Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401010496 Solanum tuberosum HOM05D007524 ORTHO05D009475 1.4e-68 262.7 124 100.0
Sopen01g004060 Solanum pennellii HOM05D007524 ORTHO05D009475 1.4e-31 139.8 74 90.5
Solyc01g008520.3 Solanum lycopersicum HOM05D007524 ORTHO05D009475 1.8e-31 139.4 74 90.5
Nitab4.5_0000825g0060 Nicotiana tabacum HOM05D007524 ORTHO05D009475 7.7e-30 134.0 74 85.1
Nitab4.5_0001747g0050 Nicotiana tabacum HOM05D007524 ORTHO05D009475 1.8e-26 122.9 82 73.2
Peaxi162Scf00032g00619 Petunia axillaris HOM05D007524 ORTHO05D009475 1.3e-24 116.7 66 84.8
Hma1.2p1_0057F.1_g032020 Hydrangea macrophylla HOM05D007524 ORTHO05D009475 4.0e-18 95.1 74 63.5
Dinv25593 Davidia involucrata HOM05D007524 ORTHO05D009475 6.8e-18 94.4 60 71.7
GSVIVG01022414001 Vitis vinifera HOM05D007524 ORTHO05D009475 1.6e-14 83.2 77 54.5
Haze_11736 Corylus avellana HOM05D007524 ORTHO05D009475 2.7e-14 82.4 60 61.7
vmacro18683 Vaccinium macrocarpon HOM05D007524 ORTHO05D009475 2.7e-14 82.4 57 66.7
Atru.chr11.1209 Acer truncatum HOM05D007524 ORTHO05D009475 4.5e-14 81.6 80 55.0
Prupe.1G344400 Prunus persica HOM05D007524 ORTHO05D009475 5.9e-14 81.3 51 72.5
Thecc.02G312000 Theobroma cacao HOM05D007524 ORTHO05D009475 5.9e-14 81.3 74 55.4
Migut.C01263 Erythranthe guttata HOM05D007524 ORTHO05D009475 7.7e-14 80.9 74 59.5
Gohir.D13G086900 Gossypium hirsutum HOM05D007524 ORTHO05D009475 1.7e-13 79.7 83 48.2
Gorai.013G099200 Gossypium raimondii HOM05D007524 ORTHO05D009475 1.7e-13 79.7 83 48.2
Gohir.A13G091600 Gossypium hirsutum HOM05D007524 ORTHO05D009475 2.2e-13 79.3 74 52.7
CiPaw.06G059700 Carya illinoinensis HOM05D007524 ORTHO05D009475 3.8e-13 78.6 51 66.7
Glyma.11G104200 Glycine max HOM05D007524 ORTHO05D009475 3.8e-13 78.6 51 70.6
Cc00_g05860 Coffea canephora HOM05D007524 ORTHO05D009475 5.0e-13 78.2 70 57.1
Duzib248G0930 Durio zibethinus HOM05D007524 ORTHO05D009475 5.0e-13 78.2 61 63.9
Actinidia07457 Actinidia chinensis HOM05D007524 ORTHO05D009475 6.5e-13 77.8 57 64.9
CANSAT11G0990 Cannabis sativa HOM05D007524 ORTHO05D009475 1.5e-12 76.6 52 65.4
Aqoxy5G02489 Aquilegia oxysepala HOM05D007524 ORTHO05D009475 1.9e-12 76.3 51 68.6
Glyma.12G029200 Glycine max HOM05D007524 ORTHO05D009475 1.9e-12 76.3 51 68.6
TAR628G0034 Trochodendron aralioides HOM05D007524 ORTHO05D009475 2.5e-12 75.9 50 70.0
MD16G1006200 Malus domestica HOM05D007524 ORTHO05D009475 3.2e-12 75.5 61 59.0
Nn5g27870 Nelumbo nucifera HOM05D007524 ORTHO05D009475 4.2e-12 75.1 42 78.6
Rhsim08G0000700 Rhododendron simsii HOM05D007524 ORTHO05D009475 5.5e-12 74.7 60 55.0
Psat7g173160 Pisum sativum HOM05D007524 ORTHO05D009475 1.6e-11 73.2 56 60.7
PGR119G1695 Punica granatum HOM05D007524 ORTHO05D009475 1.6e-11 73.2 59 61.0
PSO017G6978 Papaver somniferum HOM05D007524 ORTHO05D009475 2.7e-11 72.4 74 47.3
PSO063G3654 Papaver somniferum HOM05D007524 ORTHO05D009475 3.6e-11 72.0 74 48.6
Phvul.011G032400 Phaseolus vulgaris HOM05D007524 ORTHO05D009475 4.7e-11 71.6 51 64.7
Manes.03G082500 Manihot esculenta HOM05D007524 ORTHO05D009475 8.0e-11 70.9 90 43.3
Oeu032986.1 Olea europaea HOM05D007524 ORTHO05D009475 8.0e-11 70.9 48 70.8
Ca_03043_v3 Cicer arietinum L. HOM05D007524 ORTHO05D009475 1.0e-10 70.5 56 58.9
RcHm_v2.0_Chr4g0446351 Rosa chinensis HOM05D007524 ORTHO05D009475 1.0e-10 70.5 61 57.4
VMungo1127G1744 Vigna mungo HOM05D007524 ORTHO05D009475 1.0e-10 70.5 51 62.7
Medtr4g074200 Medicago truncatula HOM05D007524 ORTHO05D009475 1.4e-10 70.1 52 61.5
THA.LOC104818453 Tarenaya hassleriana HOM05D007524 ORTHO05D009475 1.8e-10 69.7 63 52.4
Aa31LG1G17400 Aethionema arabicum HOM05D007524 ORTHO05D009475 2.3e-10 69.3 63 50.8
CsaV3_5G013190 Cucumis sativus L. HOM05D007524 ORTHO05D009475 8.8e-10 67.4 70 51.4
TPR.G21554 Trifolium pratense HOM05D007524 ORTHO05D009475 8.8e-10 67.4 56 57.1
FAN17G0147 Fragaria x ananassa HOM05D007524 ORTHO05D009475 1.2e-09 67.0 61 57.4
Sed0011089 Sechium edule HOM05D007524 ORTHO05D009475 1.2e-09 67.0 47 66.0
MELO3C020032.2 Cucumis melo HOM05D007524 ORTHO05D009475 1.5e-09 66.6 47 63.8
FAN07G0447 Fragaria x ananassa HOM05D007524 ORTHO05D009475 2.0e-09 66.2 61 55.7
FvH4_4g36590 Fragaria vesca HOM05D007524 ORTHO05D009475 3.4e-09 65.5 61 55.7
FAN12G0445 Fragaria x ananassa HOM05D007524 ORTHO05D009475 3.4e-09 65.5 61 55.7
Eucgr.J00844 Eucalyptus grandis HOM05D007524 ORTHO05D009475 4.4e-09 65.1 53 60.4
Sc06g0003090 Simmondsia chinensis HOM05D007524 ORTHO05D009475 5.7e-09 64.7 75 41.3
Lj3g0014826 Lotus japonicus HOM05D007524 ORTHO05D009475 9.8e-09 63.9 68 48.5
ATR0584G209 Amborella trichopoda HOM05D007524 ORTHO05D009475 2.8e-08 62.4 52 57.7
Lalb_Chr19g0139281 Lupinus albus HOM05D007524 ORTHO05D009475 2.8e-08 62.4 71 45.1
Carub.0008s2532 Capsella rubella HOM05D007524 ORTHO05D009475 6.3e-08 61.2 67 44.8
AL8G41910 Arabidopsis lyrata HOM05D007524 ORTHO05D009475 2.4e-07 59.3 67 43.3
Sp2g27600 Schrenkiella parvula HOM05D007524 ORTHO05D009475 4.1e-07 58.5 67 43.3
BcaC04g23318 Brassica carinata HOM05D007524 ORTHO05D009475 7.0e-07 57.8 51 54.9
C09p09780 Brassica napus HOM05D007524 ORTHO05D009475 7.0e-07 57.8 51 54.9
CARHR278490 Cardamine hirsuta HOM05D007524 ORTHO05D009475 7.0e-07 57.8 67 41.8
ECA247G1633 Erigeron canadensis HOM05D007524 ORTHO05D009475 7.0e-07 57.8 72 45.8
arahy.Tifrunner.gnm1.ann1.NAL0L4 Arachis hypogaea HOM05D007524 ORTHO05D009475 9.2e-07 57.4 50 56.0
arahy.Tifrunner.gnm1.ann1.SSM27G Arachis hypogaea HOM05D007524 ORTHO05D009475 9.2e-07 57.4 50 56.0
A09p08680 Brassica napus HOM05D007524 ORTHO05D009475 9.2e-07 57.4 51 54.9
SGA_v2.0_scaffold118G32494 Striga asiatica HOM05D007524 ORTHO05D009475 9.2e-07 57.4 79 40.5
unitig_46.g18111 Utricularia gibba HOM05D007524 ORTHO05D009475 1.2e-06 57.0 60 48.3
EL10Ac4g08947 Beta vulgaris HOM05D007524 ORTHO05D009475 2.0e-06 56.2 71 45.1
AT5G64520 Arabidopsis thaliana HOM05D007524 ORTHO05D009475 2.7e-06 55.8 73 42.5
BcaB04g19971 Brassica carinata HOM05D007524 ORTHO05D009475 2.7e-06 55.8 51 51.0
Thhalv10005594m.g Eutrema salsugineum HOM05D007524 ORTHO05D009475 2.7e-06 55.8 53 49.1
Hund06881 Selenicereus undatus HOM05D007524 ORTHO05D009475 4.5e-06 55.1 41 58.5
AUR62039047 Chenopodium quinoa HOM05D007524 ORTHO05D009475 5.9e-06 54.7 50 54.0


User provided reference genes

Program Settings