Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401020106 Solanum tuberosum HOM05D007486 ORTHO05D003673 4.3e-83 311.2 152 100.0
Solyc06g083200.3 Solanum lycopersicum HOM05D007486 ORTHO05D003673 8.7e-68 260.4 133 94.7
Sopen06g034590 Solanum pennellii HOM05D007486 ORTHO05D003673 1.1e-67 260.0 133 94.7
Nitab4.5_0019111g0010 Nicotiana tabacum HOM05D007486 ORTHO05D003673 1.9e-54 216.1 134 81.3
Nitab4.5_0003020g0090 Nicotiana tabacum HOM05D007486 ORTHO05D003673 1.4e-52 209.9 135 79.3
CAN.G874.18 Capsicum annuum HOM05D007486 ORTHO05D003673 3.9e-44 181.8 137 71.5
Cc01_g16440 Coffea canephora HOM05D007486 ORTHO05D003673 3.2e-38 162.2 137 64.2
Lj2P1121T80 Lonicera japonica HOM05D007486 ORTHO05D003673 8.0e-37 157.5 124 62.9
CsaV3_3G030190 Cucumis sativus L. HOM05D007486 ORTHO05D003673 3.7e-34 148.7 102 66.7
Oeu003624.1 Olea europaea HOM05D007486 ORTHO05D003673 1.8e-33 146.4 123 60.2
TWI18G0642 Tripterygium wilfordii HOM05D007486 ORTHO05D003673 4.1e-33 145.2 121 60.3
MELO3C022733.2 Cucumis melo HOM05D007486 ORTHO05D003673 7.0e-33 144.4 141 53.9
Manes.13G051900 Manihot esculenta HOM05D007486 ORTHO05D003673 7.0e-33 144.4 119 62.2
TAR625G0208 Trochodendron aralioides HOM05D007486 ORTHO05D003673 9.1e-33 144.1 123 60.2
ClCG09G011490 Citrullus lanatus HOM05D007486 ORTHO05D003673 1.2e-32 143.7 103 67.0
Lj3A22G11 Lonicera japonica HOM05D007486 ORTHO05D003673 1.2e-32 143.7 121 60.3
GSVIVG01009330001 Vitis vinifera HOM05D007486 ORTHO05D003673 1.6e-32 143.3 106 67.0
MSTRG.12763 Avicennia marina HOM05D007486 ORTHO05D003673 5.9e-32 141.4 143 53.8
Sed0025116 Sechium edule HOM05D007486 ORTHO05D003673 3.8e-31 138.7 114 59.6
SalBow3G3646 Salvia bowleyana HOM05D007486 ORTHO05D003673 6.5e-31 137.9 117 56.4
Potri.002G248100 Populus trichocarpa HOM05D007486 ORTHO05D003673 8.5e-31 137.5 134 52.2
Actinidia23773 Actinidia chinensis HOM05D007486 ORTHO05D003673 1.9e-30 136.3 121 59.5
CSS0040920 Camellia sinensis var. sinensis HOM05D007486 ORTHO05D003673 2.5e-30 136.0 88 67.0
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 2.5e-30 136.0 130 55.4
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 2.5e-30 136.0 119 60.5
DCAR_008418 Daucus carota HOM05D007486 ORTHO05D003673 4.2e-30 135.2 124 58.1
FAN25G2586 Fragaria x ananassa HOM05D007486 ORTHO05D003673 4.2e-30 135.2 88 70.5
RcHm_v2.0_Chr5g0046411 Rosa chinensis HOM05D007486 ORTHO05D003673 4.2e-30 135.2 126 57.1
MD10G1156500 Malus domestica HOM05D007486 ORTHO05D003673 7.2e-30 134.4 90 68.9
Haze_19599 Corylus avellana HOM05D007486 ORTHO05D003673 1.6e-29 133.3 100 63.0
FvH4_3g25580 Fragaria vesca HOM05D007486 ORTHO05D003673 2.1e-29 132.9 81 74.1
FAN11G1759 Fragaria x ananassa HOM05D007486 ORTHO05D003673 2.1e-29 132.9 81 74.1
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 2.1e-29 132.9 92 63.0
FAN16G2484 Fragaria x ananassa HOM05D007486 ORTHO05D003673 2.7e-29 132.5 121 57.9
FAN21G3323 Fragaria x ananassa HOM05D007486 ORTHO05D003673 2.7e-29 132.5 121 57.9
Lalb_Chr20g0117691 Lupinus albus HOM05D007486 ORTHO05D003673 2.7e-29 132.5 86 67.4
Aqoxy7G03388 Aquilegia oxysepala HOM05D007486 ORTHO05D003673 3.6e-29 132.1 112 59.8
Prupe.8G194300 Prunus persica HOM05D007486 ORTHO05D003673 4.7e-29 131.7 136 53.7
Sp3g22830 Schrenkiella parvula HOM05D007486 ORTHO05D003673 4.7e-29 131.7 133 54.1
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 1.4e-28 130.2 130 53.1
CDE08G0247 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 2.3e-28 129.4 89 64.0
Psat1g191400 Pisum sativum HOM05D007486 ORTHO05D003673 2.3e-28 129.4 103 60.2
Cfa016598 Carpinus fangiana HOM05D007486 ORTHO05D003673 3.0e-28 129.0 117 58.1
THA.LOC104804636 Tarenaya hassleriana HOM05D007486 ORTHO05D003673 3.0e-28 129.0 83 71.1
CDE08G0620 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 4.0e-28 128.6 84 66.7
Gohir.D07G096200 Gossypium hirsutum HOM05D007486 ORTHO05D003673 4.0e-28 128.6 99 63.6
Duzib133G0357 Durio zibethinus HOM05D007486 ORTHO05D003673 5.2e-28 128.3 86 69.8
Gohir.A07G091500 Gossypium hirsutum HOM05D007486 ORTHO05D003673 8.8e-28 127.5 83 69.9
AL3G41110 Arabidopsis lyrata HOM05D007486 ORTHO05D003673 1.2e-27 127.1 84 69.0
AT3G25210 Arabidopsis thaliana HOM05D007486 ORTHO05D003673 1.2e-27 127.1 135 53.3
Aa31sc18G110 Aethionema arabicum HOM05D007486 ORTHO05D003673 1.5e-27 126.7 125 56.0
COL.COLO4_19319 Corchorus olitorius HOM05D007486 ORTHO05D003673 1.5e-27 126.7 86 67.4
Sc17g0001920 Simmondsia chinensis HOM05D007486 ORTHO05D003673 2.6e-27 125.9 105 60.0
Thhalv10002564m.g Eutrema salsugineum HOM05D007486 ORTHO05D003673 3.4e-27 125.6 127 55.1
CiPaw.13G051500 Carya illinoinensis HOM05D007486 ORTHO05D003673 4.4e-27 125.2 78 71.8
Gorai.001G103500 Gossypium raimondii HOM05D007486 ORTHO05D003673 4.4e-27 125.2 124 52.4
Thecc.01G215400 Theobroma cacao HOM05D007486 ORTHO05D003673 4.4e-27 125.2 86 67.4
Lj6g0012572 Lotus japonicus HOM05D007486 ORTHO05D003673 9.8e-27 124.0 100 57.0
Migut.N00643 Erythranthe guttata HOM05D007486 ORTHO05D003673 1.3e-26 123.6 79 70.9
HanXRQChr06g0172221 Helianthus annuus HOM05D007486 ORTHO05D003673 1.7e-26 123.2 142 47.9
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 2.2e-26 122.9 78 66.7
Eucgr.H00752 Eucalyptus grandis HOM05D007486 ORTHO05D003673 2.8e-26 122.5 81 67.9
PGR083G0899 Punica granatum HOM05D007486 ORTHO05D003673 2.8e-26 122.5 115 53.9
Rhsim01G0250000 Rhododendron simsii HOM05D007486 ORTHO05D003673 2.8e-26 122.5 113 54.0
BcaC06g35800 Brassica carinata HOM05D007486 ORTHO05D003673 3.7e-26 122.1 134 50.0
A07p07090 Brassica napus HOM05D007486 ORTHO05D003673 3.7e-26 122.1 132 53.0
BolC7t41537H Brassica oleracea HOM05D007486 ORTHO05D003673 3.7e-26 122.1 134 50.0
BraA07t28496Z Brassica rapa HOM05D007486 ORTHO05D003673 4.8e-26 121.7 134 50.0
Medtr2g018820 Medicago truncatula HOM05D007486 ORTHO05D003673 4.8e-26 121.7 82 67.1
BcaB06g26711 Brassica carinata HOM05D007486 ORTHO05D003673 6.3e-26 121.3 87 64.4
C07p10710 Brassica napus HOM05D007486 ORTHO05D003673 6.3e-26 121.3 134 50.0
Nn7g38080 Nelumbo nucifera HOM05D007486 ORTHO05D003673 1.1e-25 120.6 126 53.2
QL09p049342 Quercus lobata HOM05D007486 ORTHO05D003673 1.4e-25 120.2 84 64.3
Ciclev10031787m.g Citrus clementina HOM05D007486 ORTHO05D003673 2.4e-25 119.4 128 53.1
Glyma.15G091700 Glycine max HOM05D007486 ORTHO05D003673 4.1e-25 118.6 86 61.6
Carub.0003s2558 Capsella rubella HOM05D007486 ORTHO05D003673 5.4e-25 118.2 78 69.2
Glyma.13G220800 Glycine max HOM05D007486 ORTHO05D003673 5.4e-25 118.2 80 65.0
Atru.chr6.1455 Acer truncatum HOM05D007486 ORTHO05D003673 7.0e-25 117.9 77 67.5
VMungo0540G1511 Vigna mungo HOM05D007486 ORTHO05D003673 1.2e-24 117.1 80 66.2
SHI02273 Sapria himalayana HOM05D007486 ORTHO05D003673 1.6e-24 116.7 132 47.7
Phvul.006G167600 Phaseolus vulgaris HOM05D007486 ORTHO05D003673 2.7e-24 115.9 80 65.0
EL10Ac7g17952 Beta vulgaris HOM05D007486 ORTHO05D003673 3.5e-24 115.5 129 47.3
ATR0665G439 Amborella trichopoda HOM05D007486 ORTHO05D003673 4.5e-24 115.2 87 59.8
HPP92_000898 Vanilla planifolia HOM05D007486 ORTHO05D003673 2.9e-23 112.5 92 57.6
MBI15_g18240_MAGBIO Magnolia biondii HOM05D007486 ORTHO05D003673 1.4e-20 103.6 78 57.7
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 5.7e-19 98.2 111 46.8
Os06g0184866 Oryza sativa ssp. japonica HOM05D007486 ORTHO05D003673 8.0e-13 77.8 82 40.2
Zm00001eb374560 Zea mays HOM05D007486 ORTHO05D003673 1.0e-12 77.4 79 41.8
SEGI_29222 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 2.4e-09 66.2 65 47.7
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 1.0e-07 60.8 70 41.4
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 1.7e-07 60.1 70 42.9
Mapoly0015s0193 Marchantia polymorpha HOM05D004079 ORTHO05D023551 1.7e-07 60.1 75 37.3
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 3.0e-07 59.3 124 35.5
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.9e-07 58.9 65 36.9
Aa31LG9G8720 Aethionema arabicum HOM05D005973 ORTHO05D007285 5.0e-07 58.5 70 40.0
Lalb_Chr25g0282721 Lupinus albus HOM05D005973 ORTHO05D007285 6.6e-07 58.2 66 40.9
SGA_v2.0_scaffold97G29181 Striga asiatica HOM05D007402 ORTHO05D003673 6.6e-07 58.2 75 32.0
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 8.6e-07 57.8 92 30.4
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.1e-06 57.4 65 41.5
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.5e-06 57.0 65 35.4
Migut.D02192 Erythranthe guttata HOM05D007402 ORTHO05D003673 1.5e-06 57.0 75 29.3
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.5e-06 56.2 112 30.4
Hma1.2p1_0071F.1_g038080 Hydrangea macrophylla HOM05D007402 ORTHO05D003673 2.5e-06 56.2 75 30.7
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 3.3e-06 55.8 120 31.7
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 4.3e-06 55.5 69 39.1
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 4.3e-06 55.5 83 34.9
arahy.Tifrunner.gnm1.ann1.9Z0TAG Arachis hypogaea HOM05D005973 ORTHO05D007285 5.6e-06 55.1 69 39.1
arahy.Tifrunner.gnm1.ann1.P50PF0 Arachis hypogaea HOM05D005973 ORTHO05D007285 5.6e-06 55.1 69 39.1
CDE02G0959 Ceratophyllum demersum HOM05D007402 ORTHO05D003673 7.3e-06 54.7 73 34.2
PGR004G2397 Punica granatum HOM05D007402 ORTHO05D003673 7.3e-06 54.7 73 32.9
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 9.5e-06 54.3 69 37.7
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 9.5e-06 54.3 86 34.9


User provided reference genes

Program Settings