Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401021786 Solanum tuberosum HOM05D008291 ORTHO05D012653 7.6e-107 390.6 208 100.0
PGSC0003DMG400018828 Solanum tuberosum HOM05D008291 ORTHO05D012653 2.3e-71 272.7 221 72.9
PGSC0003DMG400037196 Solanum tuberosum HOM05D008291 ORTHO05D012653 3.8e-58 228.8 196 68.9
Solyc12g038430.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 2.3e-55 219.5 216 61.1
Sopen05g010220 Solanum pennellii HOM05D008291 ORTHO05D012653 3.4e-54 215.7 209 62.2
Sopen10g007560 Solanum pennellii HOM05D008291 ORTHO05D016169 1.1e-52 210.7 207 61.4
CAN.G485.13 Capsicum annuum HOM05D008291 ORTHO05D012653 1.4e-52 210.3 156 73.1
Solyc09g005280.3 Solanum lycopersicum HOM05D008291 ORTHO05D000669 6.6e-42 174.9 206 52.9
Sopen09g001250 Solanum pennellii HOM05D008291 ORTHO05D000669 6.6e-42 174.9 206 52.4
Sopen03g016170 Solanum pennellii HOM05D008291 ORTHO05D016169 1.4e-36 157.1 198 50.0
Sopen09g022380 Solanum pennellii HOM05D008291 ORTHO05D000669 4.9e-29 132.1 68 89.7
Solyc12g082720.1 Solanum lycopersicum HOM05D008291 ORTHO05D003568 4.2e-28 129.0 68 88.2
Solyc12g082730.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 3.1e-23 112.8 81 81.5
Solyc04g026080.3 Solanum lycopersicum HOM05D008291 ORTHO05D012653 1.2e-22 110.9 78 83.3
CAN.G987.2 Capsicum annuum HOM05D008291 ORTHO05D012653 7.8e-19 98.2 80 71.2
CAN.G405.11 Capsicum annuum HOM05D000062 ORTHO05D000043 2.8e-16 89.7 49 85.7
CAN.G631.65 Capsicum annuum HOM05D000653 ORTHO05D012653 5.3e-15 85.5 74 67.6
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 5.8e-14 82.0 87 44.8
Medtr0009s0330 Medicago truncatula HOM05D008291 ORTHO05D003568 2.9e-13 79.7 100 41.0
Ca_17856_v3 Cicer arietinum L. HOM05D008291 ORTHO05D003568 1.9e-12 77.0 82 47.6
Glyma.05G165700 Glycine max HOM05D008291 ORTHO05D000669 4.2e-12 75.9 238 29.4
TPR.G21602 Trifolium pratense HOM05D008291 ORTHO05D003568 4.2e-12 75.9 82 43.9
Glyma.08G123400 Glycine max HOM05D008291 ORTHO05D000669 2.1e-11 73.6 235 29.8
Phvul.002G246000 Phaseolus vulgaris HOM05D008291 ORTHO05D003568 3.5e-11 72.8 243 30.0
Sopen08g014000 Solanum pennellii HOM05D000004 ORTHO05D000002 4.6e-11 72.4 44 88.6
arahy.Tifrunner.gnm1.ann1.EW3BSR Arachis hypogaea HOM05D008291 ORTHO05D000669 1.8e-10 70.5 231 28.1
arahy.Tifrunner.gnm1.ann1.TSWN09 Arachis hypogaea HOM05D008291 ORTHO05D000669 1.8e-10 70.5 231 28.1
TPR.G6754 Trifolium pratense HOM05D008291 ORTHO05D003568 1.8e-10 70.5 82 42.7
Lj1g0021760 Lotus japonicus HOM05D008291 ORTHO05D003568 3.9e-10 69.3 68 44.1
PGSC0003DMG400046599 Solanum tuberosum HOM05D008291 ORTHO05D012653 5.1e-10 68.9 64 67.2
VMungo0251G2604 Vigna mungo HOM05D008291 ORTHO05D003568 2.8e-08 63.2 248 26.2
TWI23G0253 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 3.7e-08 62.8 183 27.9
TWI18G1095 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 6.2e-08 62.0 74 40.5
TWI36G1730 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 6.2e-08 62.0 74 40.5
TWI73G1228 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 6.2e-08 62.0 74 40.5
AUR62031247 Chenopodium quinoa HOM05D008455 ORTHO05D009597 8.1e-08 61.6 79 36.7
Lj4g0027394 Lotus japonicus HOM05D008291 ORTHO05D003568 8.1e-08 61.6 83 38.6
PGSC0003DMG402013972 Solanum tuberosum HOM05D003120 ORTHO05D003568 2.4e-07 60.1 150 28.7
TWI59G0531 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 2.4e-07 60.1 74 40.5
AUR62039826 Chenopodium quinoa HOM05D008455 ORTHO05D009597 3.4e-06 56.2 79 36.7
Nitab4.5_0000765g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 9.9e-06 54.7 162 27.8


User provided reference genes

Program Settings