Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401010988 Solanum tuberosum HOM05D007382 ORTHO05D009012 4.6e-91 337.8 163 100.0
Sopen10g033880 Solanum pennellii HOM05D007382 ORTHO05D009012 3.4e-86 321.6 163 94.5
Solyc10g084440.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 1.0e-82 310.1 163 91.4
CAN.G435.4 Capsicum annuum HOM05D007382 ORTHO05D009012 5.3e-63 244.6 146 79.5
Nitab4.5_0007103g0020 Nicotiana tabacum HOM05D007382 ORTHO05D009012 9.1e-63 243.8 152 77.0
Nitab4.5_0000202g0370 Nicotiana tabacum HOM05D007382 ORTHO05D009012 1.3e-61 240.0 158 72.8
Peaxi162Scf00472g00081 Petunia axillaris HOM05D007382 ORTHO05D009012 3.3e-57 225.3 163 68.1
PGSC0003DMG400038088 Solanum tuberosum HOM05D007382 ORTHO05D009012 2.3e-50 202.6 132 73.5
PGSC0003DMG400037466 Solanum tuberosum HOM05D007382 ORTHO05D009012 3.8e-45 185.3 132 67.4
Sopen09g026050 Solanum pennellii HOM05D007382 ORTHO05D009012 8.5e-45 184.1 133 68.4
Solyc07g014660.3 Solanum lycopersicum HOM05D007382 ORTHO05D009012 6.1e-43 177.9 133 67.7
Sopen07g005520 Solanum pennellii HOM05D007382 ORTHO05D009012 6.1e-43 177.9 133 67.7
CSS0017861 Camellia sinensis var. sinensis HOM05D007382 ORTHO05D009012 4.0e-42 175.3 140 59.3
Dinv37282 Davidia involucrata HOM05D007382 ORTHO05D009012 1.7e-40 169.9 136 57.4
Oeu029114.1 Olea europaea HOM05D007382 ORTHO05D009012 1.1e-39 167.2 153 56.2
Hma1.2p1_0111F.1_g053520 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 5.3e-39 164.9 152 54.6
Hma1.2p1_0111F.1_g053480 Hydrangea macrophylla HOM05D007382 ORTHO05D009012 4.5e-38 161.8 152 54.6
MSTRG.19120 Avicennia marina HOM05D007382 ORTHO05D009012 5.9e-38 161.4 130 60.8
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 5.9e-38 161.4 140 56.4
TAR369G0081 Trochodendron aralioides HOM05D007382 ORTHO05D009012 1.0e-37 160.6 138 52.9
Cc06_g15490 Coffea canephora HOM05D007382 ORTHO05D009012 3.8e-37 158.7 138 52.9
Ciclev10012925m.g Citrus clementina HOM05D007382 ORTHO05D009012 3.2e-36 155.6 135 57.0
PGSC0003DMG400035622 Solanum tuberosum HOM05D007382 ORTHO05D009012 5.5e-36 154.8 122 61.5
Duzib093G1372 Durio zibethinus HOM05D007382 ORTHO05D009012 6.1e-35 151.4 125 59.2
Lsat_1_v5_gn_2_111101 Lactuca sativa HOM05D007382 ORTHO05D009012 1.0e-34 150.6 141 50.4
Nn3g20330 Nelumbo nucifera HOM05D007382 ORTHO05D009012 1.4e-34 150.2 153 49.0
Lsat_1_v5_gn_2_110741 Lactuca sativa HOM05D007382 ORTHO05D009012 2.3e-34 149.4 141 50.4
QL07p045887 Quercus lobata HOM05D007382 ORTHO05D009012 5.2e-34 148.3 129 54.3
Nn2g10574 Nelumbo nucifera HOM05D007382 ORTHO05D009012 6.8e-34 147.9 138 53.6
Thecc.05G050100 Theobroma cacao HOM05D007382 ORTHO05D009012 8.8e-34 147.5 136 52.9
MELO3C003080.2 Cucumis melo HOM05D007382 ORTHO05D009012 1.2e-33 147.1 154 48.1
HanXRQChr07g0195861 Helianthus annuus HOM05D007382 ORTHO05D009012 2.0e-33 146.4 137 51.8
SGA_v2.0_scaffold126G33863 Striga asiatica HOM05D007382 ORTHO05D009012 2.0e-33 146.4 154 49.4
Lsat_1_v5_gn_2_110841 Lactuca sativa HOM05D007382 ORTHO05D009012 3.4e-33 145.6 141 48.9
MD12G1130200 Malus domestica HOM05D007382 ORTHO05D009012 4.4e-33 145.2 138 50.0
Sabra06G0166500 Salix brachista HOM05D007382 ORTHO05D009012 1.7e-32 143.3 141 53.9
FvH4_6g14870 Fragaria vesca HOM05D007382 ORTHO05D009012 2.2e-32 142.9 126 57.1
FAN14G4413 Fragaria x ananassa HOM05D002855 ORTHO05D009012 2.2e-32 142.9 126 57.1
CsaV3_4G024470 Cucumis sativus L. HOM05D007382 ORTHO05D009012 3.7e-32 142.1 154 47.4
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 4.8e-32 141.7 133 52.6
Gohir.D04G117000 Gossypium hirsutum HOM05D007382 ORTHO05D009012 4.8e-32 141.7 133 52.6
Gorai.009G421900 Gossypium raimondii HOM05D007382 ORTHO05D009012 4.8e-32 141.7 133 52.6
FAN05G3594 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.3e-32 141.4 126 56.3
FAN09G0189 Fragaria x ananassa HOM05D007382 ORTHO05D009012 6.3e-32 141.4 126 55.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.3e-32 141.4 126 55.6
Manes.09G071800 Manihot esculenta HOM05D007382 ORTHO05D009012 8.3e-32 141.0 146 50.0
Ah.08g212080 Amaranthus hybridus HOM05D007382 ORTHO05D009012 1.1e-31 140.6 138 50.0
Gohir.A04G077800 Gossypium hirsutum HOM05D007382 ORTHO05D009012 1.8e-31 139.8 133 52.6
Potri.006G216000 Populus trichocarpa HOM05D007382 ORTHO05D009012 1.8e-31 139.8 140 50.7
Migut.J00393 Erythranthe guttata HOM05D007382 ORTHO05D009012 2.4e-31 139.4 161 46.0
RcHm_v2.0_Chr3g0468081 Rosa chinensis HOM05D007382 ORTHO05D009012 4.1e-31 138.7 121 57.0
COL.COLO4_10307 Corchorus olitorius HOM05D007382 ORTHO05D009012 7.0e-31 137.9 120 56.7
Haze_20685 Corylus avellana HOM05D007382 ORTHO05D009012 7.0e-31 137.9 123 49.6
CiPaw.10G139200 Carya illinoinensis HOM05D007382 ORTHO05D009012 9.1e-31 137.5 141 48.2
HanXRQChr10g0297271 Helianthus annuus HOM05D007382 ORTHO05D009012 9.1e-31 137.5 137 49.6
Prupe.6G245200 Prunus persica HOM05D007382 ORTHO05D009012 9.1e-31 137.5 123 53.7
ClCG04G008690 Citrullus lanatus HOM05D007382 ORTHO05D009012 1.2e-30 137.1 133 47.4
ECA238G1385 Erigeron canadensis HOM05D007382 ORTHO05D009012 1.2e-30 137.1 124 53.2
CANSAT80G2903 Cannabis sativa HOM05D007382 ORTHO05D009012 1.6e-30 136.7 125 52.0
MBI04_g28758_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.7e-30 134.4 130 50.0
MBI04_g38440_MAGBIO Magnolia biondii HOM05D007382 ORTHO05D009012 7.7e-30 134.4 130 50.0
Sc01g0003740 Simmondsia chinensis HOM05D007382 ORTHO05D009012 1.0e-29 134.0 141 50.4
ATR0709G053 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.7e-29 133.3 134 51.5
EL10Ac7g17270 Beta vulgaris HOM05D007382 ORTHO05D009012 1.7e-29 133.3 139 52.5
AUR62036838 Chenopodium quinoa HOM05D007382 ORTHO05D009012 1.7e-29 133.3 138 48.6
Sed0019756 Sechium edule HOM05D007382 ORTHO05D009012 1.7e-29 133.3 146 44.5
Hund10951 Selenicereus undatus HOM05D007382 ORTHO05D009012 5.0e-29 131.7 149 45.0
Cfa017470 Carpinus fangiana HOM05D007382 ORTHO05D009012 6.6e-29 131.3 123 48.8
Eucgr.A01209 Eucalyptus grandis HOM05D007382 ORTHO05D009012 2.5e-28 129.4 135 48.9
AL5G39780 Arabidopsis lyrata HOM05D007382 ORTHO05D009012 4.2e-28 128.6 128 50.8
Carub.0005s2494 Capsella rubella HOM05D007382 ORTHO05D009012 4.2e-28 128.6 129 49.6
TWI77G0838 Tripterygium wilfordii HOM05D007382 ORTHO05D009012 1.2e-27 127.1 137 47.4
Psat7g058560 Pisum sativum HOM05D007382 ORTHO05D009012 2.1e-27 126.3 123 48.0
PSO384G2862 Papaver somniferum HOM05D007382 ORTHO05D009012 1.8e-26 123.2 161 41.0
Zm00001eb148770 Zea mays HOM05D007382 ORTHO05D009012 1.8e-26 123.2 122 47.5
Ca_08808_v3 Cicer arietinum L. HOM05D007382 ORTHO05D009012 2.3e-26 122.9 135 45.2
Glyma.03G175900 Glycine max HOM05D007382 ORTHO05D009012 3.0e-26 122.5 122 45.1
Medtr7g100200 Medicago truncatula HOM05D007382 ORTHO05D009012 5.2e-26 121.7 143 43.4
Aa31LG10G12820 Aethionema arabicum HOM05D007382 ORTHO05D009012 6.8e-26 121.3 120 51.7
CDE05G2022 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 1.2e-25 120.6 117 50.4
Sp5g04630 Schrenkiella parvula HOM05D007382 ORTHO05D009012 1.5e-25 120.2 129 45.7
Aqoxy5G00351 Aquilegia oxysepala HOM05D007382 ORTHO05D009012 2.0e-25 119.8 122 45.1
Glyma.19G176400 Glycine max HOM05D007382 ORTHO05D009012 5.7e-25 118.2 132 46.2
BcaC02g09988 Brassica carinata HOM05D007382 ORTHO05D009012 9.8e-25 117.5 128 44.5
Medtr7g100230 Medicago truncatula HOM05D007382 ORTHO05D009012 9.8e-25 117.5 129 44.2
Sed0025265 Sechium edule HOM05D007382 ORTHO05D009012 9.8e-25 117.5 133 44.4
CARHR168440 Cardamine hirsuta HOM05D007382 ORTHO05D009012 2.2e-24 116.3 110 54.5
Phvul.001G173000 Phaseolus vulgaris HOM05D007382 ORTHO05D009012 6.3e-24 114.8 127 46.5
unitig_744.g24666 Utricularia gibba HOM05D007382 ORTHO05D009012 6.3e-24 114.8 129 41.9
BcaB02g08277 Brassica carinata HOM05D007382 ORTHO05D009012 1.4e-23 113.6 132 43.2
AT3G58090 Arabidopsis thaliana HOM05D000180 ORTHO05D000099 4.5e-22 108.6 102 54.9
VMungo1383G3160 Vigna mungo HOM05D007382 ORTHO05D009012 4.5e-22 108.6 122 45.1
Lj1g0005181 Lotus japonicus HOM05D007382 ORTHO05D009012 2.3e-21 106.3 114 46.5
CiPaw.15G123900 Carya illinoinensis HOM05D007382 ORTHO05D009012 1.1e-20 104.0 141 39.7
TPR.G21464 Trifolium pratense HOM05D007382 ORTHO05D009012 1.5e-20 103.6 162 38.9
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 4.3e-20 102.1 124 44.4
C04p34300 Brassica napus HOM05D000180 ORTHO05D000099 9.5e-20 100.9 100 49.0
BolC4t24990H Brassica oleracea HOM05D000180 ORTHO05D000099 2.1e-19 99.8 100 49.0
Os01g0835600 Oryza sativa ssp. japonica HOM05D007382 ORTHO05D009012 3.6e-19 99.0 114 43.0
A04p02730 Brassica napus HOM05D000180 ORTHO05D000099 1.4e-18 97.1 113 46.9
BraA04t15999Z Brassica rapa HOM05D000180 ORTHO05D000099 1.4e-18 97.1 113 46.9
HPP92_019795 Vanilla planifolia HOM05D007382 ORTHO05D009012 1.4e-18 97.1 108 45.4
SEGI_34495 Sequoiadendron giganteum HOM05D007382 ORTHO05D009012 1.5e-17 93.6 145 40.0
VMungo1080G1211 Vigna mungo HOM05D007382 ORTHO05D009012 1.1e-15 87.4 78 48.7
CDE09G1151 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.4e-15 85.1 116 41.4
Lalb_Chr20g0113021 Lupinus albus HOM05D007382 ORTHO05D009012 1.6e-14 83.6 90 43.3
Lalb_Chr25g0289341 Lupinus albus HOM05D007382 ORTHO05D009012 3.9e-13 79.0 85 47.1
CDE12G0689 Ceratophyllum demersum HOM05D007382 ORTHO05D009012 5.2e-10 68.6 71 43.7
ATR0665G317 Amborella trichopoda HOM05D007382 ORTHO05D009012 1.5e-09 67.0 54 55.6
SEGI_03776 Sequoiadendron giganteum HOM05D016889 ORTHO05D009012 1.5e-09 67.0 68 47.1
CBR_g33928 Chara braunii HOM05D001312 ORTHO05D001832 1.3e-08 63.9 77 45.5
SMO147G0006 Selaginella moellendorffii HOM05D016889 ORTHO05D026570 1.3e-08 63.9 65 47.7
ATR0829G079 Amborella trichopoda HOM05D016889 ORTHO05D026570 1.7e-08 63.5 53 52.8
CBR_g41746 Chara braunii HOM05D007382 ORTHO05D009012 2.2e-08 63.2 95 34.7
TAR633G0943 Trochodendron aralioides HOM05D007382 ORTHO05D009012 2.9e-08 62.8 106 35.8


User provided reference genes

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