Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 3.2e-178 628.2 305 100.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.0e-176 623.2 305 99.0
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 5.1e-176 620.9 305 98.7
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 7.7e-156 553.9 300 86.7
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.1e-154 550.1 310 87.7
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 2.0e-151 539.3 301 83.7
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 5.7e-151 537.7 301 84.4
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 9.7e-151 537.0 302 83.1
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 1.3e-150 536.6 273 94.5
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.7e-150 536.2 302 83.8
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 2.8e-150 535.4 298 85.2
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 2.8e-150 535.4 300 83.7
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 6.3e-150 534.3 298 83.9
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 3.1e-149 531.9 302 83.4
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 4.1e-149 531.6 303 81.8
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 6.9e-149 530.8 297 84.5
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 1.2e-148 530.0 301 82.1
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 2.0e-148 529.3 298 82.9
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 4.5e-148 528.1 303 83.2
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 4.5e-148 528.1 302 82.1
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 7.7e-148 527.3 302 82.8
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 7.7e-148 527.3 298 81.5
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 1.7e-147 526.2 297 83.8
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 2.2e-147 525.8 301 82.4
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 2.9e-147 525.4 300 81.7
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 3.8e-147 525.0 302 81.5
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 3.8e-147 525.0 298 82.2
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 6.5e-147 524.2 303 79.2
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 6.5e-147 524.2 304 80.9
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 8.5e-147 523.9 305 82.0
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 1.1e-146 523.5 304 81.2
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 1.9e-146 522.7 298 81.2
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 2.5e-146 522.3 304 81.6
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 4.2e-146 521.5 298 81.2
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 4.2e-146 521.5 301 80.7
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 5.5e-146 521.2 302 80.5
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 7.2e-146 520.8 303 81.8
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 9.4e-146 520.4 301 82.1
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.6e-145 519.6 297 81.1
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 2.1e-145 519.2 298 81.2
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 3.6e-145 518.5 303 81.5
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.6e-145 518.5 302 80.8
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 3.6e-145 518.5 302 80.8
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.0e-144 516.9 305 80.0
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.4e-144 516.5 302 79.1
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 1.4e-144 516.5 298 81.2
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 1.4e-144 516.5 298 80.5
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 1.8e-144 516.2 298 81.2
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.8e-144 516.2 298 81.9
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.0e-144 515.4 302 79.8
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 3.0e-144 515.4 300 80.0
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 3.0e-144 515.4 304 79.6
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 3.0e-144 515.4 298 80.5
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.9e-144 515.0 298 79.9
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 5.2e-144 514.6 302 83.1
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 5.2e-144 514.6 298 79.9
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 6.7e-144 514.2 302 81.8
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 8.8e-144 513.8 302 80.5
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 1.5e-143 513.1 298 80.2
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 1.5e-143 513.1 298 79.2
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 4.4e-143 511.5 302 78.8
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 4.4e-143 511.5 303 79.9
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 5.7e-143 511.1 302 79.8
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 5.7e-143 511.1 298 79.9
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 7.4e-143 510.8 302 79.5
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 9.7e-143 510.4 306 79.1
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 2.2e-142 509.2 297 80.8
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 2.8e-142 508.8 306 79.1
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 2.8e-142 508.8 306 79.1
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 2.8e-142 508.8 299 79.9
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 3.7e-142 508.4 306 78.8
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 6.3e-142 507.7 302 78.8
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 1.4e-141 506.5 302 79.5
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.8e-141 506.1 300 79.0
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 1.8e-141 506.1 305 82.0
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 2.2e-139 499.2 307 78.5
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.5e-138 496.5 297 78.8
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 5.5e-138 494.6 300 79.7
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 3.0e-136 488.8 282 80.9
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 8.8e-136 487.3 300 76.7
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 4.4e-135 485.0 359 67.1
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 2.2e-134 482.6 300 76.0
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 9.1e-133 477.2 277 85.6
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.1e-130 470.3 268 82.8
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.5e-130 469.9 306 79.7
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 4.2e-130 468.4 302 69.9
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.0e-128 463.8 303 72.6
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 1.8e-128 463.0 281 76.2
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 5.2e-128 461.5 247 85.8
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 5.7e-127 458.0 297 70.4
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 5.4e-125 451.4 292 73.3
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 7.0e-125 451.1 254 83.9
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.8e-123 445.3 253 81.0
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.6e-121 439.9 253 80.6
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 2.7e-121 439.1 302 71.9
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.6e-121 438.7 254 79.5
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 8.0e-121 437.6 299 66.2
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 8.8e-120 434.1 253 80.2
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 2.6e-119 432.6 269 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.8e-117 426.4 292 68.2
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.2e-113 413.7 282 67.4
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 3.0e-112 409.1 258 76.4
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.4e-109 399.4 232 82.8
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 9.5e-106 387.5 218 82.1
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 7.8e-100 367.9 299 59.2
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.6e-97 360.1 210 79.5
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 4.7e-97 358.6 300 58.3
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 7.3e-90 334.7 293 55.6
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 1.6e-81 307.0 314 49.4
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.7e-81 305.4 209 67.0
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 7.1e-77 291.6 182 74.2
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 2.1e-76 290.0 288 48.3
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.3e-73 280.8 286 52.4
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 1.2e-71 274.2 154 82.5
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-68 263.8 165 73.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 5.6e-66 255.4 145 82.1
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 1.4e-64 250.8 156 78.2
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.5e-60 236.1 187 62.6
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.5e-55 220.7 182 61.5
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.0e-55 220.3 117 87.2
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.6e-52 210.7 124 77.4
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 3.5e-52 209.5 135 73.3
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.1e-50 204.5 114 81.6
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 3.4e-47 193.0 108 84.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.8e-43 180.6 124 71.0
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 4.5e-39 166.0 94 85.1
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 1.3e-38 164.5 118 66.1
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 4.2e-37 159.5 172 51.2
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 4.6e-36 156.0 107 68.2
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 4.5e-31 139.4 295 35.6
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 6.5e-30 135.6 321 33.6
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 2.1e-28 130.6 95 70.5
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-24 118.2 93 62.4
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 4.4e-18 96.3 69 65.2
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 1.3e-17 94.7 69 65.2
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.1e-16 91.7 167 36.5
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 4.1e-16 89.7 61 73.8
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 2.7e-15 87.0 55 76.4
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.5e-15 86.7 106 48.1
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.9e-13 80.9 165 29.7
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 2.1e-12 77.4 42 78.6
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 2.1e-12 77.4 42 78.6
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 4.7e-12 76.3 49 69.4
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.7e-12 76.3 285 27.0
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 4.7e-12 76.3 55 63.6
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.0e-11 75.1 277 26.7
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 1.8e-11 74.3 40 80.0
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 8.8e-11 72.0 81 51.9
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.5e-10 71.2 266 28.6
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 2.6e-10 70.5 281 27.4
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.4e-10 70.1 297 25.3
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 7.5e-10 68.9 285 27.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 7.5e-10 68.9 296 26.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.3e-09 68.2 296 27.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 6.3e-09 65.9 280 26.1
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.3e-09 65.5 277 24.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 3.1e-08 63.5 202 27.2
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 5.4e-08 62.8 304 24.0
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 5.4e-08 62.8 303 25.1
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 7.0e-08 62.4 276 27.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.0e-08 62.4 277 24.9
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 7.0e-08 62.4 303 26.1
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.1e-08 62.0 276 24.3
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.2e-07 61.6 245 27.8
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.2e-07 61.6 303 23.1
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.2e-07 61.6 199 28.1
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-07 61.6 276 23.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-07 61.6 276 23.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.6e-07 61.2 276 24.3
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.6e-07 61.2 125 36.0
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.0e-07 60.8 300 23.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 2.0e-07 60.8 289 25.6
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-07 60.5 272 23.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-07 60.5 272 23.9
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.5e-07 60.1 176 32.4
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.5e-07 60.1 199 28.1
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 3.5e-07 60.1 301 25.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 7.7e-07 58.9 290 26.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.0e-06 58.5 278 26.6
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-06 57.8 206 28.2
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 5.0e-06 56.2 51 43.1
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.0e-06 56.2 124 33.9
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 6.5e-06 55.8 234 24.8


User provided reference genes

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