Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 9.2e-113 410.2 206 100.0
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 1.1e-100 370.2 206 91.7
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.2e-91 340.1 205 82.0
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.5e-91 339.7 205 82.0
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 1.3e-87 326.6 205 77.6
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 7.6e-75 284.3 170 87.1
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 1.5e-59 233.4 208 55.3
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 3.8e-58 228.8 207 55.6
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 1.4e-57 226.9 138 80.4
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 7.2e-57 224.6 202 55.0
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 9.4e-57 224.2 202 55.0
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 2.3e-55 219.5 207 54.6
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 2.3e-55 219.5 202 56.4
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 1.1e-54 217.2 207 55.1
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 1.1e-54 217.2 201 54.7
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 3.7e-53 212.2 207 52.7
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 1.4e-52 210.3 201 55.7
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 2.4e-52 209.5 206 54.9
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 9.1e-52 207.6 208 53.8
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 5.9e-51 204.9 202 50.0
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 2.2e-50 203.0 202 50.0
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 5.0e-50 201.8 211 50.2
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 5.0e-50 201.8 207 51.2
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 6.5e-50 201.4 193 56.5
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 1.1e-49 200.7 234 47.9
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 3.2e-49 199.1 212 49.1
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 1.6e-48 196.8 203 51.7
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 2.1e-48 196.4 207 51.2
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 1.4e-47 193.7 205 49.8
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 1.8e-47 193.4 203 51.7
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 6.7e-47 191.4 206 49.5
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 8.8e-47 191.0 205 52.7
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 8.8e-47 191.0 207 50.7
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 1.5e-46 190.3 202 51.0
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 1.5e-46 190.3 203 51.7
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 2.0e-46 189.9 207 49.8
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 7.5e-46 188.0 201 51.7
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 9.7e-46 187.6 206 48.5
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 9.7e-46 187.6 209 51.2
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 1.7e-45 186.8 206 48.5
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 2.2e-45 186.4 202 48.0
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 2.8e-45 186.0 211 51.2
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.8e-44 183.3 208 50.5
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 1.2e-43 180.6 205 46.3
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 2.0e-43 179.9 202 47.5
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 2.0e-43 179.9 207 47.3
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 5.9e-43 178.3 207 46.9
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 7.7e-43 177.9 204 47.5
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 1.0e-42 177.6 169 50.9
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 1.7e-42 176.8 202 47.5
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 5.0e-42 175.3 208 46.6
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 6.5e-42 174.9 206 46.6
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 6.5e-42 174.9 199 47.2
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 1.1e-41 174.1 161 55.9
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 2.5e-41 172.9 215 44.7
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 9.4e-41 171.0 198 45.5
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 1.2e-40 170.6 205 44.4
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 2.1e-40 169.9 190 46.8
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 6.1e-40 168.3 207 46.9
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 6.1e-40 168.3 197 48.2
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 6.1e-40 168.3 208 47.1
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 8.0e-40 167.9 207 43.5
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 8.0e-40 167.9 206 44.7
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 1.0e-39 167.5 200 47.5
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 1.8e-39 166.8 186 48.4
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 3.0e-39 166.0 206 44.2
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 5.2e-39 165.2 204 47.1
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 5.2e-39 165.2 190 46.3
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 6.8e-39 164.9 199 45.2
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 1.2e-38 164.1 186 48.4
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 2.6e-38 162.9 186 48.9
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 3.4e-38 162.5 159 52.8
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 3.4e-38 162.5 199 43.7
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 4.4e-38 162.2 207 44.4
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 5.7e-38 161.8 205 44.4
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 5.7e-38 161.8 204 44.6
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 5.7e-38 161.8 187 48.7
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 7.5e-38 161.4 204 44.1
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 1.3e-37 160.6 205 44.4
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 1.3e-37 160.6 205 44.4
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 1.3e-37 160.6 205 44.9
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.8e-37 159.5 187 46.5
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 6.3e-37 158.3 206 43.7
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 6.3e-37 158.3 206 43.7
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 1.4e-36 157.1 207 41.1
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 9.1e-36 154.5 188 47.3
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 3.5e-35 152.5 166 50.6
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 7.7e-35 151.4 209 42.1
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 1.3e-34 150.6 146 55.5
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 3.3e-33 146.0 211 42.7
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 3.6e-32 142.5 142 54.2
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 2.3e-31 139.8 207 40.1
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 5.7e-30 135.2 179 41.9
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 1.7e-29 133.7 112 58.9
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 3.1e-28 129.4 100 64.0
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 3.8e-26 122.5 255 34.9
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 1.9e-25 120.2 109 53.2
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 2.8e-24 116.3 139 43.2
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 4.7e-24 115.5 115 55.7
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 1.4e-20 104.0 147 42.9
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 1.4e-20 104.0 203 35.0
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 4.1e-20 102.4 190 36.3
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 3.3e-17 92.8 193 35.8
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.7e-13 79.3 136 41.2
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.7e-13 79.3 136 41.2
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.7e-13 79.3 136 41.2
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 3.0e-10 69.7 107 39.3
BcaB02g08407 Brassica carinata HOM05D001009 ORTHO05D000829 1.1e-09 67.8 202 27.2
CARHR165660 Cardamine hirsuta HOM05D001009 ORTHO05D000829 2.5e-09 66.6 205 28.3
Thhalv10010645m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.5e-09 66.6 204 28.4
BcaC02g09772 Brassica carinata HOM05D001009 ORTHO05D000829 3.3e-09 66.2 202 30.7
C04p36760 Brassica napus HOM05D001009 ORTHO05D000829 3.3e-09 66.2 202 30.7
MSTRG.11173 Avicennia marina HOM05D001009 ORTHO05D000829 4.3e-09 65.9 197 25.9
Carub.0005s2235 Capsella rubella HOM05D001009 ORTHO05D000829 4.3e-09 65.9 202 30.2
MCO05G729 Micromonas commoda HOM05D001009 ORTHO05D000829 4.3e-09 65.9 115 36.5
Os06g0326500 Oryza sativa ssp. japonica HOM05D001009 ORTHO05D000829 4.3e-09 65.9 205 28.8
Sp5g06870 Schrenkiella parvula HOM05D001009 ORTHO05D000829 4.3e-09 65.9 204 27.5
arahy.Tifrunner.gnm1.ann1.U1AIJ2 Arachis hypogaea HOM05D001009 ORTHO05D000829 7.3e-09 65.1 207 29.5
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 7.3e-09 65.1 203 27.6
MD00G1141400 Malus domestica HOM05D001009 ORTHO05D000829 9.5e-09 64.7 203 29.6
Manes.11G064600 Manihot esculenta HOM05D001009 ORTHO05D000829 9.5e-09 64.7 201 25.4
Phvul.010G159900 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 9.5e-09 64.7 203 24.1
THA.LOC104816579 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 1.2e-08 64.3 211 28.4
arahy.Tifrunner.gnm1.ann1.B3W4AW Arachis hypogaea HOM05D001009 ORTHO05D000829 1.6e-08 63.9 207 29.5
TWI77G0127 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 1.6e-08 63.9 204 27.5
arahy.Tifrunner.gnm1.ann1.4F3MJE Arachis hypogaea HOM05D001009 ORTHO05D000829 2.1e-08 63.5 209 31.1
A04p04370 Brassica napus HOM05D001009 ORTHO05D000829 2.8e-08 63.2 201 27.9
BraA04t16147Z Brassica rapa HOM05D001009 ORTHO05D000829 2.8e-08 63.2 201 27.9
TWI74G1509 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 2.8e-08 63.2 196 28.1
TWI15G0684 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 4.7e-08 62.4 202 30.7
AT3G55605 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 8.1e-08 61.6 205 28.3
Carub.0002s2683 Capsella rubella HOM05D001009 ORTHO05D000829 8.1e-08 61.6 198 23.2
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 8.1e-08 61.6 202 27.7
SGA_v2.0_scaffold5G02758 Striga asiatica HOM05D001009 ORTHO05D000829 1.1e-07 61.2 195 24.1
Potri.010G198500 Populus trichocarpa HOM05D001009 ORTHO05D000829 1.4e-07 60.8 192 27.1
Nn8g39766 Nelumbo nucifera HOM05D001009 ORTHO05D000829 1.8e-07 60.5 204 26.5
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 1.8e-07 60.5 159 27.7
Aa31LG5G19830 Aethionema arabicum HOM05D001009 ORTHO05D000829 3.1e-07 59.7 192 28.1
PSO339G2987 Papaver somniferum HOM05D001009 ORTHO05D000829 4.0e-07 59.3 214 28.5
CANSAT56G0269 Cannabis sativa HOM05D001009 ORTHO05D000829 5.2e-07 58.9 204 23.5
CANSAT56G1474 Cannabis sativa HOM05D001009 ORTHO05D000829 6.8e-07 58.5 203 27.1
Mapoly0001s0479 Marchantia polymorpha HOM05D001009 ORTHO05D000829 6.8e-07 58.5 204 27.0
Sabra10G0152900 Salix brachista HOM05D001009 ORTHO05D000829 6.8e-07 58.5 200 27.5
Sc06g0007180 Simmondsia chinensis HOM05D001009 ORTHO05D000829 6.8e-07 58.5 205 24.9
AT1G80720 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 8.9e-07 58.2 198 22.7
CsaV3_7G031950 Cucumis sativus L. HOM05D001009 ORTHO05D000829 8.9e-07 58.2 199 25.6
Sp1g14170 Schrenkiella parvula HOM05D001009 ORTHO05D000829 8.9e-07 58.2 199 23.6
CDE06G2341 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.5e-06 57.4 205 26.8
Potri.010G198600 Populus trichocarpa HOM05D001009 ORTHO05D000829 1.5e-06 57.4 193 28.5
PGR031G1509 Punica granatum HOM05D001009 ORTHO05D000829 1.5e-06 57.4 202 25.2
unitig_0.g1108 Utricularia gibba HOM05D001009 ORTHO05D000829 1.5e-06 57.4 197 24.4
VMungo0331G0712 Vigna mungo HOM05D001009 ORTHO05D000829 2.0e-06 57.0 204 21.6
Aqoxy1G00831 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 2.6e-06 56.6 198 27.8
Thhalv10014436m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 2.6e-06 56.6 202 26.7
MD12G1150500 Malus domestica HOM05D001009 ORTHO05D000829 2.6e-06 56.6 193 28.0
Zm00001eb381960 Zea mays HOM05D001009 ORTHO05D000829 2.6e-06 56.6 200 26.0
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 3.4e-06 56.2 197 25.9
Sp5g35030 Schrenkiella parvula HOM05D001009 ORTHO05D000829 3.4e-06 56.2 189 23.8
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 4.4e-06 55.8 114 30.7
CARHR016390 Cardamine hirsuta HOM05D001009 ORTHO05D000829 4.4e-06 55.8 207 24.2
Oeu010366.1 Olea europaea HOM05D001009 ORTHO05D000829 4.4e-06 55.8 200 25.0
TWI34G0265 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 4.4e-06 55.8 193 24.4
AL6G11270 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 5.8e-06 55.5 206 25.7
AUR62012459 Chenopodium quinoa HOM05D001009 ORTHO05D000829 5.8e-06 55.5 197 26.4
AUR62031583 Chenopodium quinoa HOM05D001009 ORTHO05D000829 5.8e-06 55.5 197 26.9
Lj3g0004016 Lotus japonicus HOM05D001009 ORTHO05D000829 7.5e-06 55.1 199 26.6
Psat7g259840 Pisum sativum HOM05D001009 ORTHO05D000829 7.5e-06 55.1 201 21.4
SalBow7G3573 Salvia bowleyana HOM05D001009 ORTHO05D000829 7.5e-06 55.1 161 28.6
THA.LOC104812438 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 7.5e-06 55.1 197 23.4
CiPaw.01G292100 Carya illinoinensis HOM05D001009 ORTHO05D000829 9.9e-06 54.7 199 26.6
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 9.9e-06 54.7 202 25.2
Sabra10G0152800 Salix brachista HOM05D001009 ORTHO05D000829 9.9e-06 54.7 210 26.2


User provided reference genes

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