Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.9e-113 412.5 208 100.0
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 4.6e-112 407.9 208 99.0
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 3.0e-111 405.2 208 98.1
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 4.8e-109 397.9 208 96.2
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 9.0e-108 393.7 208 94.7
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.8e-106 388.3 205 94.1
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.4e-103 379.8 208 90.9
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.3e-93 346.7 209 82.8
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.1e-92 342.0 209 81.3
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.5e-91 338.2 210 79.0
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.9e-90 335.5 207 81.6
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 5.0e-90 334.7 209 80.4
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.2e-89 332.0 208 78.4
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 5.5e-89 331.3 207 80.7
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 9.4e-89 330.5 208 81.2
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 3.0e-87 325.5 205 79.0
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.1e-86 323.6 207 77.8
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 7.4e-86 320.9 208 76.9
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 7.4e-86 320.9 206 76.7
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 9.7e-86 320.5 207 78.3
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.7e-85 319.7 207 77.8
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 6.3e-85 317.8 208 76.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.1e-84 317.0 209 76.6
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.1e-84 315.5 199 78.9
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 4.1e-84 315.1 207 75.4
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 5.3e-84 314.7 209 73.7
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 7.0e-84 314.3 205 75.1
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 7.0e-84 314.3 205 75.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.2e-83 313.5 214 72.4
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 2.0e-83 312.8 203 75.9
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.0e-83 312.8 209 73.2
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 4.5e-83 311.6 208 73.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.9e-82 308.9 205 75.1
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 5.0e-82 308.1 209 74.6
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.5e-82 307.8 216 71.3
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 6.5e-82 307.8 206 75.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 8.5e-82 307.4 208 74.0
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 8.5e-82 307.4 208 74.0
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.5e-81 306.6 208 73.6
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.5e-81 306.6 185 81.6
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 3.2e-81 305.4 209 73.2
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 3.2e-81 305.4 207 71.5
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 3.2e-81 305.4 209 71.8
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.2e-81 305.1 206 73.3
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 7.2e-81 304.3 209 72.7
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 9.4e-81 303.9 194 75.3
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.6e-80 303.1 188 79.8
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.6e-80 303.1 192 76.6
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 2.1e-80 302.8 206 71.8
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.7e-80 302.4 201 74.1
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 3.6e-80 302.0 208 72.6
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 4.7e-80 301.6 199 75.4
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 8.0e-80 300.8 201 74.1
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 8.0e-80 300.8 194 76.3
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 8.0e-80 300.8 205 70.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 8.0e-80 300.8 205 70.7
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.0e-79 300.4 205 70.7
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.4e-79 300.1 195 75.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.3e-79 299.3 190 76.3
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 3.0e-79 298.9 205 71.7
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 5.2e-79 298.1 187 77.0
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 6.7e-79 297.7 227 67.8
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 8.8e-79 297.4 191 75.9
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 3.3e-78 295.4 201 70.6
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 2.2e-77 292.7 214 67.8
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 2.8e-77 292.4 201 70.6
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 2.8e-77 292.4 201 70.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.7e-77 292.0 243 64.2
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 8.2e-77 290.8 207 70.0
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.1e-76 290.4 201 69.7
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.4e-76 290.0 194 71.1
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.4e-76 290.0 201 69.7
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 9.1e-76 287.3 206 71.4
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.6e-75 286.6 206 70.4
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 2.0e-75 286.2 191 73.3
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 3.5e-75 285.4 188 71.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 4.5e-75 285.0 204 67.6
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 4.5e-75 285.0 209 70.8
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.7e-74 283.1 211 67.3
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 2.2e-74 282.7 204 67.2
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.9e-74 282.3 196 71.9
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.9e-74 282.3 193 76.2
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.9e-74 282.3 224 67.0
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 2.9e-74 282.3 190 75.3
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.9e-73 279.6 219 66.2
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.9e-73 279.6 189 71.4
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.5e-73 279.3 207 66.2
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 3.2e-73 278.9 196 70.9
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.2e-73 278.5 182 74.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 5.5e-73 278.1 193 71.5
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 5.5e-73 278.1 194 71.1
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 7.2e-73 277.7 200 71.0
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 9.4e-73 277.3 196 70.9
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 9.4e-73 277.3 204 68.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.1e-72 276.2 188 70.7
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.7e-72 275.8 203 65.5
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 4.7e-72 275.0 203 68.0
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.0e-71 273.9 194 71.1
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 1.8e-71 273.1 188 69.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 3.0e-71 272.3 194 69.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.0e-71 271.9 204 66.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 8.8e-71 270.8 204 66.2
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.8e-71 270.8 204 66.2
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.8e-71 270.8 204 66.2
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.5e-70 270.0 198 68.7
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 8.3e-69 264.2 169 74.0
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.4e-68 263.5 191 71.2
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.5e-67 258.5 228 59.6
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.9e-66 255.8 188 65.4
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 4.7e-64 248.4 160 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.2e-62 243.8 187 64.7
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.3e-61 240.4 197 65.5
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.8e-60 236.5 182 63.2
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.3e-58 230.3 134 82.1
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 1.1e-57 227.3 183 64.5
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.5e-57 226.1 158 72.8
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 2.8e-56 222.6 156 71.2
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 8.0e-56 221.1 173 60.7
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 6.8e-55 218.0 158 69.0
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 9.8e-54 214.2 152 69.1
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.7e-53 213.4 152 71.1
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 9.2e-52 207.6 156 67.9
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.9e-50 202.2 109 89.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 9.8e-46 187.6 118 76.3
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 5.6e-41 171.8 93 87.1
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.6e-35 152.1 206 44.2
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.2e-32 144.1 92 70.7
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.1e-32 141.4 203 45.8
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-31 139.4 98 73.5
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-31 139.4 98 73.5
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.0e-30 136.7 120 64.2
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 7.8e-27 124.8 137 45.3
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 3.9e-26 122.5 163 38.7
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 5.1e-26 122.1 133 43.6
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 8.7e-26 121.3 101 63.4
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.5e-25 120.6 116 53.4
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 2.7e-19 99.8 75 65.3
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 3.1e-15 86.3 85 52.9
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.8e-13 79.3 129 43.4
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.0e-10 69.7 41 70.7
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 7.4e-09 65.1 60 51.7
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 3.1e-07 59.7 39 71.8


User provided reference genes

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