Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 3.6e-123 444.9 220 100.0
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 2.2e-43 179.9 85 95.3
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.7e-40 170.2 84 92.9
Nitab4.5_0000117g0170 Nicotiana tabacum HOM05D024157 ORTHO05D025896 7.0e-34 148.3 132 63.6
Sopen01g025340 Solanum pennellii HOM05D024157 ORTHO05D025896 4.5e-33 145.6 84 91.7
Solyc01g056730.3 Solanum lycopersicum HOM05D024157 ORTHO05D025896 3.2e-31 139.4 87 85.1
Nitab4.5_0002595g0040 Nicotiana tabacum HOM05D024157 ORTHO05D025896 5.7e-20 102.1 136 48.5
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 2.6e-12 76.6 93 45.2
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.3e-11 74.3 107 39.3
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 1.3e-11 74.3 105 38.1
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.3e-11 74.3 66 51.5
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 1.7e-11 73.9 104 40.4
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 1.7e-11 73.9 62 53.2
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.7e-11 73.9 93 44.1
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 2.2e-11 73.6 81 42.0
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.9e-11 73.2 113 40.7
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.9e-11 73.2 73 45.2
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 6.4e-11 72.0 90 41.1
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 8.3e-11 71.6 187 27.3
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 8.3e-11 71.6 60 53.3
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-10 71.2 141 29.8
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.1e-10 71.2 141 29.8
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.1e-10 71.2 97 42.3
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.4e-10 70.9 93 41.9
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.4e-10 70.9 90 40.0
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.9e-10 70.5 96 35.4
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 1.9e-10 70.5 97 39.2
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 1.9e-10 70.5 66 47.0
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 3.2e-10 69.7 62 48.4
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 3.2e-10 69.7 72 44.4
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 3.2e-10 69.7 97 41.2
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 3.2e-10 69.7 133 32.3
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 3.2e-10 69.7 62 50.0
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 4.1e-10 69.3 156 29.5
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 5.4e-10 68.9 131 31.3
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 5.4e-10 68.9 108 37.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 5.4e-10 68.9 63 50.8
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 5.4e-10 68.9 94 36.2
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 7.0e-10 68.6 62 46.8
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 7.0e-10 68.6 97 38.1
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 7.0e-10 68.6 66 47.0
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.2e-10 68.2 141 29.1
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 9.2e-10 68.2 104 37.5
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 9.2e-10 68.2 66 45.5
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 9.2e-10 68.2 63 49.2
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.2e-09 67.8 134 34.3
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.6e-09 67.4 117 35.9
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.6e-09 67.4 71 43.7
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 1.6e-09 67.4 97 39.2
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.6e-09 67.4 158 29.1
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 2.0e-09 67.0 175 29.1
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 2.0e-09 67.0 72 43.1
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.0e-09 67.0 94 36.2
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 2.0e-09 67.0 94 36.2
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 2.7e-09 66.6 80 40.0
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.7e-09 66.6 75 44.0
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 2.7e-09 66.6 100 36.0
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 2.7e-09 66.6 62 48.4
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.5e-09 66.2 95 36.8
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 3.5e-09 66.2 66 42.4
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 3.5e-09 66.2 93 39.8
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 3.5e-09 66.2 157 30.6
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 4.6e-09 65.9 58 50.0
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 4.6e-09 65.9 65 47.7
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 6.0e-09 65.5 99 37.4
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 6.0e-09 65.5 66 43.9
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 7.8e-09 65.1 96 37.5
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 7.8e-09 65.1 96 35.4
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 7.8e-09 65.1 181 26.5
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 1.0e-08 64.7 106 30.2
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-08 64.7 66 43.9
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.3e-08 64.3 93 39.8
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.3e-08 64.3 167 29.9
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.3e-08 64.3 103 36.9
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 2.3e-08 63.5 60 50.0
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.3e-08 63.5 67 40.3
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 2.3e-08 63.5 103 36.9
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 3.9e-08 62.8 81 42.0
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 5.0e-08 62.4 101 36.6
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.0e-08 62.4 166 29.5
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 5.0e-08 62.4 72 40.3
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 6.6e-08 62.0 62 43.5
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 6.6e-08 62.0 62 43.5
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 6.6e-08 62.0 105 37.1
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 6.6e-08 62.0 111 36.9
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 6.6e-08 62.0 176 30.1
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.1e-07 61.2 62 43.5
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.1e-07 61.2 62 43.5
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.1e-07 61.2 128 32.8
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.5e-07 60.8 71 38.0
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.5e-07 60.8 109 33.0
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.5e-07 60.8 180 27.2
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.9e-07 60.5 56 46.4
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.9e-07 60.5 67 44.8
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.9e-07 60.5 67 44.8
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.9e-07 60.5 100 35.0
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 2.5e-07 60.1 96 36.5
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 2.5e-07 60.1 214 28.5
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 3.3e-07 59.7 155 27.7
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 3.3e-07 59.7 54 44.4
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 4.3e-07 59.3 64 42.2
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 4.3e-07 59.3 70 41.4
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 7.3e-07 58.5 119 29.4
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 7.3e-07 58.5 170 28.8
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 9.5e-07 58.2 97 32.0
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 1.2e-06 57.8 67 40.3
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.1e-06 57.0 96 34.4
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 2.1e-06 57.0 111 35.1
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 6.2e-06 55.5 82 35.4
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 6.2e-06 55.5 144 31.2
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 8.1e-06 55.1 82 36.6


User provided reference genes

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