Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 7.1e-251 870.2 451 100.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.9e-248 862.1 450 99.1
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 6.9e-246 853.6 450 98.7
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 7.9e-242 840.1 450 95.6
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 8.5e-236 820.1 449 94.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-235 818.9 450 92.7
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.2e-235 818.1 450 92.2
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.4e-235 816.6 450 92.2
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 6.1e-234 813.9 450 92.0
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.0e-233 811.6 450 91.8
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 8.8e-233 810.1 457 91.5
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.1e-232 809.7 448 92.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 5.7e-232 807.4 449 92.0
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 1.3e-231 806.2 451 90.7
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.7e-231 805.8 451 90.9
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.7e-231 805.8 451 91.4
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 2.2e-231 805.4 452 90.9
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.2e-231 805.4 448 91.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 6.3e-231 803.9 450 90.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.1e-230 803.1 447 91.7
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 4.1e-230 801.2 448 91.5
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 5.3e-230 800.8 449 89.8
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 5.3e-230 800.8 452 89.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 5.3e-230 800.8 452 89.8
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 9.1e-230 800.0 449 90.0
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 9.1e-230 800.0 450 91.1
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 1.2e-229 799.7 451 89.8
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.2e-229 799.7 452 89.8
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 1.0e-228 796.6 451 90.2
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 1.7e-228 795.8 450 89.3
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 3.8e-228 794.7 451 89.8
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 5.0e-228 794.3 451 90.2
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 6.5e-228 793.9 448 89.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 6.5e-228 793.9 448 90.6
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.5e-228 793.9 451 90.2
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 8.5e-228 793.5 450 90.0
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 1.1e-227 793.1 449 90.0
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.1e-227 793.1 449 90.6
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 2.5e-227 792.0 457 90.2
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 4.2e-227 791.2 449 89.1
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 7.2e-227 790.4 450 88.7
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 7.2e-227 790.4 447 90.4
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 7.2e-227 790.4 450 90.4
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 9.4e-227 790.0 453 89.4
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.1e-226 788.9 448 90.6
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.0e-225 786.6 451 89.6
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.0e-225 786.6 475 86.3
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 1.4e-225 786.2 448 90.6
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 3.9e-225 784.6 451 88.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 3.3e-224 781.6 452 88.1
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.7e-223 778.1 452 88.1
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 1.4e-222 776.2 449 88.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 1.8e-222 775.8 448 88.6
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 3.1e-222 775.0 448 89.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.0e-220 770.0 448 87.5
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.3e-220 769.6 448 87.7
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 2.9e-220 768.5 448 87.9
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.5e-220 767.3 477 83.6
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.5e-219 765.4 448 86.8
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 7.2e-219 763.8 448 86.2
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 9.4e-219 763.5 448 85.9
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.4e-219 763.5 448 85.9
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 2.1e-218 762.3 451 86.3
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 2.1e-218 762.3 450 86.0
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 3.6e-218 761.5 450 85.8
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 3.6e-218 761.5 450 85.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 4.7e-218 761.1 450 87.1
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 8.0e-218 760.4 450 85.8
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.0e-217 760.0 450 85.6
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 1.8e-217 759.2 448 87.9
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 1.8e-217 759.2 448 87.9
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.8e-217 759.2 450 85.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 3.0e-217 758.4 450 85.6
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 5.2e-217 757.7 450 85.3
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 2.0e-216 755.7 450 84.4
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 2.6e-216 755.4 449 87.1
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.3e-215 753.1 450 83.8
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.2e-215 752.3 448 87.1
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.8e-215 751.9 449 85.1
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 3.7e-215 751.5 446 84.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 6.3e-215 750.7 452 87.2
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 8.2e-215 750.4 449 84.9
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 1.4e-214 749.6 450 83.3
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 7.0e-214 747.3 449 84.9
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 7.0e-214 747.3 449 84.9
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 7.0e-214 747.3 449 84.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.5e-213 745.0 447 84.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.0e-212 743.4 448 84.2
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.0e-212 743.4 449 83.5
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.3e-212 743.0 440 85.5
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 1.7e-212 742.7 448 84.6
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.8e-212 741.5 395 96.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.1e-211 740.0 452 86.7
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.5e-211 738.8 452 86.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 5.2e-209 731.1 455 86.2
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.4e-206 723.0 450 81.8
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.9e-204 715.3 449 84.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-203 711.1 449 80.4
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.5e-203 711.1 449 80.4
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 5.5e-203 711.1 450 83.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.1e-202 709.1 455 83.1
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.4e-198 694.5 447 78.5
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.9e-197 691.0 471 78.8
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.9e-196 688.7 431 80.7
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.9e-195 686.0 471 78.8
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 2.3e-193 679.1 450 78.9
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.3e-193 679.1 402 85.8
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 8.9e-193 677.2 392 87.2
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 3.4e-192 675.2 395 90.1
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.7e-183 645.2 477 73.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.0e-180 637.1 450 75.3
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-178 629.0 467 73.2
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 8.6e-172 607.4 447 73.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.4e-160 568.5 473 68.7
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.9e-159 565.1 395 76.7
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.4e-158 561.6 319 91.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 8.4e-151 537.7 453 61.4
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.2e-149 533.9 449 65.9
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.1e-140 501.9 319 81.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.3e-130 470.7 426 54.7
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.2e-128 464.2 275 87.3
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 6.5e-127 458.4 376 61.7
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 8.5e-127 458.0 448 59.6
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.2e-126 454.9 306 80.4
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.6e-125 452.6 428 53.7
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.2e-122 443.4 428 52.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.1e-115 421.0 427 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.8e-111 406.0 424 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.4e-110 401.4 399 53.9
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-109 400.2 428 50.5
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.9e-108 396.0 245 81.6
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.5e-102 375.6 414 49.0
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 4.4e-91 339.3 236 75.0
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.0e-79 299.3 225 76.0
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-74 284.3 224 67.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.1e-57 226.5 125 86.4
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-56 224.2 171 72.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.9e-32 142.5 78 88.5
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.9e-26 124.0 101 62.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 3.2e-25 120.6 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.3e-23 114.4 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 8.7e-23 112.5 92 59.8
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.3e-18 98.6 56 87.5
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.6e-16 91.7 57 73.7
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.7e-16 90.9 56 76.8
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 1.5e-06 58.5 30 73.3


User provided reference genes

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