Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 6.6e-55 217.2 118 100.0
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.9e-25 119.4 68 100.0
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 9.3e-25 117.1 68 98.5
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 9.3e-25 117.1 68 98.5
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 8.7e-23 110.5 68 95.6
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.6e-22 107.1 68 92.6
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 1.1e-14 83.6 69 81.2
Peaxi162Scf00165g01210 Petunia axillaris HOM05D002160 ORTHO05D002012 1.9e-14 82.8 46 89.1
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 2.5e-14 82.4 69 78.3
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 5.6e-14 81.3 69 76.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 5.6e-14 81.3 68 73.5
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.4e-14 80.9 68 76.5
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.3e-13 80.1 68 76.5
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.1e-13 79.3 68 75.0
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.8e-13 79.0 68 75.0
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 2.8e-13 79.0 69 79.7
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.8e-13 79.0 67 76.1
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.7e-13 78.6 68 76.5
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 6.2e-13 77.8 66 77.3
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 8.1e-13 77.4 68 69.1
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.1e-12 77.0 68 73.5
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.4e-12 76.6 68 76.5
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.8e-12 76.3 67 71.6
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.8e-12 76.3 67 71.6
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.8e-12 76.3 68 73.5
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.4e-12 75.9 78 52.6
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 2.4e-12 75.9 68 75.0
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 2.4e-12 75.9 69 73.9
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.1e-12 75.5 68 73.5
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 3.1e-12 75.5 68 70.6
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 4.0e-12 75.1 68 73.5
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 5.3e-12 74.7 68 70.6
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 6.9e-12 74.3 68 73.5
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 6.9e-12 74.3 69 73.9
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 9.0e-12 73.9 69 75.4
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 9.0e-12 73.9 68 75.0
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.2e-11 73.6 68 73.5
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-11 73.6 71 62.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.5e-11 73.2 68 73.5
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.5e-11 73.2 70 77.1
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.5e-11 73.2 69 73.9
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.5e-11 73.2 68 72.1
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.0e-11 72.8 57 82.5
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.0e-11 72.8 69 65.2
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 2.0e-11 72.8 57 82.5
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 3.4e-11 72.0 68 66.2
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.4e-11 72.0 68 72.1
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.5e-11 71.6 68 67.6
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 4.5e-11 71.6 68 66.2
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 4.5e-11 71.6 68 72.1
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.5e-11 71.6 69 76.8
Nitab4.5_0002018g0040 Nicotiana tabacum HOM05D002160 ORTHO05D002012 5.8e-11 71.2 66 75.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 7.6e-11 70.9 71 71.8
ClCG10G021120 Citrullus lanatus HOM05D002160 ORTHO05D002012 9.9e-11 70.5 66 69.7
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 9.9e-11 70.5 68 67.6
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 9.9e-11 70.5 68 63.2
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 1.3e-10 70.1 68 70.6
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 1.3e-10 70.1 67 71.6
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.3e-10 70.1 70 68.6
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.2e-10 69.3 69 71.0
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 2.9e-10 68.9 66 72.7
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 2.9e-10 68.9 72 69.4
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 3.8e-10 68.6 67 71.6
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.4e-10 67.8 68 61.8
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 8.4e-10 67.4 68 64.7
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.1e-09 67.0 72 68.1
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.9e-09 66.2 69 66.7
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.9e-09 66.2 69 63.8
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.4e-09 65.9 69 69.6
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.4e-09 65.9 68 64.7
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 3.2e-09 65.5 72 66.7
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 3.2e-09 65.5 51 80.4
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 4.2e-09 65.1 67 68.7
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 5.5e-09 64.7 70 68.6
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 5.5e-09 64.7 70 57.1
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 5.5e-09 64.7 71 52.1
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 5.5e-09 64.7 68 66.2
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 7.1e-09 64.3 69 65.2
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 7.1e-09 64.3 69 68.1
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 7.1e-09 64.3 67 71.6
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 7.1e-09 64.3 65 72.3
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 9.3e-09 63.9 69 55.1
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 9.3e-09 63.9 69 55.1
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 9.3e-09 63.9 71 43.7
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 9.3e-09 63.9 68 61.8
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.2e-08 63.5 69 63.8
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-08 63.5 69 63.8
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 1.6e-08 63.2 69 63.8
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.1e-08 62.8 69 47.8
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 2.1e-08 62.8 70 67.1
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 2.1e-08 62.8 69 65.2
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 2.1e-08 62.8 69 53.6
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 2.1e-08 62.8 69 53.6
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 2.1e-08 62.8 69 65.2
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 2.7e-08 62.4 70 65.7
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.7e-08 62.4 69 71.0
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 2.7e-08 62.4 69 66.7
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 2.7e-08 62.4 69 63.8
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.7e-08 62.4 68 63.2
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 3.5e-08 62.0 69 53.6
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 3.5e-08 62.0 69 53.6
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 3.5e-08 62.0 69 53.6
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 3.5e-08 62.0 69 53.6
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 3.5e-08 62.0 69 53.6
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 4.6e-08 61.6 57 71.9
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.6e-08 61.6 68 66.2
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 6.0e-08 61.2 69 62.3
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 6.0e-08 61.2 69 65.2
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 6.0e-08 61.2 69 62.3
SalBow4G2189 Salvia bowleyana HOM05D002160 ORTHO05D002012 6.0e-08 61.2 50 76.0
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 7.9e-08 60.8 69 63.8
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 7.9e-08 60.8 69 65.2
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 7.9e-08 60.8 69 52.2
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 1.0e-07 60.5 69 53.6
MBI13_g34921_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 1.0e-07 60.5 52 63.5
Os05g0111300 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 1.3e-07 60.1 72 58.3
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 1.3e-07 60.1 68 44.1
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.3e-07 60.1 69 65.2
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.3e-07 60.1 70 60.0
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 1.8e-07 59.7 69 69.6
ECA240G1164 Erigeron canadensis HOM05D002160 ORTHO05D002012 1.8e-07 59.7 68 61.8
Os01g0149800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 3.0e-07 58.9 49 75.5
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.9e-07 58.5 70 60.0
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 5.1e-07 58.2 66 69.7
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 6.7e-07 57.8 68 50.0
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.7e-07 57.4 58 70.7
HanXRQChr03g0070901 Helianthus annuus HOM05D002160 ORTHO05D002012 8.7e-07 57.4 68 66.2
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 1.1e-06 57.0 69 49.3
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-06 57.0 69 49.3
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 1.1e-06 57.0 69 49.3
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 1.1e-06 57.0 69 49.3
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 1.1e-06 57.0 71 62.0
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 1.5e-06 56.6 70 50.0
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.5e-06 56.6 67 49.3
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 2.5e-06 55.8 69 56.5
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 3.3e-06 55.5 69 66.7
HPP92_028586 Vanilla planifolia HOM05D002160 ORTHO05D002012 3.3e-06 55.5 67 61.2
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 4.3e-06 55.1 69 58.0
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 4.3e-06 55.1 79 57.0
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 4.3e-06 55.1 79 57.0
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 4.3e-06 55.1 79 57.0
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 4.3e-06 55.1 79 57.0
MD16G1208900 Malus domestica HOM05D002160 ORTHO05D002012 5.6e-06 54.7 72 45.8
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.6e-06 54.7 68 58.8
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 9.6e-06 53.9 57 68.4


User provided reference genes

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