Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 6.8e-56 220.3 104 100.0
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.6e-28 129.4 93 72.0
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.6e-28 129.4 93 72.0
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.3e-26 121.3 93 67.7
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.2e-25 117.1 93 63.4
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.2e-25 117.1 93 63.4
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 2.2e-22 109.0 93 57.0
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.1e-21 106.7 93 53.8
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 7.2e-21 104.0 93 51.6
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 1.2e-20 103.2 93 57.0
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.6e-20 102.8 93 53.8
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.1e-20 102.4 95 54.7
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.7e-20 102.1 93 55.9
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 3.5e-20 101.7 93 55.9
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.3e-19 99.8 93 53.8
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.3e-19 99.8 93 51.6
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 2.3e-19 99.0 93 52.7
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 2.3e-19 99.0 93 51.6
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.9e-19 98.2 93 51.6
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.9e-19 98.2 93 50.5
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 3.9e-19 98.2 93 51.6
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 3.9e-19 98.2 93 51.6
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 5.1e-19 97.8 93 51.6
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 5.1e-19 97.8 93 51.6
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 6.7e-19 97.4 93 51.6
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 6.7e-19 97.4 93 49.5
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 6.7e-19 97.4 93 51.6
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 6.7e-19 97.4 93 50.5
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 8.7e-19 97.1 93 49.5
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.7e-19 97.1 96 52.1
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 8.7e-19 97.1 93 53.8
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.1e-18 96.7 93 50.5
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 1.1e-18 96.7 93 52.7
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 1.1e-18 96.7 93 51.6
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.5e-18 96.3 93 51.6
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.5e-18 96.3 93 52.7
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.9e-18 95.9 93 47.3
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 1.9e-18 95.9 95 48.4
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 2.5e-18 95.5 106 48.1
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.5e-18 95.5 93 48.4
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 3.3e-18 95.1 93 50.5
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 3.3e-18 95.1 93 50.5
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 4.3e-18 94.7 93 50.5
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 4.3e-18 94.7 93 50.5
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 4.3e-18 94.7 93 49.5
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 5.7e-18 94.4 93 52.7
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 7.4e-18 94.0 93 47.3
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 7.4e-18 94.0 93 49.5
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 7.4e-18 94.0 93 46.2
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 9.7e-18 93.6 93 48.4
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 9.7e-18 93.6 93 46.2
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.6e-17 92.8 93 50.5
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.6e-17 92.8 93 50.5
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.6e-17 92.8 93 48.4
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.2e-17 92.4 93 48.4
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 2.2e-17 92.4 93 47.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.2e-17 92.4 93 47.3
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.8e-17 92.0 93 46.2
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 2.8e-17 92.0 93 49.5
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 3.7e-17 91.7 93 48.4
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 3.7e-17 91.7 93 45.2
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 4.8e-17 91.3 93 45.2
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 6.3e-17 90.9 93 47.3
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 6.3e-17 90.9 93 48.4
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.3e-17 90.9 93 45.2
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.3e-17 90.9 93 46.2
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 6.3e-17 90.9 93 47.3
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 6.3e-17 90.9 93 47.3
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 8.2e-17 90.5 92 46.7
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 8.2e-17 90.5 93 47.3
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 8.2e-17 90.5 93 47.3
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 8.2e-17 90.5 91 48.4
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 8.2e-17 90.5 93 46.2
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.2e-17 90.5 93 45.2
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 8.2e-17 90.5 93 47.3
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 8.2e-17 90.5 92 46.7
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.1e-16 90.1 92 46.7
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.4e-16 89.7 92 46.7
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.4e-16 89.7 93 45.2
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.1e-16 88.6 92 45.7
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 3.1e-16 88.6 93 46.2
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 4.1e-16 88.2 92 44.6
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 4.1e-16 88.2 93 48.4
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 4.1e-16 88.2 99 45.5
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 4.1e-16 88.2 93 45.2
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 5.3e-16 87.8 93 46.2
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 6.9e-16 87.4 93 46.2
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 6.9e-16 87.4 92 44.6
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 9.0e-16 87.0 93 44.1
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 9.0e-16 87.0 92 45.7
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 44.6
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 44.6
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 44.6
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 44.6
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 44.6
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 44.6
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.2e-15 86.7 92 46.7
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 1.5e-15 86.3 92 45.7
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.5e-15 86.3 91 46.2
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 2.0e-15 85.9 92 44.6
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 2.0e-15 85.9 92 44.6
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 2.0e-15 85.9 92 44.6
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 2.0e-15 85.9 92 44.6
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 2.6e-15 85.5 92 43.5
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 2.6e-15 85.5 92 43.5
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 2.6e-15 85.5 92 43.5
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 2.6e-15 85.5 92 43.5
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 2.6e-15 85.5 93 45.2
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 3.4e-15 85.1 93 43.0
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 7.7e-15 84.0 92 43.5
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 7.7e-15 84.0 93 41.9
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.7e-14 82.8 85 45.9
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.9e-14 82.0 93 44.1
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.8e-14 81.6 92 44.6
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 5.0e-14 81.3 93 39.8
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.5e-14 80.5 88 48.9
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.5e-14 80.5 80 47.5
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.5e-14 80.5 88 48.9
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.5e-14 80.5 88 48.9
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.1e-13 80.1 80 46.2
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.1e-13 80.1 80 46.2
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.5e-13 79.0 82 47.6
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 2.5e-13 79.0 82 47.6
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 4.2e-13 78.2 85 42.4
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 9.4e-13 77.0 85 42.4
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 6.1e-12 74.3 37 91.9
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 2.8e-09 65.5 86 37.2
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 9.1e-08 60.5 76 36.8
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.5e-07 59.7 30 73.3
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.5e-07 59.7 30 73.3
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.4e-07 58.5 40 62.5
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 3.4e-07 58.5 91 31.9
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 5.9e-07 57.8 92 31.5
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 1.7e-06 56.2 37 64.9
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.7e-06 56.2 31 67.7
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.9e-06 55.5 37 67.6


User provided reference genes

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