Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401020927 Solanum tuberosum HOM05D004434 ORTHO05D000365 2.8e-41 171.4 80 100.0
Solyc10g018510.2 Solanum lycopersicum HOM05D004434 ORTHO05D000365 1.3e-22 109.4 82 72.0
Sopen10g008180 Solanum pennellii HOM05D004434 ORTHO05D000365 5.0e-22 107.5 81 66.7
Dinv43662 Davidia involucrata HOM05D004434 ORTHO05D000365 6.7e-19 97.1 76 67.1
Migut.B01581 Erythranthe guttata HOM05D004434 ORTHO05D000365 7.4e-18 93.6 81 64.2
Nitab4.5_0000475g0100 Nicotiana tabacum HOM05D004434 ORTHO05D000365 1.7e-17 92.4 80 62.5
Oeu061521.1 Olea europaea HOM05D004434 ORTHO05D000365 2.2e-17 92.0 73 67.1
MSTRG.28172 Avicennia marina HOM05D004434 ORTHO05D000365 2.8e-17 91.7 80 61.2
Thecc.01G385200 Theobroma cacao HOM05D004434 ORTHO05D000365 4.8e-17 90.9 74 64.9
COL.COLO4_12473 Corchorus olitorius HOM05D004434 ORTHO05D000365 6.3e-17 90.5 76 63.2
Hma1.2p1_0301F.1_g118230 Hydrangea macrophylla HOM05D004434 ORTHO05D000365 9.1e-16 86.7 72 63.9
Potri.014G066500 Populus trichocarpa HOM05D004434 ORTHO05D000365 9.1e-16 86.7 59 71.2
MSTRG.20724 Avicennia marina HOM05D004434 ORTHO05D000365 1.6e-15 85.9 71 64.8
Sabra14G0046500 Salix brachista HOM05D004434 ORTHO05D000365 2.0e-15 85.5 81 58.0
Actinidia12177 Actinidia chinensis HOM05D004434 ORTHO05D000365 3.5e-15 84.7 74 63.5
Manes.01G269700 Manihot esculenta HOM05D004434 ORTHO05D000365 4.5e-15 84.3 57 70.2
Peaxi162Scf00441g00317 Petunia axillaris HOM05D004434 ORTHO05D000365 4.5e-15 84.3 83 60.2
Dinv44112 Davidia involucrata HOM05D004434 ORTHO05D000365 1.0e-14 83.2 73 64.4
Oeu000035.2 Olea europaea HOM05D004434 ORTHO05D000365 1.0e-14 83.2 76 59.2
GSVIVG01018164001 Vitis vinifera HOM05D004434 ORTHO05D000365 3.8e-14 81.3 74 58.1
TWI14G0925 Tripterygium wilfordii HOM05D004434 ORTHO05D000365 5.0e-14 80.9 73 56.2
Nitab4.5_0000706g0090 Nicotiana tabacum HOM05D004434 ORTHO05D000365 6.5e-14 80.5 81 53.1
Duzib133G0507 Durio zibethinus HOM05D004434 ORTHO05D000365 8.5e-14 80.1 74 59.5
Nitab4.5_0001026g0100 Nicotiana tabacum HOM05D004434 ORTHO05D000365 8.5e-14 80.1 81 53.1
Gohir.A11G078200 Gossypium hirsutum HOM05D004434 ORTHO05D000365 1.1e-13 79.7 58 70.7
Gohir.D11G082600 Gossypium hirsutum HOM05D004434 ORTHO05D000365 1.1e-13 79.7 58 70.7
Gorai.007G088300 Gossypium raimondii HOM05D004434 ORTHO05D000365 1.1e-13 79.7 58 70.7
Sabra02G0111700 Salix brachista HOM05D004434 ORTHO05D000365 1.1e-13 79.7 59 66.1
CANSAT21G1995 Cannabis sativa HOM05D004434 ORTHO05D000365 1.9e-13 79.0 59 66.1
MD07G1113200 Malus domestica HOM05D004434 ORTHO05D000365 1.9e-13 79.0 59 69.5
Haze_02718 Corylus avellana HOM05D004434 ORTHO05D000365 2.5e-13 78.6 74 59.5
Potri.002G143300 Populus trichocarpa HOM05D004434 ORTHO05D000365 3.2e-13 78.2 59 66.1
Manes.05G049900 Manihot esculenta HOM05D004434 ORTHO05D000365 5.5e-13 77.4 59 66.1
Ciclev10020053m.g Citrus clementina HOM05D004434 ORTHO05D000365 9.4e-13 76.6 60 65.0
MSTRG.4915 Avicennia marina HOM05D004434 ORTHO05D000365 1.6e-12 75.9 60 66.7
MBI04_g09506_MAGBIO Magnolia biondii HOM05D004434 ORTHO05D000365 1.6e-12 75.9 59 69.5
Rhsim07G0032300 Rhododendron simsii HOM05D004434 ORTHO05D000365 2.7e-12 75.1 71 57.7
QL04p037370 Quercus lobata HOM05D000017 ORTHO05D000013 3.6e-12 74.7 70 60.0
QL11p032217 Quercus lobata HOM05D000017 ORTHO05D000013 3.6e-12 74.7 70 60.0
AUR62004153 Chenopodium quinoa HOM05D004434 ORTHO05D000365 4.7e-12 74.3 83 48.2
SalBow5G5153 Salvia bowleyana HOM05D004434 ORTHO05D000365 4.7e-12 74.3 59 64.4
Eucgr.D02499 Eucalyptus grandis HOM05D004434 ORTHO05D000365 8.0e-12 73.6 67 59.7
Prupe.2G136300 Prunus persica HOM05D004434 ORTHO05D000365 1.0e-11 73.2 84 52.4
CSS0014185 Camellia sinensis var. sinensis HOM05D004434 ORTHO05D000365 1.4e-11 72.8 59 64.4
Cc02_g24640 Coffea canephora HOM05D004434 ORTHO05D000365 1.4e-11 72.8 81 51.9
Solyc01g090790.4 Solanum lycopersicum HOM05D004434 ORTHO05D000365 1.4e-11 72.8 66 56.1
Sopen01g036520 Solanum pennellii HOM05D004434 ORTHO05D000365 1.4e-11 72.8 66 56.1
CiPaw.13G031500 Carya illinoinensis HOM05D004434 ORTHO05D000365 1.8e-11 72.4 79 53.2
Lsat_1_v5_gn_3_129041 Lactuca sativa HOM05D004434 ORTHO05D000365 1.8e-11 72.4 59 67.8
Peaxi162Scf00273g00613 Petunia axillaris HOM05D004434 ORTHO05D000365 1.8e-11 72.4 81 58.0
TPR.G39043 Trifolium pratense HOM05D004434 ORTHO05D000365 1.8e-11 72.4 76 55.3
VMungo1383G3194 Vigna mungo HOM05D004434 ORTHO05D000365 2.3e-11 72.0 75 60.0
EL10Ac1g00826 Beta vulgaris HOM05D004434 ORTHO05D000365 3.0e-11 71.6 83 48.2
Lj9C564T0 Lonicera japonica HOM05D004434 ORTHO05D000365 3.0e-11 71.6 70 60.0
FAN10G0381 Fragaria x ananassa HOM05D004434 ORTHO05D000365 5.2e-11 70.9 65 58.5
FAN10G1781 Fragaria x ananassa HOM05D004434 ORTHO05D000365 5.2e-11 70.9 65 58.5
Glyma.11G166128 Glycine max HOM05D004434 ORTHO05D000365 5.2e-11 70.9 74 58.1
Phvul.008G144300 Phaseolus vulgaris HOM05D004434 ORTHO05D000365 5.2e-11 70.9 75 58.7
QL04p035929 Quercus lobata HOM05D004434 ORTHO05D000365 5.2e-11 70.9 78 53.8
vmacro13455 Vaccinium macrocarpon HOM05D004434 ORTHO05D000365 5.2e-11 70.9 59 64.4
FvH4_7g10840 Fragaria vesca HOM05D004434 ORTHO05D000365 6.7e-11 70.5 64 59.4
FAN01G2954 Fragaria x ananassa HOM05D004434 ORTHO05D000365 6.7e-11 70.5 64 59.4
Duzib138G1022 Durio zibethinus HOM05D004434 ORTHO05D000365 8.8e-11 70.1 74 51.4
Glyma.01G076900 Glycine max HOM05D004434 ORTHO05D000365 8.8e-11 70.1 75 56.0
Ah.05g173670 Amaranthus hybridus HOM05D004434 ORTHO05D000365 1.1e-10 69.7 84 46.4
AUR62013694 Chenopodium quinoa HOM05D004434 ORTHO05D000365 1.1e-10 69.7 83 45.8
Gohir.A12G095500 Gossypium hirsutum HOM05D004434 ORTHO05D000365 1.1e-10 69.7 75 52.0
Ca_27604_v3 Cicer arietinum L. HOM05D004434 ORTHO05D000365 1.5e-10 69.3 74 55.4
PGSC0003DMG400025976 Solanum tuberosum HOM05D004434 ORTHO05D000365 1.5e-10 69.3 63 55.6
RcHm_v2.0_Chr1g0348781 Rosa chinensis HOM05D004434 ORTHO05D000365 2.0e-10 68.9 58 62.1
Sp6g00110 Schrenkiella parvula HOM05D004434 ORTHO05D000365 2.0e-10 68.9 65 55.4
AT4G00050 Arabidopsis thaliana HOM05D004434 ORTHO05D000365 2.6e-10 68.6 65 56.9
Carub.0006s3717 Capsella rubella HOM05D004434 ORTHO05D000365 2.6e-10 68.6 65 56.9
Cpa.g.sc212.4 Carica papaya HOM05D004434 ORTHO05D000365 2.6e-10 68.6 65 55.4
Medtr7g039110 Medicago truncatula HOM05D004434 ORTHO05D000365 2.6e-10 68.6 76 53.9
Psat3g156680 Pisum sativum HOM05D004434 ORTHO05D000365 2.6e-10 68.6 76 55.3
AL6G53460 Arabidopsis lyrata HOM05D004434 ORTHO05D000365 3.3e-10 68.2 59 61.0
Aa31LG5G120 Aethionema arabicum HOM05D004434 ORTHO05D000365 4.4e-10 67.8 67 50.7
arahy.Tifrunner.gnm1.ann1.F2RES5 Arachis hypogaea HOM05D004434 ORTHO05D000365 4.4e-10 67.8 60 63.3
arahy.Tifrunner.gnm1.ann1.XPK4NL Arachis hypogaea HOM05D004434 ORTHO05D000365 4.4e-10 67.8 60 63.3
FAN03G0453 Fragaria x ananassa HOM05D004434 ORTHO05D000365 5.7e-10 67.4 64 57.8
FAN06G1690 Fragaria x ananassa HOM05D004434 ORTHO05D000365 5.7e-10 67.4 64 57.8
Gorai.008G106900 Gossypium raimondii HOM05D004434 ORTHO05D000365 5.7e-10 67.4 75 50.7
CsaV3_6G009090 Cucumis sativus L. HOM05D004434 ORTHO05D000365 7.5e-10 67.0 69 55.1
BraA03t11925Z Brassica rapa HOM05D004434 ORTHO05D000365 9.7e-10 66.6 69 53.6
TAR629G0313 Trochodendron aralioides HOM05D004434 ORTHO05D000365 9.7e-10 66.6 74 55.4
Gohir.D12G098100 Gossypium hirsutum HOM05D004434 ORTHO05D000365 1.3e-09 66.2 75 50.7
BcaB01g02182 Brassica carinata HOM05D004434 ORTHO05D000365 1.7e-09 65.9 65 53.8
A03p32250 Brassica napus HOM05D004434 ORTHO05D000365 1.7e-09 65.9 65 53.8
ClCG06G002970 Citrullus lanatus HOM05D004434 ORTHO05D000365 1.7e-09 65.9 89 46.1
MELO3C022233.2 Cucumis melo HOM05D004434 ORTHO05D000365 1.7e-09 65.9 72 51.4
Thhalv10028687m.g Eutrema salsugineum HOM05D004434 ORTHO05D000365 1.7e-09 65.9 65 53.8
BraA03t12395Z Brassica rapa HOM05D004434 ORTHO05D000365 2.2e-09 65.5 65 53.8
Nn6g33946 Nelumbo nucifera HOM05D004434 ORTHO05D000365 2.8e-09 65.1 86 47.7
CARHR248090 Cardamine hirsuta HOM05D004434 ORTHO05D000365 3.7e-09 64.7 59 59.3
THA.LOC104801484 Tarenaya hassleriana HOM05D004434 ORTHO05D000365 3.7e-09 64.7 63 52.4
Sed0003684 Sechium edule HOM05D004434 ORTHO05D000365 4.8e-09 64.3 82 46.3
ECA240G3600 Erigeron canadensis HOM05D004434 ORTHO05D000365 6.3e-09 63.9 59 61.0
Lj1g0013991 Lotus japonicus HOM05D004434 ORTHO05D000365 6.3e-09 63.9 59 55.9
Aqoxy5G03868 Aquilegia oxysepala HOM05D004434 ORTHO05D000365 8.2e-09 63.5 60 61.7
BcaC01g04892 Brassica carinata HOM05D004434 ORTHO05D000365 8.2e-09 63.5 65 52.3
C03p32580 Brassica napus HOM05D004434 ORTHO05D000365 8.2e-09 63.5 65 52.3
BolC3t15597H Brassica oleracea HOM05D004434 ORTHO05D000365 8.2e-09 63.5 65 52.3
Nn1g00983 Nelumbo nucifera HOM05D004434 ORTHO05D000365 8.2e-09 63.5 76 51.3
A03p27120 Brassica napus HOM05D004434 ORTHO05D000365 1.1e-08 63.2 65 52.3
Lsat_1_v5_gn_7_10141 Lactuca sativa HOM05D004434 ORTHO05D000365 1.4e-08 62.8 63 60.3
PGR004G2137 Punica granatum HOM05D004434 ORTHO05D000365 1.4e-08 62.8 68 52.9
CiPaw.14G024800 Carya illinoinensis HOM05D004434 ORTHO05D000365 3.1e-08 61.6 65 52.3
HanXRQChr03g0093291 Helianthus annuus HOM05D004434 ORTHO05D000365 3.1e-08 61.6 62 58.1
Actinidia33486 Actinidia chinensis HOM05D004434 ORTHO05D000365 4.1e-08 61.2 72 48.6
Atru.chr5.222 Acer truncatum HOM05D004434 ORTHO05D000365 5.3e-08 60.8 76 53.9
DCAR_025094 Daucus carota HOM05D004434 ORTHO05D000365 5.3e-08 60.8 58 56.9
BcaB01g02208 Brassica carinata HOM05D004434 ORTHO05D000365 7.0e-08 60.5 65 49.2
BcaC01g06888 Brassica carinata HOM05D004434 ORTHO05D000365 1.6e-07 59.3 65 49.2
BolC3t16201H Brassica oleracea HOM05D004434 ORTHO05D000365 1.6e-07 59.3 65 49.2
Haze_07673 Corylus avellana HOM05D000627 ORTHO05D000365 1.6e-07 59.3 66 53.0
DCAR_015869 Daucus carota HOM05D004434 ORTHO05D000365 1.6e-07 59.3 73 49.3
Sc02g0002850 Simmondsia chinensis HOM05D004434 ORTHO05D000365 2.0e-07 58.9 59 52.5
C03p39300 Brassica napus HOM05D004434 ORTHO05D000365 2.7e-07 58.5 65 49.2
Nn4g23345 Nelumbo nucifera HOM05D000627 ORTHO05D000365 3.5e-07 58.2 68 51.5
Hund27382 Selenicereus undatus HOM05D004434 ORTHO05D000365 4.5e-07 57.8 76 44.7
SGA_v2.0_scaffold11G05524 Striga asiatica HOM05D004434 ORTHO05D000365 4.5e-07 57.8 62 51.6
GSVIVG01007914001 Vitis vinifera HOM05D000627 ORTHO05D000365 4.5e-07 57.8 67 50.7
HanXRQChr04g0123341 Helianthus annuus HOM05D004434 ORTHO05D000365 5.9e-07 57.4 59 54.2
HanXRQChr13g0422911 Helianthus annuus HOM05D004434 ORTHO05D000365 5.9e-07 57.4 70 47.1
Cc00_g02210 Coffea canephora HOM05D000627 ORTHO05D000365 7.7e-07 57.0 66 48.5
Peaxi162Scf00375g00812 Petunia axillaris HOM05D004434 ORTHO05D000365 1.0e-06 56.6 85 43.5
Actinidia19012 Actinidia chinensis HOM05D004434 ORTHO05D000365 1.3e-06 56.2 81 43.2
Peaxi162Scf00350g00610 Petunia axillaris HOM05D004434 ORTHO05D000365 1.3e-06 56.2 67 58.2
BcaC04g24205 Brassica carinata HOM05D004434 ORTHO05D000365 1.7e-06 55.8 65 46.2
BolC9t52944H Brassica oleracea HOM05D004434 ORTHO05D000365 1.7e-06 55.8 65 46.2
C09p00090 Brassica napus HOM05D004434 ORTHO05D000365 5.0e-06 54.3 65 44.6
BraA09t35683Z Brassica rapa HOM05D004434 ORTHO05D000365 5.0e-06 54.3 65 44.6
Lalb_Chr01g0021481 Lupinus albus HOM05D004434 ORTHO05D000365 6.5e-06 53.9 29 75.9


User provided reference genes

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