Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.6e-113 412.1 221 100.0
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 7.4e-108 394.0 221 96.8
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.3e-106 387.9 221 95.0
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 4.2e-95 351.7 224 86.2
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.3e-85 320.1 221 79.6
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 7.4e-84 314.3 221 79.6
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 8.2e-83 310.8 221 79.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.5e-73 278.5 218 74.3
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 3.8e-72 275.4 224 70.1
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.6e-70 270.0 203 76.8
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.2e-61 238.4 219 60.3
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.4e-58 230.3 223 61.4
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.8e-58 229.9 167 70.1
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.1e-55 220.7 165 66.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 4.2e-55 218.8 161 71.4
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.7e-54 215.3 201 58.7
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.0e-53 214.2 155 69.0
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.4e-53 213.8 180 60.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.4e-52 208.8 160 65.0
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.7e-51 206.8 225 55.1
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 2.2e-51 206.5 164 66.5
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.7e-51 205.7 175 61.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.1e-50 204.1 156 66.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-50 204.1 156 66.0
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.8e-50 203.4 218 54.1
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.4e-50 203.0 174 62.1
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 7.0e-50 201.4 159 65.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 7.0e-50 201.4 176 61.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 7.0e-50 201.4 160 65.0
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 7.0e-50 201.4 163 63.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 9.1e-50 201.1 222 52.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 2.0e-49 199.9 227 53.3
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.7e-49 199.5 242 49.2
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 4.5e-49 198.7 165 62.4
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 4.5e-49 198.7 216 55.1
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 7.7e-49 198.0 159 64.2
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.7e-48 196.8 159 63.5
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.1e-47 194.1 162 62.3
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.1e-47 194.1 148 67.6
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.5e-47 193.0 182 54.9
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 9.5e-47 191.0 157 60.5
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.7e-46 189.5 223 49.3
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 3.0e-45 186.0 161 59.0
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 8.8e-45 184.5 146 63.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.4e-44 182.2 173 56.1
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.8e-43 179.5 176 55.1
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 6.3e-43 178.3 216 46.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.1e-42 175.6 161 60.2
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.4e-42 175.3 155 60.6
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 9.2e-42 174.5 172 54.1
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.6e-41 173.7 165 55.8
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.7e-40 170.2 163 53.4
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 3.3e-39 166.0 157 53.5
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 9.5e-39 164.5 138 65.9
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.6e-38 163.7 148 58.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.8e-38 162.9 128 63.3
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 4.7e-38 162.2 162 55.6
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.4e-37 160.6 157 52.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.0e-37 159.1 196 47.4
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.2e-37 158.7 159 56.6
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 3.7e-35 152.5 138 56.5
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 8.3e-35 151.4 192 47.9
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.8e-34 150.2 155 49.0
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.4e-34 149.8 164 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 1.6e-33 147.1 150 54.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.7e-32 143.7 116 64.7
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.3e-32 143.3 153 51.0
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 3.0e-32 142.9 154 51.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 4.3e-31 139.0 115 57.4
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 1.8e-29 133.7 169 47.9
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.2e-29 132.1 104 72.1
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.2e-28 131.0 141 48.2
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.2e-28 131.0 85 75.3
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.6e-28 129.8 120 55.8
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.4e-28 129.4 120 55.8
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 4.4e-28 129.0 174 44.8
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 6.4e-27 125.2 141 46.8
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 1.5e-23 114.0 141 48.2
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 5.6e-23 112.1 166 39.2
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 3.6e-22 109.4 152 40.1
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.4e-21 107.5 152 38.8
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.4e-21 107.5 152 38.8
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.8e-21 107.1 211 32.7
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.8e-21 107.1 171 36.3
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.0e-21 105.9 170 35.3
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.2e-21 105.5 152 38.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 5.2e-21 105.5 168 36.3
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 6.8e-21 105.1 129 38.0
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 6.8e-21 105.1 138 39.1
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 8.9e-21 104.8 171 35.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 8.9e-21 104.8 227 33.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 5.8e-20 102.1 156 39.1
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 9.8e-20 101.3 153 38.6
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 9.8e-20 101.3 153 38.6
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.3e-19 100.9 161 34.2
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.3e-19 100.9 157 39.5
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 1.3e-19 100.9 153 37.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.7e-19 100.5 171 35.1
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.2e-19 100.1 151 37.1
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.7e-19 99.4 120 40.0
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.7e-19 99.4 122 41.8
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 4.9e-19 99.0 117 40.2
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.4e-19 98.6 158 34.2
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 8.3e-19 98.2 124 38.7
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 8.3e-19 98.2 127 38.6
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.1e-18 97.8 156 35.3
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-18 97.8 122 39.3
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.4e-18 97.4 145 43.4
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-18 97.4 124 38.7
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.4e-18 97.4 124 38.7
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.9e-18 97.1 135 39.3
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 3.2e-18 96.3 187 33.2
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.2e-18 96.3 122 36.9
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.2e-18 96.3 196 31.6
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.4e-18 95.5 123 39.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 5.4e-18 95.5 152 34.2
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 5.4e-18 95.5 153 33.3
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 5.4e-18 95.5 135 37.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 7.1e-18 95.1 156 34.6
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 7.1e-18 95.1 215 28.8
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.1e-18 95.1 84 58.3
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 7.1e-18 95.1 153 34.0
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 7.1e-18 95.1 116 46.6
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 9.2e-18 94.7 121 37.2
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.2e-17 94.4 215 32.6
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 1.2e-17 94.4 151 34.4
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.2e-17 94.4 122 36.9
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.6e-17 94.0 162 35.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.1e-17 93.6 167 35.9
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.7e-17 93.2 120 39.2
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.7e-17 93.2 160 36.9
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.7e-17 93.2 129 39.5
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 3.5e-17 92.8 106 39.6
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 4.6e-17 92.4 72 65.3
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 4.6e-17 92.4 72 65.3
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.0e-17 92.0 126 35.7
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 6.0e-17 92.0 209 28.2
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 6.0e-17 92.0 83 54.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.0e-16 91.3 155 31.6
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.0e-16 91.3 148 35.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.3e-16 90.9 122 36.1
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.3e-16 90.9 114 41.2
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.7e-16 90.5 119 36.1
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.3e-16 90.1 207 29.5
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-16 90.1 84 57.1
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 3.0e-16 89.7 137 34.3
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.9e-16 89.4 180 32.8
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 6.6e-16 88.6 187 31.6
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.6e-16 88.6 105 42.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 8.6e-16 88.2 138 41.3
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-15 87.8 83 51.8
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.5e-15 86.7 78 59.0
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 5.6e-15 85.5 189 31.2
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 7.3e-15 85.1 130 33.8
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.8e-14 83.2 181 30.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.8e-13 80.5 91 42.9
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.3e-13 80.1 124 34.7
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.3e-13 80.1 124 34.7
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 4.4e-12 75.9 170 30.0
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.6e-12 75.1 120 35.8
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-11 73.9 193 27.5
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.4e-10 68.9 151 31.1
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 7.1e-10 68.6 214 24.8
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.9e-08 62.8 73 41.1
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 8.6e-08 61.6 105 32.4
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.6e-07 58.9 74 36.5


User provided reference genes

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