Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.8e-102 375.9 196 100.0
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-83 313.5 211 81.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 3.1e-73 278.9 252 64.7
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.9e-70 269.6 223 67.3
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 1.2e-66 256.9 251 60.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.8e-66 255.8 252 59.1
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 3.1e-65 252.3 204 68.1
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.4e-48 195.3 246 47.2
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 2.1e-45 186.4 118 79.7
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 2.7e-45 186.0 248 42.7
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 2.7e-45 186.0 248 42.7
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.5e-45 185.7 248 42.3
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 6.0e-45 184.9 248 45.6
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 3.0e-44 182.6 248 45.2
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 6.6e-44 181.4 246 43.9
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 4.3e-43 178.7 247 44.5
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 1.1e-41 174.1 252 42.5
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 1.4e-41 173.7 198 48.0
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.8e-41 173.3 246 42.7
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 3.1e-41 172.6 248 42.3
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 3.1e-41 172.6 245 42.0
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 4.0e-41 172.2 198 47.0
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 1.5e-40 170.2 247 42.5
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.6e-40 169.5 245 41.6
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 1.7e-39 166.8 161 50.9
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.2e-39 166.4 200 43.5
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 4.9e-39 165.2 261 39.8
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.9e-38 163.3 199 44.2
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 2.4e-38 162.9 202 46.5
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 3.2e-38 162.5 198 46.0
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 4.2e-38 162.2 181 49.7
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 9.3e-38 161.0 203 47.3
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 4.6e-37 158.7 200 46.5
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 6.0e-37 158.3 200 45.5
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.0e-36 157.5 198 44.9
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 1.3e-36 157.1 198 43.9
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 1.3e-36 157.1 198 44.9
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 1.3e-36 157.1 198 44.9
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 3.0e-36 156.0 203 44.3
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 6.7e-36 154.8 198 43.4
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 1.1e-35 154.1 198 44.9
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.5e-35 153.7 197 41.1
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.9e-35 153.3 197 42.1
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.5e-35 152.9 198 43.9
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 2.5e-35 152.9 198 43.4
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 3.3e-35 152.5 200 44.5
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 4.3e-35 152.1 198 44.9
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 7.4e-35 151.4 200 44.5
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 7.4e-35 151.4 248 38.7
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 1.3e-34 150.6 204 39.7
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 1.6e-34 150.2 198 43.9
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 2.1e-34 149.8 246 37.8
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 4.8e-34 148.7 206 42.2
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.1e-33 147.5 214 40.7
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.4e-33 147.1 200 41.0
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 1.8e-33 146.7 204 40.2
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.8e-33 146.7 198 42.4
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 2.4e-33 146.4 206 41.3
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 2.4e-33 146.4 197 44.7
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.0e-33 145.6 211 41.7
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 5.3e-33 145.2 198 41.4
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 6.9e-33 144.8 161 47.2
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 6.9e-33 144.8 198 42.9
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 1.5e-32 143.7 198 41.4
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 1.5e-32 143.7 200 42.5
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 2.6e-32 142.9 198 41.4
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 2.6e-32 142.9 197 44.2
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.6e-32 142.9 164 54.9
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 2.6e-32 142.9 170 45.9
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 3.4e-32 142.5 206 39.3
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 1.3e-31 140.6 198 42.9
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 1.7e-31 140.2 206 38.8
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 1.1e-30 137.5 200 41.5
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 1.9e-30 136.7 214 41.1
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 2.5e-30 136.3 201 41.8
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 3.2e-30 136.0 213 37.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 4.2e-30 135.6 261 35.2
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.2e-29 134.0 205 40.0
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.6e-29 133.7 231 37.2
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 2.1e-29 133.3 204 42.2
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 2.1e-29 133.3 198 40.9
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 2.7e-29 132.9 204 37.3
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 2.7e-29 132.9 199 38.7
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 4.6e-29 132.1 205 39.0
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 6.0e-29 131.7 194 39.7
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.9e-29 131.3 205 38.0
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 1.0e-28 131.0 200 40.5
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 1.8e-28 130.2 213 37.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 3.0e-28 129.4 172 41.9
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 1.1e-27 127.5 194 39.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.9e-27 126.7 157 45.2
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 7.4e-27 124.8 200 36.5
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 9.6e-27 124.4 158 47.5
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.3e-26 124.0 154 42.9
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 2.1e-26 123.2 202 40.1
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 3.7e-26 122.5 203 36.9
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 6.2e-26 121.7 205 37.1
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 8.2e-26 121.3 198 39.9
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 5.3e-25 118.6 205 38.0
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 1.5e-24 117.1 202 37.6
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 4.5e-24 115.5 200 37.0
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 4.5e-24 115.5 200 37.0
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 4.5e-24 115.5 200 37.0
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 3.8e-23 112.5 200 37.0
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 1.9e-22 110.2 200 36.0
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 3.2e-22 109.4 204 36.3
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 3.5e-21 105.9 116 41.4
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 6.0e-21 105.1 199 36.7
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 6.7e-20 101.7 172 36.0
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 6.7e-20 101.7 172 36.0
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 6.7e-20 101.7 112 45.5
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 1.1e-19 100.9 205 32.2
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 9.7e-19 97.8 101 57.4
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 8.2e-18 94.7 133 42.1
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 8.2e-18 94.7 153 33.3
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 8.2e-18 94.7 112 43.8
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 2.4e-17 93.2 129 40.3
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 2.4e-17 93.2 112 42.9
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 6.9e-17 91.7 214 33.6
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 6.9e-17 91.7 184 34.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 9.0e-17 91.3 182 37.4
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 1.5e-16 90.5 136 41.2
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 2.0e-16 90.1 200 31.5
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 7.7e-16 88.2 94 51.1
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 1.3e-15 87.4 204 29.9
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 1.7e-15 87.0 196 31.6
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.5e-15 85.1 136 39.0
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 1.9e-14 83.6 196 34.7
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 9.4e-14 81.3 95 45.3
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 9.4e-14 81.3 74 59.5
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 2.7e-13 79.7 198 30.3
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 1.4e-12 77.4 200 31.5
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 5.1e-12 75.5 72 59.7
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 2.5e-11 73.2 70 51.4
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.2e-10 70.1 55 58.2
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-08 64.3 69 39.1
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 1.5e-08 63.9 111 36.9
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 2.6e-08 63.2 66 50.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 4.5e-08 62.4 66 53.0
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 1.3e-07 60.8 83 42.2
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 1.1e-06 57.8 132 33.3
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 1.4e-06 57.4 64 50.0
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 1.4e-06 57.4 64 50.0


User provided reference genes

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