Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.2e-48 196.1 88 100.0
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 5.8e-40 167.2 76 97.4
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.7e-39 165.6 76 96.1
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.7e-39 165.6 76 96.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.9e-39 164.9 76 96.1
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.8e-39 164.5 76 96.1
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 6.4e-39 163.7 76 94.7
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 8.4e-39 163.3 73 97.3
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.9e-38 162.2 73 95.9
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.2e-38 161.0 76 93.4
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 7.1e-38 160.2 76 92.1
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.3e-38 159.8 76 90.8
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.3e-38 159.8 76 90.8
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 9.3e-38 159.8 76 92.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 9.3e-38 159.8 76 90.8
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 9.3e-38 159.8 76 93.4
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.6e-37 159.1 76 89.5
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.6e-37 159.1 76 92.1
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.6e-37 159.1 76 92.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.6e-37 159.1 76 92.1
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 2.1e-37 158.7 76 92.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.7e-37 158.3 76 92.1
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.7e-37 158.3 76 89.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 2.7e-37 158.3 76 90.8
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.5e-37 157.9 76 92.1
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 90.8
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 92.1
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 92.1
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 92.1
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 92.1
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 92.1
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 4.6e-37 157.5 76 92.1
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.0e-37 157.1 76 90.8
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 6.0e-37 157.1 75 92.0
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 7.9e-37 156.8 74 93.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 88.2
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 90.8
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 90.8
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 90.8
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 90.8
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 89.5
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 7.9e-37 156.8 76 89.5
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.0e-36 156.4 76 90.8
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.0e-36 156.4 76 90.8
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.0e-36 156.4 76 90.8
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.3e-36 156.0 76 89.5
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 1.3e-36 156.0 76 90.8
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.3e-36 156.0 76 89.5
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.3e-36 156.0 76 89.5
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.3e-36 156.0 76 90.8
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.8e-36 155.6 76 90.8
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.8e-36 155.6 76 90.8
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.8e-36 155.6 76 90.8
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 88.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 88.2
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 88.2
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 88.2
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.3e-36 155.2 76 89.5
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 2.3e-36 155.2 73 93.2
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 3.0e-36 154.8 76 89.5
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 3.0e-36 154.8 76 89.5
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 3.0e-36 154.8 76 90.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 88.2
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 88.2
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 88.2
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 3.9e-36 154.5 76 89.5
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 5.1e-36 154.1 76 90.8
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 5.1e-36 154.1 76 89.5
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 5.1e-36 154.1 76 88.2
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 5.1e-36 154.1 74 90.5
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 89.5
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 89.5
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 89.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 89.5
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 88.2
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 89.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 6.7e-36 153.7 73 93.2
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.7e-36 153.7 76 88.2
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 8.7e-36 153.3 76 88.2
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.1e-35 152.9 76 88.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.1e-35 152.9 76 86.8
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.5e-35 152.5 76 86.8
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.9e-35 152.1 76 86.8
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.9e-35 152.1 76 86.8
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.9e-35 152.1 76 88.2
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.9e-35 152.1 76 84.2
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.5e-35 151.8 73 90.4
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.5e-35 151.8 76 88.2
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.5e-35 151.8 76 88.2
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 3.3e-35 151.4 76 85.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-35 151.4 76 88.2
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.3e-35 151.0 76 86.8
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 5.6e-35 150.6 76 86.8
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 5.6e-35 150.6 76 86.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 5.6e-35 150.6 76 86.8
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 5.6e-35 150.6 76 85.5
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 7.4e-35 150.2 76 85.5
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.3e-34 149.4 73 90.4
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.6e-34 149.1 81 80.2
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.7e-34 147.9 76 84.2
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.1e-33 146.4 76 85.5
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.8e-33 145.6 76 78.9
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 5.3e-33 144.1 76 78.9
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 6.9e-33 143.7 76 82.9
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 9.0e-33 143.3 76 82.9
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 9.0e-33 143.3 76 81.6
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.6e-32 141.7 76 80.3
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.6e-32 141.7 76 80.3
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.5e-32 141.0 76 77.6
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.9e-31 138.3 76 75.0
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.2e-30 134.8 74 78.4
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.6e-29 132.5 76 73.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.3e-28 129.4 76 71.1
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.9e-28 127.9 66 80.3
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.9e-28 127.9 66 80.3
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 4.0e-25 117.9 76 68.4
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.2e-22 108.2 73 65.8
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.1e-17 93.2 76 59.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-17 93.2 66 62.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-17 93.2 66 62.1
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.8e-17 92.4 41 95.1
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.4e-12 76.3 42 78.6
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 7.2e-06 53.9 33 75.8


User provided reference genes

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