Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 4.2e-122 441.4 230 100.0
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 6.7e-112 407.5 231 93.5
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 9.7e-111 403.7 231 93.1
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 2.0e-100 369.4 234 85.0
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 9.1e-85 317.4 238 74.4
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.2e-84 317.0 217 79.7
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 4.2e-82 308.5 230 73.9
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 5.2e-80 301.6 231 68.4
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 2.8e-78 295.8 232 68.1
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 4.1e-77 292.0 232 68.1
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 4.1e-77 292.0 232 65.1
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 5.3e-77 291.6 232 65.5
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 2.0e-76 289.7 231 64.9
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 7.7e-76 287.7 230 64.8
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 1.0e-75 287.3 230 64.8
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 2.9e-75 285.8 231 66.2
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 6.5e-75 284.6 231 64.1
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 8.5e-75 284.3 231 64.9
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 1.1e-74 283.9 230 64.3
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 1.5e-74 283.5 224 68.8
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 3.2e-74 282.3 230 65.7
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 3.2e-74 282.3 230 65.7
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 3.2e-74 282.3 232 66.4
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 5.5e-74 281.6 227 64.8
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 9.4e-74 280.8 230 64.8
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 9.4e-74 280.8 230 63.5
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 1.2e-73 280.4 230 62.6
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 2.7e-73 279.3 230 63.9
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 2.7e-73 279.3 231 64.9
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 3.6e-73 278.9 231 65.4
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 6.1e-73 278.1 230 62.6
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.0e-72 277.3 231 64.1
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 1.8e-72 276.6 232 66.8
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 2.3e-72 276.2 230 61.7
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 2.3e-72 276.2 231 63.2
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 8.8e-72 274.2 233 63.9
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.5e-71 273.5 231 64.5
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 2.0e-71 273.1 230 60.4
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 2.6e-71 272.7 230 63.0
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 3.4e-71 272.3 230 63.9
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 3.4e-71 272.3 231 65.4
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 3.4e-71 272.3 232 62.1
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 5.7e-71 271.6 231 64.9
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 9.8e-71 270.8 231 61.9
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 9.8e-71 270.8 230 61.7
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.3e-70 270.4 233 59.7
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 1.3e-70 270.4 231 61.0
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 3.7e-70 268.9 224 65.2
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.4e-69 266.9 233 60.5
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 1.8e-69 266.5 231 60.2
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 3.1e-69 265.8 231 61.5
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 4.1e-69 265.4 230 60.9
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 5.4e-69 265.0 231 64.1
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 5.4e-69 265.0 224 63.8
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.2e-68 263.8 230 59.6
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 3.5e-68 262.3 224 60.7
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 3.5e-68 262.3 234 62.0
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 4.5e-68 261.9 225 62.7
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 4.5e-68 261.9 230 63.0
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 5.9e-68 261.5 234 62.4
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 7.7e-68 261.2 230 59.6
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.3e-67 260.4 231 60.2
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 1.3e-67 260.4 230 62.2
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 1.7e-67 260.0 231 60.6
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 1.7e-67 260.0 230 62.2
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 1.7e-67 260.0 230 60.4
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 2.9e-67 259.2 223 60.5
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 3.8e-67 258.8 224 60.7
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 3.8e-67 258.8 234 59.4
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 3.8e-67 258.8 224 60.3
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 5.0e-67 258.5 230 61.7
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 5.0e-67 258.5 229 60.7
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 1.1e-66 257.3 230 59.6
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 3.3e-66 255.8 231 59.7
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 7.2e-66 254.6 223 60.5
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 6.1e-65 251.5 225 62.2
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 2.3e-64 249.6 225 60.9
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 3.0e-64 249.2 224 60.7
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 1.5e-63 246.9 282 51.4
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 8.3e-62 241.1 227 57.7
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 1.8e-61 240.0 242 55.0
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 4.5e-60 235.3 230 56.1
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.0e-59 234.2 230 54.8
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 5.0e-59 231.9 230 53.9
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 5.6e-58 228.4 230 52.6
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 6.1e-57 224.9 230 52.2
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 8.0e-57 224.6 252 51.6
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 8.0e-57 224.6 230 51.7
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 5.2e-56 221.9 230 54.3
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 5.2e-56 221.9 210 58.1
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 5.2e-56 221.9 231 52.4
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 1.1e-53 214.2 256 48.4
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.4e-53 213.0 230 51.7
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 3.2e-53 212.6 223 52.9
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.7e-52 209.5 210 54.8
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 4.6e-52 208.8 224 52.7
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 6.0e-52 208.4 231 51.5
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 2.5e-50 203.0 230 48.3
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 1.2e-49 200.7 238 46.6
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 1.8e-48 196.8 233 48.9
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.3e-48 196.4 232 50.9
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 5.2e-48 195.3 223 51.6
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 5.2e-48 195.3 219 49.8
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 5.8e-47 191.8 165 63.6
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 7.5e-47 191.4 207 53.6
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.1e-45 187.6 166 62.0
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 1.0e-43 181.0 217 50.7
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 1.4e-40 170.6 162 58.6
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.3e-38 164.1 161 57.8
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 4.0e-32 142.5 109 67.0
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-31 140.6 261 36.4
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 2.9e-30 136.3 95 72.6
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 5.4e-29 132.1 92 68.5
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 4.6e-28 129.0 145 53.8
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 7.8e-28 128.3 110 60.9
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.0e-27 127.9 223 37.7
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.3e-27 127.5 106 63.2
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.6e-25 120.6 193 41.5
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 9.9e-23 111.3 196 37.2
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 3.8e-22 109.4 279 31.5
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 3.5e-20 102.8 74 71.6
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 5.1e-19 99.0 63 76.2
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 1.1e-18 97.8 172 39.5
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.1e-18 97.8 172 39.5
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 3.3e-18 96.3 91 52.7
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 1.3e-17 94.4 91 52.7
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 3.6e-17 92.8 91 51.6
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 5.3e-16 89.0 91 50.5
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 5.4e-13 79.0 92 53.3
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 3.5e-12 76.3 57 63.2
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 6.7e-11 72.0 77 44.2
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 4.3e-10 69.3 55 60.0
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 4.8e-09 65.9 75 50.7
Nitab4.5_0012588g0010 Nicotiana tabacum HOM05D000681 ORTHO05D003965 9.0e-08 61.6 37 91.9


User provided reference genes

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