Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401014244 Solanum tuberosum HOM05D003604 ORTHO05D004110 3.6e-38 161.0 77 100.0
Solyc03g118250.4 Solanum lycopersicum HOM05D003604 ORTHO05D004110 9.9e-36 152.9 77 94.8
Nitab4.5_0000335g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 1.4e-34 149.1 77 90.9
Nitab4.5_0000511g0020 Nicotiana tabacum HOM05D003604 ORTHO05D004110 1.4e-34 149.1 77 90.9
Sopen03g037160 Solanum pennellii HOM05D003604 ORTHO05D004110 1.4e-34 149.1 77 92.2
Solyc09g005300.3 Solanum lycopersicum HOM05D003604 ORTHO05D004110 9.3e-34 146.4 77 90.9
Sopen09g001270 Solanum pennellii HOM05D003604 ORTHO05D004110 9.3e-34 146.4 77 90.9
CAN.G843.15 Capsicum annuum HOM05D003604 ORTHO05D004110 3.5e-33 144.4 77 85.7
CAN.G5.14 Capsicum annuum HOM05D003604 ORTHO05D004110 6.0e-33 143.7 77 88.3
Peaxi162Scf00141g00107 Petunia axillaris HOM05D003604 ORTHO05D004110 1.3e-30 136.0 77 83.1
Manes.14G113200 Manihot esculenta HOM05D003604 ORTHO05D004110 2.0e-28 128.6 73 78.1
PGR031G2944 Punica granatum HOM05D003604 ORTHO05D004110 4.5e-28 127.5 74 75.7
RcHm_v2.0_Chr5g0036961 Rosa chinensis HOM05D003604 ORTHO05D004110 4.5e-28 127.5 72 77.8
FvH4_3g21511 Fragaria vesca HOM05D003604 ORTHO05D004110 5.8e-28 127.1 72 77.8
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 5.8e-28 127.1 72 77.8
Cpa.g.sc80.125 Carica papaya HOM05D003604 ORTHO05D004110 1.3e-27 125.9 73 75.3
Thecc.07G059200 Theobroma cacao HOM05D003604 ORTHO05D004110 1.3e-27 125.9 77 74.0
CSS0036620 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.7e-27 125.6 77 74.0
CSS0043024 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 1.7e-27 125.6 77 74.0
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.7e-27 125.6 72 77.8
Atru.chr2.3114 Acer truncatum HOM05D003604 ORTHO05D004110 2.9e-27 124.8 73 75.3
Atru.chr2.3131 Acer truncatum HOM05D003604 ORTHO05D004110 2.9e-27 124.8 73 75.3
Cc05_g12990 Coffea canephora HOM05D003604 ORTHO05D004110 2.9e-27 124.8 69 82.6
FAN16G3577 Fragaria x ananassa HOM05D003604 ORTHO05D004110 2.9e-27 124.8 72 77.8
Lsat_1_v5_gn_9_94841 Lactuca sativa HOM05D003604 ORTHO05D004110 2.9e-27 124.8 69 82.6
Eucgr.F03392 Eucalyptus grandis HOM05D003604 ORTHO05D004110 3.8e-27 124.4 73 78.1
Hma1.2p1_0456F.1_g156560 Hydrangea macrophylla HOM05D003604 ORTHO05D004110 3.8e-27 124.4 73 78.1
Haze_09573 Corylus avellana HOM05D003604 ORTHO05D004110 6.5e-27 123.6 73 75.3
Oeu005439.1 Olea europaea HOM05D003604 ORTHO05D004110 6.5e-27 123.6 77 75.3
SGA_v2.0_scaffold9G05001 Striga asiatica HOM05D003604 ORTHO05D004110 6.5e-27 123.6 73 78.1
Cfa020470 Carpinus fangiana HOM05D003604 ORTHO05D004110 8.4e-27 123.2 73 75.3
Duzib213G0846 Durio zibethinus HOM05D003604 ORTHO05D004110 8.4e-27 123.2 73 76.7
HanXRQChr13g0407501 Helianthus annuus HOM05D003604 ORTHO05D004110 8.4e-27 123.2 73 78.1
MD03G1215400 Malus domestica HOM05D003604 ORTHO05D004110 1.4e-26 122.5 69 78.3
CANSAT11G1782 Cannabis sativa HOM05D003604 ORTHO05D004110 1.9e-26 122.1 74 70.3
Duzib268G0095 Durio zibethinus HOM05D003604 ORTHO05D004110 1.9e-26 122.1 73 76.7
Gohir.A13G142800 Gossypium hirsutum HOM05D003604 ORTHO05D004110 1.9e-26 122.1 73 75.3
Gorai.013G165200 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.9e-26 122.1 73 75.3
Lj8C164T0 Lonicera japonica HOM05D003604 ORTHO05D004110 2.5e-26 121.7 77 70.1
TWI38G1923 Tripterygium wilfordii HOM05D003604 ORTHO05D004110 2.5e-26 121.7 77 71.4
RcHm_v2.0_Chr1g0332461 Rosa chinensis HOM05D003604 ORTHO05D004110 3.2e-26 121.3 72 75.0
Hund23359 Selenicereus undatus HOM05D003604 ORTHO05D004110 3.2e-26 121.3 70 80.0
Migut.H01877 Erythranthe guttata HOM05D003604 ORTHO05D004110 4.2e-26 120.9 74 74.3
vmacro01905 Vaccinium macrocarpon HOM05D003604 ORTHO05D004110 4.2e-26 120.9 77 71.4
Gohir.A01G072200 Gossypium hirsutum HOM05D003604 ORTHO05D004110 5.5e-26 120.6 77 71.4
Psat7g153240 Pisum sativum HOM05D003604 ORTHO05D004110 7.1e-26 120.2 74 71.6
Actinidia00329 Actinidia chinensis HOM05D003604 ORTHO05D004110 9.3e-26 119.8 69 76.8
Phvul.011G146000 Phaseolus vulgaris HOM05D003604 ORTHO05D004110 9.3e-26 119.8 69 76.8
Potri.011G130100 Populus trichocarpa HOM05D003604 ORTHO05D004110 9.3e-26 119.8 77 74.0
QL08p014504 Quercus lobata HOM05D003604 ORTHO05D004110 9.3e-26 119.8 69 75.4
TPR.G4607 Trifolium pratense HOM05D003604 ORTHO05D004110 9.3e-26 119.8 74 70.3
GSVIVG01014550001 Vitis vinifera HOM05D003604 ORTHO05D004110 9.3e-26 119.8 77 72.7
Gorai.002G080000 Gossypium raimondii HOM05D003604 ORTHO05D004110 1.2e-25 119.4 77 68.8
Lalb_Chr01g0006251 Lupinus albus HOM05D003604 ORTHO05D004110 1.2e-25 119.4 69 76.8
TAR624G0573 Trochodendron aralioides HOM05D003604 ORTHO05D004110 1.2e-25 119.4 74 74.3
Glyma.08G209500 Glycine max HOM05D003604 ORTHO05D004110 1.6e-25 119.0 69 75.4
Oeu060531.1 Olea europaea HOM05D003604 ORTHO05D004110 1.6e-25 119.0 77 75.3
VMungo1127G0543 Vigna mungo HOM05D003604 ORTHO05D004110 1.6e-25 119.0 69 76.8
MELO3C018155.2 Cucumis melo HOM05D003604 ORTHO05D004110 2.1e-25 118.6 69 76.8
CSS0042481 Camellia sinensis var. sinensis HOM05D003604 ORTHO05D004110 2.7e-25 118.2 77 68.8
MD11G1230000 Malus domestica HOM05D003604 ORTHO05D004110 2.7e-25 118.2 69 76.8
Lalb_Chr03g0030231 Lupinus albus HOM05D003604 ORTHO05D004110 3.5e-25 117.9 69 75.4
ClCG05G014980 Citrullus lanatus HOM05D003604 ORTHO05D004110 4.6e-25 117.5 69 75.4
FvH4_6g24821 Fragaria vesca HOM05D003604 ORTHO05D004110 4.6e-25 117.5 72 72.2
Glyma.06G263000 Glycine max HOM05D003604 ORTHO05D004110 4.6e-25 117.5 69 73.9
SalBow7G1717 Salvia bowleyana HOM05D003604 ORTHO05D004110 4.6e-25 117.5 73 75.3
Gohir.D01G059000 Gossypium hirsutum HOM05D003604 ORTHO05D004110 6.0e-25 117.1 77 68.8
Sed0007679 Sechium edule HOM05D003604 ORTHO05D004110 7.9e-25 116.7 69 75.4
Sed0017338 Sechium edule HOM05D003604 ORTHO05D004110 7.9e-25 116.7 69 75.4
Lj1g0019007 Lotus japonicus HOM05D003604 ORTHO05D004110 1.0e-24 116.3 69 73.9
AL3G34530 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 1.3e-24 115.9 69 75.4
DCAR_010007 Daucus carota HOM05D003604 ORTHO05D004110 1.3e-24 115.9 69 75.4
Ciclev10008689m.g Citrus clementina HOM05D003604 ORTHO05D004110 2.3e-24 115.2 73 72.6
ECA240G0441 Erigeron canadensis HOM05D003604 ORTHO05D004110 2.3e-24 115.2 73 74.0
Lj3g0004246 Lotus japonicus HOM05D003604 ORTHO05D004110 3.0e-24 114.8 73 68.5
arahy.Tifrunner.gnm1.ann1.6T0369 Arachis hypogaea HOM05D003604 ORTHO05D004110 3.9e-24 114.4 69 72.5
arahy.Tifrunner.gnm1.ann1.B3WQY9 Arachis hypogaea HOM05D003604 ORTHO05D004110 3.9e-24 114.4 69 72.5
Thhalv10020966m.g Eutrema salsugineum HOM05D003604 ORTHO05D004110 5.1e-24 114.0 69 75.4
CsaV3_3G022660 Cucumis sativus L. HOM05D003604 ORTHO05D004110 8.7e-24 113.2 69 73.9
Carub.0003s2063 Capsella rubella HOM05D003604 ORTHO05D004110 1.1e-23 112.8 69 73.9
Aa31LG10G3370 Aethionema arabicum HOM05D003604 ORTHO05D004110 1.9e-23 112.1 77 68.8
Ca_26239_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 2.5e-23 111.7 69 69.6
Ca_30045_v3 Cicer arietinum L. HOM05D003604 ORTHO05D004110 2.5e-23 111.7 69 69.6
Medtr6g003920 Medicago truncatula HOM05D003604 ORTHO05D004110 2.5e-23 111.7 69 69.6
BcaC05g28298 Brassica carinata HOM05D003604 ORTHO05D004110 3.3e-23 111.3 70 75.7
A05p28150 Brassica napus HOM05D003604 ORTHO05D004110 3.3e-23 111.3 70 75.7
C05p43600 Brassica napus HOM05D003604 ORTHO05D004110 3.3e-23 111.3 70 75.7
BraA05t21698Z Brassica rapa HOM05D003604 ORTHO05D004110 3.3e-23 111.3 70 75.7
AT3G20650 Arabidopsis thaliana HOM05D003604 ORTHO05D004110 4.3e-23 110.9 69 72.5
Sp3g18690 Schrenkiella parvula HOM05D003604 ORTHO05D004110 5.7e-23 110.5 70 75.7
CARHR096460 Cardamine hirsuta HOM05D003604 ORTHO05D004110 7.4e-23 110.2 70 74.3
BcaB06g26132 Brassica carinata HOM05D003604 ORTHO05D004110 9.6e-23 109.8 70 75.7
Manes.06G031600 Manihot esculenta HOM05D003604 ORTHO05D004110 9.6e-23 109.8 64 76.6
BolC5t33080H Brassica oleracea HOM05D003604 ORTHO05D004110 1.3e-22 109.4 70 74.3
THA.LOC104817889 Tarenaya hassleriana HOM05D003604 ORTHO05D004110 1.3e-22 109.4 76 69.7
MBI18_g38395_MAGBIO Magnolia biondii HOM05D003604 ORTHO05D004110 1.6e-22 109.0 69 73.9
Medtr7g110030 Medicago truncatula HOM05D003604 ORTHO05D004110 8.2e-22 106.7 69 66.7
EL10Ac4g08013 Beta vulgaris HOM05D003604 ORTHO05D004110 1.1e-21 106.3 76 67.1
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 1.8e-21 105.5 69 66.7
arahy.Tifrunner.gnm1.ann1.QJA41V Arachis hypogaea HOM05D003604 ORTHO05D004110 1.8e-21 105.5 69 66.7
DCAR_022503 Daucus carota HOM05D003604 ORTHO05D004110 1.8e-21 105.5 69 65.2
Nn2g10854 Nelumbo nucifera HOM05D003604 ORTHO05D004110 1.8e-21 105.5 74 68.9
Os08g0180000 Oryza sativa ssp. japonica HOM05D003604 ORTHO05D004110 2.4e-21 105.1 70 70.0
Zm00001eb054690 Zea mays HOM05D003604 ORTHO05D004110 2.4e-21 105.1 70 71.4
Aqoxy1G03843 Aquilegia oxysepala HOM05D003604 ORTHO05D004110 3.1e-21 104.8 74 67.6
BcaC09g49007 Brassica carinata HOM05D003604 ORTHO05D004110 3.1e-21 104.8 71 73.2
PSO210G6085 Papaver somniferum HOM05D003604 ORTHO05D004110 9.0e-21 103.2 74 66.2
AL1G58850 Arabidopsis lyrata HOM05D003604 ORTHO05D004110 1.2e-20 102.8 79 62.0
PSO832G4297 Papaver somniferum HOM05D003604 ORTHO05D004110 2.6e-20 101.7 70 68.6
C01p43560 Brassica napus HOM05D003604 ORTHO05D004110 3.4e-20 101.3 71 69.0
BolC1t04317H Brassica oleracea HOM05D003604 ORTHO05D004110 3.4e-20 101.3 71 69.0
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.0e-19 99.8 69 69.6
CDE05G1290 Ceratophyllum demersum HOM05D003604 ORTHO05D004110 2.2e-19 98.6 69 63.8
AUR62029554 Chenopodium quinoa HOM05D003604 ORTHO05D004110 3.8e-19 97.8 70 68.6
SHI31882 Sapria himalayana HOM05D003604 ORTHO05D004110 8.5e-19 96.7 72 59.7
HPP92_020594 Vanilla planifolia HOM05D003604 ORTHO05D004110 8.5e-19 96.7 78 60.3
A01p34140 Brassica napus HOM05D003604 ORTHO05D004110 3.2e-18 94.7 71 64.8
BraA01t03518Z Brassica rapa HOM05D003604 ORTHO05D004110 3.2e-18 94.7 71 64.8
AUR62041148 Chenopodium quinoa HOM05D003604 ORTHO05D004110 4.2e-18 94.4 70 68.6
CiPaw.12G124800 Carya illinoinensis HOM05D003604 ORTHO05D004110 5.5e-18 94.0 58 70.7
BcaB04g20641 Brassica carinata HOM05D003604 ORTHO05D004110 1.6e-17 92.4 71 62.0
CARHR041070 Cardamine hirsuta HOM05D003604 ORTHO05D004110 6.1e-17 90.5 75 57.3
COL.COLO4_09536 Corchorus olitorius HOM05D003604 ORTHO05D004110 7.9e-17 90.1 46 84.8
PSO675G0229 Papaver somniferum HOM05D003604 ORTHO05D004110 1.0e-16 89.7 74 59.5
BolC2t09773H Brassica oleracea HOM05D003604 ORTHO05D004110 1.8e-16 89.0 58 74.1
AUR62034817 Chenopodium quinoa HOM05D003604 ORTHO05D004110 1.8e-16 89.0 90 54.4
PSO541G3797 Papaver somniferum HOM05D003604 ORTHO05D004110 2.3e-16 88.6 75 60.0
ATR0721G088 Amborella trichopoda HOM05D003604 ORTHO05D004110 3.0e-16 88.2 71 59.2
BcaC03g16005 Brassica carinata HOM05D003604 ORTHO05D004110 3.9e-16 87.8 58 74.1
Sabra11G0117500 Salix brachista HOM05D003604 ORTHO05D004110 1.1e-15 86.3 44 88.6
arahy.Tifrunner.gnm1.ann1.R4IE40 Arachis hypogaea HOM05D003604 ORTHO05D004110 3.3e-15 84.7 44 81.8
BolC5t33536H Brassica oleracea HOM05D003604 ORTHO05D004110 3.3e-15 84.7 71 60.6
Sc03g0009420 Simmondsia chinensis HOM05D003604 ORTHO05D004110 3.3e-15 84.7 44 84.1
BolC5t33545H Brassica oleracea HOM05D003604 ORTHO05D004110 1.3e-14 82.8 46 82.6
Lj6A334T24 Lonicera japonica HOM05D003604 ORTHO05D004110 4.8e-14 80.9 44 84.1
AUR62029271 Chenopodium quinoa HOM05D003604 ORTHO05D004110 2.4e-13 78.6 44 81.8
BcaC05g28687 Brassica carinata HOM05D003604 ORTHO05D004110 9.1e-13 76.6 44 79.5
A09p03180 Brassica napus HOM05D003604 ORTHO05D004110 9.1e-13 76.6 63 58.7
BraA07t29089Z Brassica rapa HOM05D003604 ORTHO05D004110 9.1e-13 76.6 63 58.7
SMO266G0094 Selaginella moellendorffii HOM05D003604 ORTHO05D004110 3.4e-12 74.7 68 55.9
BolC4t23530H Brassica oleracea HOM05D003604 ORTHO05D004110 4.5e-12 74.3 62 59.7
Mapoly0053s0007 Marchantia polymorpha HOM05D003604 ORTHO05D004110 1.2e-09 66.2 53 58.5
FvH4_1g24830 Fragaria vesca HOM05D003604 ORTHO05D004110 2.7e-09 65.1 48 64.6
FAN19G0122 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-09 64.7 48 64.6
FAN19G2257 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.6e-09 64.7 48 64.6
FAN24G0344 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.6e-09 64.3 46 60.9
FvH4_2g07560 Fragaria vesca HOM05D003604 ORTHO05D004110 1.0e-08 63.2 46 60.9
FvH4_2g07570 Fragaria vesca HOM05D003604 ORTHO05D004110 1.0e-08 63.2 46 60.9
FvH4_2g07650 Fragaria vesca HOM05D003604 ORTHO05D004110 1.0e-08 63.2 46 60.9
FAN15G1062 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.0e-08 63.2 46 60.9
FAN15G2058 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.0e-08 63.2 46 60.9
FAN22G2085 Fragaria x ananassa HOM05D003604 ORTHO05D004110 1.0e-08 63.2 46 60.9
CBR_g12774 Chara braunii HOM05D003604 ORTHO05D004110 2.3e-08 62.0 59 50.8
FAN24G2186 Fragaria x ananassa HOM05D003604 ORTHO05D004110 3.0e-08 61.6 46 58.7
FvH4_2g07500 Fragaria vesca HOM05D003604 ORTHO05D004110 5.1e-08 60.8 46 58.7
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.0e-07 58.9 45 62.2
FAN24G1060 Fragaria x ananassa HOM05D003604 ORTHO05D004110 4.4e-07 57.8 46 58.7
Pp3c23_20110 Physcomitrium patens HOM05D003604 ORTHO05D004110 3.7e-06 54.7 55 45.5


User provided reference genes

Program Settings