 3.2e-09 68.6 59 54.2
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 1.2e-08 66.6 506 25.3
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.6e-08 66.2 115 39.1
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.1e-08 65.9 1016 22.9
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 3.6e-08 65.1 59 61.0
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 7.9e-08 63.9 1014 22.3
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.8e-07 62.8 82 37.8
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 3.0e-07 62.0 1018 21.8
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.3e-06 58.5 1024 21.6
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 4.4e-06 58.2 403 26.6
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 5.7e-06 57.8 579 24.7
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 7.4e-06 57.4 180 29.4
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 7.4e-06 57.4 31 67.7
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 9.7e-06 57.0 36 55.6


User provided reference genes

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