Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401010456 Solanum tuberosum HOM05D004255 ORTHO05D004815 2.0e-94 350.9 387 100.0
Sopen10g033540 Solanum pennellii HOM05D004255 ORTHO05D004815 6.9e-71 272.7 144 95.1
Solyc10g084090.3 Solanum lycopersicum HOM05D004255 ORTHO05D004815 2.5e-68 264.2 144 93.1
Peaxi162Scf00311g00013 Petunia axillaris HOM05D004255 ORTHO05D004815 6.3e-48 196.4 141 68.1
Nitab4.5_0001297g0090 Nicotiana tabacum HOM05D004255 ORTHO05D004815 3.5e-46 190.7 153 62.1
Sopen10g033550 Solanum pennellii HOM05D004255 ORTHO05D004815 1.7e-45 188.3 139 64.7
Nitab4.5_0001297g0100 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.2e-45 188.0 139 66.2
Nitab4.5_0005518g0020 Nicotiana tabacum HOM05D004255 ORTHO05D004815 2.2e-45 188.0 140 65.7
PGSC0003DMG400010458 Solanum tuberosum HOM05D004255 ORTHO05D004815 4.2e-36 157.1 111 70.3
CAN.G1169.8 Capsicum annuum HOM05D004255 ORTHO05D004815 1.5e-33 148.7 166 48.8
DCAR_014992 Daucus carota HOM05D004255 ORTHO05D004815 2.6e-33 147.9 139 52.5
Dinv37304 Davidia involucrata HOM05D004255 ORTHO05D004815 8.3e-32 142.9 140 50.7
Cc06_g04130 Coffea canephora HOM05D004255 ORTHO05D004815 5.4e-31 140.2 135 50.4
Lsat_1_v5_gn_2_106641 Lactuca sativa HOM05D004255 ORTHO05D004815 5.4e-31 140.2 151 48.3
CSS0008426 Camellia sinensis var. sinensis HOM05D004255 ORTHO05D004815 5.0e-29 133.7 123 52.8
Rhsim04G0144500 Rhododendron simsii HOM05D004255 ORTHO05D004815 5.0e-29 133.7 136 47.1
HanXRQChr07g0206501 Helianthus annuus HOM05D004255 ORTHO05D004815 2.5e-28 131.3 147 49.0
GSVIVG01025719001 Vitis vinifera HOM05D004255 ORTHO05D004815 2.5e-28 131.3 138 49.3
QL07p044001 Quercus lobata HOM05D004255 ORTHO05D004815 2.6e-25 121.3 127 50.4
Sc20g0005250 Simmondsia chinensis HOM05D004255 ORTHO05D004815 2.6e-25 121.3 140 43.6
CiPaw.09G173800 Carya illinoinensis HOM05D004255 ORTHO05D004815 3.7e-24 117.5 138 42.8
Gohir.D09G143800 Gossypium hirsutum HOM05D004255 ORTHO05D004815 8.3e-24 116.3 139 43.9
Gorai.006G165100 Gossypium raimondii HOM05D004255 ORTHO05D004815 8.3e-24 116.3 139 43.9
CsaV3_3G035890 Cucumis sativus L. HOM05D004255 ORTHO05D004815 1.1e-23 115.9 151 40.4
Manes.13G072800 Manihot esculenta HOM05D004255 ORTHO05D004815 1.1e-23 115.9 151 41.7
Ah.08g211800 Amaranthus hybridus HOM05D004255 ORTHO05D004815 2.4e-23 114.8 147 37.4
TWI75G0856 Tripterygium wilfordii HOM05D004255 ORTHO05D004815 7.0e-23 113.2 140 41.4
Duzib168G2269 Durio zibethinus HOM05D004255 ORTHO05D004815 1.2e-22 112.5 149 36.9
Thecc.09G346900 Theobroma cacao HOM05D004255 ORTHO05D004815 5.9e-22 110.2 140 40.0
Oeu047722.1 Olea europaea HOM05D004255 ORTHO05D004815 1.3e-21 109.0 102 51.0
Duzib170G0445 Durio zibethinus HOM05D004255 ORTHO05D004815 1.7e-21 108.6 140 37.9
SalBow2G0953 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.3e-21 108.2 125 46.4
SalBow3G3143 Salvia bowleyana HOM05D004255 ORTHO05D004815 2.3e-21 108.2 125 45.6
Lsat_1_v5_gn_2_99540 Lactuca sativa HOM05D004255 ORTHO05D004815 2.9e-21 107.8 148 36.5
Ciclev10011284m.g Citrus clementina HOM05D004255 ORTHO05D004815 3.8e-21 107.5 131 39.7
Duzib106G1941 Durio zibethinus HOM05D004255 ORTHO05D004815 3.8e-21 107.5 139 39.6
Lj4g0021155 Lotus japonicus HOM05D004255 ORTHO05D004815 6.6e-21 106.7 149 41.6
Aa31LG5G4720 Aethionema arabicum HOM05D004255 ORTHO05D004815 8.6e-21 106.3 140 39.3
SalBow2G0603 Salvia bowleyana HOM05D004255 ORTHO05D004815 1.1e-20 105.9 125 45.6
FvH4_6g16190 Fragaria vesca HOM05D004255 ORTHO05D004815 1.5e-20 105.5 147 39.5
FAN14G1284 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.5e-20 105.5 147 39.5
CANSAT54G2410 Cannabis sativa HOM05D004255 ORTHO05D004815 2.5e-20 104.8 146 34.2
Atru.chr12.340 Acer truncatum HOM05D004255 ORTHO05D004815 3.3e-20 104.4 139 41.0
Eucgr.K03591 Eucalyptus grandis HOM05D004255 ORTHO05D004815 4.3e-20 104.0 139 40.3
FAN05G2535 Fragaria x ananassa HOM05D004255 ORTHO05D004815 4.3e-20 104.0 147 38.8
Medtr1g045880 Medicago truncatula HOM05D004255 ORTHO05D004815 5.6e-20 103.6 153 40.5
MELO3C009348.2 Cucumis melo HOM05D004255 ORTHO05D004815 7.3e-20 103.2 149 36.2
TPR.G23963 Trifolium pratense HOM05D004255 ORTHO05D004815 7.3e-20 103.2 153 40.5
Rhsim02G0187700 Rhododendron simsii HOM05D004255 ORTHO05D004815 3.6e-19 100.9 106 44.3
arahy.Tifrunner.gnm1.ann1.RBUQ0I Arachis hypogaea HOM05D004255 ORTHO05D004815 4.7e-19 100.5 153 40.5
Atru.chr12.311 Acer truncatum HOM05D004255 ORTHO05D004815 6.1e-19 100.1 137 40.1
TAR633G0618 Trochodendron aralioides HOM05D004255 ORTHO05D004815 8.0e-19 99.8 155 38.7
Rhsim07G0183700 Rhododendron simsii HOM05D004255 ORTHO05D004815 1.8e-18 98.6 105 42.9
AL4G22170 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.3e-18 98.2 154 35.7
AT2G28050 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.3e-18 98.2 143 37.8
CARHR004520 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.3e-18 98.2 144 35.4
FAN09G2699 Fragaria x ananassa HOM05D004255 ORTHO05D004815 3.0e-18 97.8 147 37.4
PGR083G1347 Punica granatum HOM05D004255 ORTHO05D004815 5.2e-18 97.1 149 36.9
VMungo0720G0391 Vigna mungo HOM05D004255 ORTHO05D004815 5.2e-18 97.1 155 36.8
Carub.0004s0880 Capsella rubella HOM05D004255 ORTHO05D004815 6.8e-18 96.7 154 36.4
Nn2g11560 Nelumbo nucifera HOM05D004255 ORTHO05D004815 2.0e-17 95.1 108 43.5
Glyma.19G000100 Glycine max HOM05D004255 ORTHO05D004815 5.8e-17 93.6 148 36.5
TAR633G1109 Trochodendron aralioides HOM05D004255 ORTHO05D004815 5.8e-17 93.6 107 45.8
Phvul.007G232500 Phaseolus vulgaris HOM05D004255 ORTHO05D004815 9.8e-17 92.8 148 39.9
HPP92_026817 Vanilla planifolia HOM05D004255 ORTHO05D004815 9.8e-17 92.8 154 35.1
QL09p049934 Quercus lobata HOM05D004255 ORTHO05D004815 4.9e-16 90.5 138 37.7
Ca_11878_v3 Cicer arietinum L. HOM05D004255 ORTHO05D004815 1.1e-15 89.4 141 40.4
Migut.J00519 Erythranthe guttata HOM05D004255 ORTHO05D004815 1.9e-15 88.6 95 45.3
RcHm_v2.0_Chr5g0058011 Rosa chinensis HOM05D004255 ORTHO05D004815 1.9e-15 88.6 149 28.9
TAR633G2036 Trochodendron aralioides HOM05D004255 ORTHO05D004815 1.9e-15 88.6 92 47.8
CARHR120730 Cardamine hirsuta HOM05D004255 ORTHO05D004815 2.4e-15 88.2 153 34.0
Atru.chr8.1831 Acer truncatum HOM05D004255 ORTHO05D004815 5.4e-15 87.0 110 40.0
Atru.chr8.977 Acer truncatum HOM05D004255 ORTHO05D004815 7.0e-15 86.7 90 51.1
Prupe.6G107000 Prunus persica HOM05D004255 ORTHO05D004815 9.2e-15 86.3 117 35.0
SGA_v2.0_scaffold75G24836 Striga asiatica HOM05D004255 ORTHO05D004815 2.0e-14 85.1 103 37.9
Cfa011366 Carpinus fangiana HOM05D004255 ORTHO05D004815 2.7e-14 84.7 127 36.2
Hund05968 Selenicereus undatus HOM05D004255 ORTHO05D004815 4.6e-14 84.0 101 41.6
Cfa017586 Carpinus fangiana HOM05D004255 ORTHO05D004815 6.0e-14 83.6 94 47.9
Thhalv10016624m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 7.8e-14 83.2 151 32.5
Solyc06g010270.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 7.8e-14 83.2 149 31.5
Hma1.2p1_0297F.1_g117010 Hydrangea macrophylla HOM05D004255 ORTHO05D004815 1.7e-13 82.0 108 37.0
Cc01_g10670 Coffea canephora HOM05D004255 ORTHO05D004815 2.3e-13 81.6 109 38.5
Haze_22852 Corylus avellana HOM05D000010 ORTHO05D000302 2.3e-13 81.6 94 45.7
ECA238G3169 Erigeron canadensis HOM05D004255 ORTHO05D004815 2.3e-13 81.6 80 52.5
AUR62040455 Chenopodium quinoa HOM05D004255 ORTHO05D004815 3.0e-13 81.3 96 39.6
Atru.chr13.2607 Acer truncatum HOM05D004255 ORTHO05D004815 6.6e-13 80.1 79 48.1
BcaB02g10133 Brassica carinata HOM05D004255 ORTHO05D004815 1.5e-12 79.0 148 33.8
CDE02G3824 Ceratophyllum demersum HOM05D004255 ORTHO05D004815 3.3e-12 77.8 128 35.9
Peaxi162Scf00450g00074 Petunia axillaris HOM05D004255 ORTHO05D004815 3.3e-12 77.8 53 67.9
Aa31LG5G8100 Aethionema arabicum HOM05D004255 ORTHO05D004815 4.3e-12 77.4 150 30.0
AUR62041993 Chenopodium quinoa HOM05D004255 ORTHO05D004815 4.3e-12 77.4 92 40.2
AUR62022768 Chenopodium quinoa HOM05D004255 ORTHO05D004815 5.6e-12 77.0 129 30.2
Gohir.A05G106000 Gossypium hirsutum HOM05D004255 ORTHO05D004815 9.5e-12 76.3 110 36.4
RcHm_v2.0_Chr3g0470041 Rosa chinensis HOM05D004255 ORTHO05D004815 1.2e-11 75.9 97 41.2
Sp4g10830 Schrenkiella parvula HOM05D004255 ORTHO05D004815 1.2e-11 75.9 146 31.5
Carub.0004s1396 Capsella rubella HOM05D004255 ORTHO05D004815 2.1e-11 75.1 108 37.0
Gorai.009G110100 Gossypium raimondii HOM05D004255 ORTHO05D004815 2.1e-11 75.1 108 36.1
Glyma.20G081700 Glycine max HOM05D004255 ORTHO05D004815 3.6e-11 74.3 152 35.5
ClCG10G020210 Citrullus lanatus HOM05D004255 ORTHO05D004815 8.0e-11 73.2 108 34.3
Cpa.g.sc65.27 Carica papaya HOM05D004255 ORTHO05D004815 1.4e-10 72.4 97 37.1
Potri.003G008900 Populus trichocarpa HOM05D004255 ORTHO05D004815 1.4e-10 72.4 94 40.4
Sabra03G0004500 Salix brachista HOM05D004255 ORTHO05D004815 1.4e-10 72.4 141 34.0
AT2G32630 Arabidopsis thaliana HOM05D004255 ORTHO05D004815 2.3e-10 71.6 104 36.5
EL10Ac7g16556 Beta vulgaris HOM05D004255 ORTHO05D004815 2.3e-10 71.6 102 31.4
COL.COLO4_18281 Corchorus olitorius HOM05D004255 ORTHO05D004815 2.3e-10 71.6 102 36.3
MBI19_g30280_MAGBIO Magnolia biondii HOM05D004255 ORTHO05D004815 3.1e-10 71.2 115 33.0
Thecc.05G064100 Theobroma cacao HOM05D004255 ORTHO05D004815 8.9e-10 69.7 99 37.4
Lj2P116T30 Lonicera japonica HOM05D004255 ORTHO05D004815 1.5e-09 68.9 56 58.9
AL4G28030 Arabidopsis lyrata HOM05D004255 ORTHO05D004815 2.0e-09 68.6 96 38.5
Lj1A198G34 Lonicera japonica HOM05D004255 ORTHO05D004815 2.0e-09 68.6 92 32.6
Oeu034113.1 Olea europaea HOM05D004255 ORTHO05D004815 2.0e-09 68.6 108 30.6
PGR102G0358 Punica granatum HOM05D004255 ORTHO05D004815 5.8e-09 67.0 103 36.9
Thhalv10017786m.g Eutrema salsugineum HOM05D004255 ORTHO05D004815 7.5e-09 66.6 100 34.0
Sed0023037 Sechium edule HOM05D004255 ORTHO05D004815 7.5e-09 66.6 98 35.7
Sp4g14950 Schrenkiella parvula HOM05D004255 ORTHO05D004815 9.8e-09 66.2 100 36.0
Aqoxy1G01172 Aquilegia oxysepala HOM05D004255 ORTHO05D004815 2.9e-08 64.7 95 34.7
SHI12481 Sapria himalayana HOM05D004255 ORTHO05D004815 2.9e-08 64.7 92 33.7
ClCG02G021360 Citrullus lanatus HOM05D004255 ORTHO05D004815 3.7e-08 64.3 149 30.2
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 3.7e-08 64.3 134 28.4
FAN02G2222 Fragaria x ananassa HOM05D004255 ORTHO05D004815 6.4e-08 63.5 81 42.0
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 6.4e-08 63.5 148 25.0
PSO339G5596 Papaver somniferum HOM05D004255 ORTHO05D004815 8.3e-08 63.2 149 29.5
Haze_23917 Corylus avellana HOM05D004255 ORTHO05D004815 1.1e-07 62.8 108 33.3
MD03G1124300 Malus domestica HOM05D004255 ORTHO05D004815 1.1e-07 62.8 106 32.1
Solyc06g010275.1 Solanum lycopersicum HOM05D004255 ORTHO05D004815 1.9e-07 62.0 105 31.4
Sopen06g005230 Solanum pennellii HOM05D004255 ORTHO05D004815 1.9e-07 62.0 105 31.4
THA.LOC104816036 Tarenaya hassleriana HOM05D004255 ORTHO05D004815 3.2e-07 61.2 100 33.0
CANSAT80G1593 Cannabis sativa HOM05D004255 ORTHO05D004815 4.1e-07 60.8 93 32.3
Atru.chr6.3410 Acer truncatum HOM05D000074 ORTHO05D008782 5.4e-07 60.5 149 26.2
CARHR126490 Cardamine hirsuta HOM05D004255 ORTHO05D004815 7.0e-07 60.1 104 30.8
CiPaw.14G077900 Carya illinoinensis HOM05D004255 ORTHO05D004815 7.0e-07 60.1 105 30.5
Ciclev10011347m.g Citrus clementina HOM05D007545 ORTHO05D009579 1.2e-06 59.3 144 27.1
BraA06t23847Z Brassica rapa HOM05D007545 ORTHO05D009579 1.6e-06 58.9 147 25.9
CAN.G1169.10 Capsicum annuum HOM05D023770 ORTHO05D024770 1.6e-06 58.9 39 66.7
FAN16G3598 Fragaria x ananassa HOM05D004255 ORTHO05D004815 1.6e-06 58.9 86 30.2
MD04G1094800 Malus domestica HOM05D004255 ORTHO05D004815 1.6e-06 58.9 71 40.8
QL01p037114 Quercus lobata HOM05D004255 ORTHO05D004815 1.6e-06 58.9 91 37.4
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.6e-06 58.9 134 24.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.6e-06 58.9 153 27.5
A06p06360 Brassica napus HOM05D007545 ORTHO05D009579 2.1e-06 58.5 147 25.9
PSO063G1866 Papaver somniferum HOM05D004255 ORTHO05D004815 2.1e-06 58.5 139 25.9
Psat2g047200 Pisum sativum HOM05D007545 ORTHO05D009579 3.5e-06 57.8 132 27.3
A03p18210 Brassica napus HOM05D004255 ORTHO05D004815 4.6e-06 57.4 101 33.7
Solyc10g084080.3 Solanum lycopersicum HOM05D023770 ORTHO05D024770 4.6e-06 57.4 48 62.5
BcaC01g05901 Brassica carinata HOM05D004255 ORTHO05D004815 6.0e-06 57.0 101 32.7
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 6.0e-06 57.0 141 24.8
ATR0564G055 Amborella trichopoda HOM05D002986 ORTHO05D007611 7.8e-06 56.6 100 36.0
BolC3t14507H Brassica oleracea HOM05D004255 ORTHO05D004815 7.8e-06 56.6 101 32.7
BraA03t11081Z Brassica rapa HOM05D004255 ORTHO05D004815 7.8e-06 56.6 101 32.7
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 7.8e-06 56.6 144 29.2
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 7.8e-06 56.6 148 25.0


User provided reference genes

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