Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 9.6e-200 699.9 340 100.0
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 2.1e-186 655.6 340 95.0
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 1.1e-182 643.3 341 93.3
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.3e-151 540.0 353 76.8
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 9.1e-150 533.9 347 77.5
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 1.1e-139 500.4 364 70.3
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 9.2e-126 454.1 281 76.2
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 2.8e-122 442.6 258 77.9
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 1.4e-121 440.3 345 62.3
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 6.8e-121 438.0 338 68.6
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 2.6e-120 436.0 263 75.3
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 7.6e-120 434.5 318 66.0
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 1.3e-119 433.7 260 75.8
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 1.7e-119 433.3 253 77.5
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 2.2e-119 433.0 256 77.3
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 5.4e-118 428.3 261 73.6
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.6e-117 426.8 262 75.6
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 2.1e-117 426.4 258 77.1
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 2.7e-117 426.0 264 75.4
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 1.3e-116 423.7 289 71.6
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 3.9e-116 422.2 262 74.4
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 5.1e-116 421.8 256 73.8
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 6.6e-116 421.4 261 73.6
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 8.6e-116 421.0 260 76.2
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 3.3e-115 419.1 261 72.4
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 1.6e-114 416.8 257 74.7
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.6e-114 416.8 258 73.6
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.1e-114 416.4 258 73.3
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.1e-114 416.4 258 73.3
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 3.6e-114 415.6 255 74.9
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 6.2e-114 414.8 256 75.4
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 3.1e-113 412.5 260 72.3
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 3.1e-113 412.5 254 73.6
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 4.0e-113 412.1 275 68.7
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.2e-113 411.8 260 71.9
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 1.2e-112 410.6 256 73.0
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 2.0e-112 409.8 257 73.2
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 2.6e-112 409.5 255 73.3
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 3.4e-112 409.1 337 59.1
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 3.4e-112 409.1 281 68.7
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 7.6e-112 407.9 279 67.7
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 1.7e-111 406.8 278 67.6
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 1.7e-111 406.8 254 72.8
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.9e-111 406.0 254 73.6
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 6.4e-111 404.8 259 70.3
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 6.4e-111 404.8 253 74.3
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 8.4e-111 404.4 255 71.4
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 8.4e-111 404.4 255 71.4
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 8.4e-111 404.4 255 71.4
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 8.4e-111 404.4 256 70.7
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 1.4e-110 403.7 257 68.9
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.9e-110 403.3 254 74.4
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 2.4e-110 402.9 258 71.3
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 2.4e-110 402.9 258 70.9
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 2.4e-110 402.9 330 59.4
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 5.4e-110 401.7 258 70.9
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 7.1e-110 401.4 256 71.5
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 9.3e-110 401.0 249 73.1
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 9.3e-110 401.0 256 70.7
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 1.2e-109 400.6 254 71.7
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 1.2e-109 400.6 258 72.9
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 2.7e-109 399.4 263 69.2
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 3.5e-109 399.1 260 70.4
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 7.8e-109 397.9 257 68.5
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 7.8e-109 397.9 256 73.0
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 1.0e-108 397.5 257 73.2
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 1.0e-108 397.5 323 58.8
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.3e-108 397.1 282 67.0
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 1.3e-108 397.1 256 69.1
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 1.9e-107 393.3 263 66.2
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 3.6e-106 389.0 313 60.1
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 4.0e-105 385.6 248 69.8
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 2.0e-104 383.3 297 60.9
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 9.9e-104 380.9 223 78.0
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 9.9e-104 380.9 267 67.0
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 1.3e-103 380.6 229 78.2
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 2.2e-103 379.8 225 76.0
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 2.2e-103 379.8 248 68.1
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 2.9e-103 379.4 228 76.3
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 1.2e-101 374.0 252 65.9
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 2.8e-98 362.8 233 70.0
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 6.7e-92 341.7 266 63.5
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 6.2e-90 335.1 277 58.1
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 3.3e-83 312.8 255 60.0
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.6e-82 310.5 244 59.0
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 1.8e-81 307.0 216 65.7
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.2e-80 304.3 228 62.7
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 2.2e-79 300.1 198 66.7
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.2e-79 300.1 182 74.2
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 1.1e-78 297.7 278 51.8
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 3.2e-78 296.2 182 74.2
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 4.2e-78 295.8 192 70.8
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.3e-76 290.8 233 59.2
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.3e-76 290.8 233 59.2
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 1.5e-75 287.3 182 73.6
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 4.1e-73 279.3 253 56.5
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 5.5e-70 268.9 164 72.6
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.6e-69 266.2 177 68.9
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 5.1e-68 262.3 238 51.3
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 4.1e-65 252.7 168 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 3.8e-63 246.1 233 52.4
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 7.0e-57 225.3 256 45.3
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 7.0e-57 225.3 256 45.3
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 7.0e-57 225.3 194 57.2
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 2.5e-54 216.9 184 58.2
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 5.7e-51 205.7 119 78.2
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 3.2e-46 189.9 133 63.2
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.0e-44 184.9 133 61.7
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 5.5e-38 162.5 133 57.1
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 8.0e-37 158.7 238 37.4
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 2.4e-33 147.1 101 67.3
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 2.0e-27 127.5 85 68.2
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 3.4e-27 126.7 92 63.0
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 1.2e-24 118.2 256 32.8
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 1.6e-24 117.9 251 34.7
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 7.5e-19 99.0 63 69.8
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 3.7e-18 96.7 262 28.6
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 9.5e-06 55.5 32 71.9


User provided reference genes

Program Settings