Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.2e-23 110.2 54 100.0
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.4e-22 107.5 53 98.1
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 7.0e-20 99.8 53 90.6
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.6e-19 98.6 53 88.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.5e-19 97.1 53 90.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.3e-18 95.5 53 84.9
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.7e-18 95.1 53 84.9
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 5.0e-18 93.6 53 88.7
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 4.2e-17 90.5 53 86.8
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.8e-16 87.8 53 83.0
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.8e-15 85.1 53 83.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.1e-12 75.9 53 69.8
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.4e-12 75.5 53 71.7
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.4e-12 75.5 53 73.6
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.1e-12 73.9 53 69.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.1e-12 73.9 53 71.7
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 7.0e-12 73.2 53 64.2
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 7.0e-12 73.2 53 64.2
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 7.0e-12 73.2 53 69.8
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 3.5e-11 70.9 53 66.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 5.9e-11 70.1 55 67.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.3e-10 68.9 52 67.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.3e-10 68.9 53 67.9
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.6e-10 66.2 53 66.0
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.9e-09 65.1 57 59.6
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 2.5e-09 64.7 54 66.7
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 3.3e-09 64.3 54 64.8
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.3e-09 64.3 54 64.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.3e-09 64.3 53 62.3
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 5.6e-09 63.5 53 66.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 7.3e-09 63.2 53 60.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 7.3e-09 63.2 35 88.6
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 9.5e-09 62.8 53 64.2
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.5e-09 62.8 53 60.4
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.2e-08 62.4 53 62.3
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.2e-08 62.4 62 56.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.2e-08 62.4 40 72.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.2e-08 62.4 53 64.2
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.2e-08 62.4 56 66.1
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.2e-08 62.4 56 66.1
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.2e-08 62.4 53 64.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.6e-08 62.0 53 64.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.6e-08 62.0 53 60.4
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.1e-08 61.6 52 65.4
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.1e-08 61.6 53 60.4
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.8e-08 61.2 53 62.3
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.8e-08 61.2 47 68.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 3.6e-08 60.8 53 64.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.7e-08 60.5 53 58.5
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.7e-08 60.5 53 58.5
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.7e-08 60.5 53 58.5
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.7e-08 60.5 53 58.5
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.7e-08 60.5 44 68.2
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.7e-08 60.5 52 63.5
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 6.1e-08 60.1 53 58.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 6.1e-08 60.1 54 64.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 6.1e-08 60.1 54 64.8
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.1e-08 60.1 53 58.5
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.1e-08 60.1 35 77.1
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.1e-08 60.1 54 63.0
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 6.1e-08 60.1 35 77.1
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.0e-08 59.7 38 76.3
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 8.0e-08 59.7 38 76.3
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 8.0e-08 59.7 45 66.7
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.0e-07 59.3 53 56.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.0e-07 59.3 34 79.4
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.0e-07 59.3 53 60.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.0e-07 59.3 53 56.6
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-07 59.3 53 56.6
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.4e-07 58.9 33 78.8
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.4e-07 58.9 54 64.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.4e-07 58.9 44 68.2
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.4e-07 58.9 44 68.2
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.4e-07 58.9 35 77.1
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.4e-07 58.9 44 70.5
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.4e-07 58.9 35 77.1
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.4e-07 58.9 53 58.5
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.8e-07 58.5 53 60.4
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.8e-07 58.5 44 68.2
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.8e-07 58.5 41 73.2
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.8e-07 58.5 45 66.7
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.3e-07 58.2 44 63.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.3e-07 58.2 44 63.6
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 2.3e-07 58.2 33 81.8
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.3e-07 58.2 44 65.9
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.1e-07 57.8 44 68.2
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 3.1e-07 57.8 44 65.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.0e-07 57.4 44 63.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 4.0e-07 57.4 44 65.9
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 5.2e-07 57.0 33 78.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 5.2e-07 57.0 35 74.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.2e-07 57.0 44 65.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 5.2e-07 57.0 44 65.9
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.2e-07 57.0 44 65.9
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 5.2e-07 57.0 44 65.9
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 5.2e-07 57.0 44 65.9
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 6.8e-07 56.6 53 56.6
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 6.8e-07 56.6 52 59.6
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 6.8e-07 56.6 40 70.0
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 8.9e-07 56.2 36 69.4
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 8.9e-07 56.2 34 79.4
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 8.9e-07 56.2 55 56.4
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.2e-06 55.8 52 55.8
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.2e-06 55.8 44 63.6
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.2e-06 55.8 44 63.6
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-06 55.8 34 73.5
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-06 55.8 34 73.5
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 1.2e-06 55.8 44 63.6
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.2e-06 55.8 44 63.6
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.5e-06 55.5 53 56.6
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.5e-06 55.5 53 60.4
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.5e-06 55.5 34 76.5
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.5e-06 55.5 35 71.4
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.0e-06 55.1 39 69.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.6e-06 54.7 46 65.2
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 3.4e-06 54.3 35 71.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.4e-06 54.3 54 59.3
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.4e-06 53.9 48 60.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 5.8e-06 53.5 42 66.7
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 5.8e-06 53.5 30 83.3
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.5e-06 53.1 31 77.4
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 7.5e-06 53.1 52 59.6
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 9.8e-06 52.8 43 62.8


User provided reference genes

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