Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 1.1e-245 852.8 423 100.0
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 6.1e-236 820.5 419 96.7
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 5.2e-235 817.4 419 96.7
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 1.4e-219 766.1 423 89.4
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 1.6e-191 672.9 401 83.5
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 3.2e-176 622.1 413 77.5
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 3.9e-150 535.4 376 72.6
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.2e-130 470.7 438 55.0
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 1.5e-130 470.3 429 56.9
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.0e-125 453.4 448 52.9
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 1.4e-123 447.2 427 52.9
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 2.4e-123 446.4 409 55.0
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 3.1e-123 446.0 428 54.4
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 3.1e-123 446.0 416 54.8
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 1.2e-122 444.1 415 53.7
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 2.2e-121 439.9 436 53.0
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 2.9e-121 439.5 423 55.1
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 8.0e-119 431.4 410 53.4
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 8.0e-119 431.4 421 54.4
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 8.0e-119 431.4 420 54.5
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.5e-117 427.2 410 52.9
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 5.7e-117 425.2 411 54.0
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 4.8e-116 422.2 399 53.1
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 1.8e-115 420.2 409 51.8
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 2.4e-115 419.9 433 50.8
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.0e-115 418.3 410 52.9
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 4.5e-114 415.6 417 53.2
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.5e-114 415.6 416 53.4
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 5.9e-114 415.2 414 52.9
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 5.9e-114 415.2 416 53.4
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 3.8e-113 412.5 426 51.6
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 9.4e-112 407.9 395 53.2
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.8e-110 403.7 416 51.0
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 3.0e-110 402.9 412 52.9
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 8.8e-110 401.4 412 52.7
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 1.5e-109 400.6 416 51.7
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 2.0e-109 400.2 418 50.5
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 4.4e-109 399.1 425 49.9
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 7.5e-109 398.3 394 55.1
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 1.3e-108 397.5 414 50.5
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.4e-107 394.0 414 51.4
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.4e-107 394.0 414 51.4
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 3.1e-107 392.9 433 49.9
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 4.1e-107 392.5 424 50.0
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 7.0e-107 391.7 428 50.2
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 9.1e-107 391.3 414 51.2
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 1.2e-106 391.0 406 51.5
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 4.5e-106 389.0 379 53.8
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 4.5e-106 389.0 418 51.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.3e-105 387.5 409 50.9
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.2e-105 386.7 400 51.5
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 8.5e-105 384.8 415 48.4
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 8.5e-105 384.8 415 48.4
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 1.1e-104 384.4 422 49.1
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 3.2e-104 382.9 424 48.8
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 3.2e-104 382.9 424 48.8
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 3.2e-104 382.9 423 49.4
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 5.5e-104 382.1 424 49.8
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 1.2e-103 380.9 427 49.4
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 1.6e-103 380.6 438 47.3
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 2.1e-103 380.2 407 51.1
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 6.1e-103 378.6 437 47.4
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.0e-102 377.9 429 48.7
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.4e-102 377.5 416 50.7
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.8e-102 377.1 423 48.7
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.0e-102 376.3 410 49.8
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.0e-102 376.3 410 49.3
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 6.8e-102 375.2 416 48.1
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.2e-101 374.4 410 49.3
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 3.4e-101 372.9 424 47.9
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 2.2e-100 370.2 514 42.4
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.1e-99 367.9 429 48.7
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 2.4e-99 366.7 432 49.1
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 4.1e-99 365.9 439 47.6
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 7.0e-99 365.2 426 47.7
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 1.2e-98 364.4 397 48.1
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 2.0e-98 363.6 411 49.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 3.5e-98 362.8 405 50.1
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 2.3e-97 360.1 356 51.1
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.5e-96 357.5 305 62.0
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 1.5e-96 357.5 391 50.6
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 1.5e-96 357.5 387 49.4
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 3.3e-96 356.3 455 42.6
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 3.3e-96 356.3 359 53.8
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 9.5e-96 354.8 451 45.2
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 2.3e-94 350.1 428 45.1
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 8.9e-94 348.2 423 45.9
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 3.4e-93 346.3 381 50.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.1e-91 339.3 410 46.6
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 9.2e-91 338.2 389 49.6
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.5e-88 330.9 373 49.1
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.5e-88 330.1 412 44.9
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 3.3e-88 329.7 407 45.2
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 8.0e-87 325.1 409 45.0
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 4.4e-85 319.3 290 57.6
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 3.7e-84 316.2 437 41.4
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 4.9e-84 315.8 492 40.4
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 6.4e-84 315.5 437 42.8
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.4e-83 314.3 300 56.0
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.4e-83 314.3 300 53.3
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 7.8e-82 308.5 434 40.8
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 6.8e-78 295.4 412 44.9
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 2.4e-75 287.0 239 59.4
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.0e-73 281.6 248 58.9
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 8.6e-73 278.5 302 47.7
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.8e-71 273.5 415 41.0
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 6.8e-70 268.9 270 52.6
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.6e-66 257.7 250 53.6
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 2.8e-63 246.9 292 45.9
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.8e-58 228.8 407 36.9
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.2e-55 221.5 445 35.7
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 1.9e-51 207.6 426 34.0
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.4e-51 207.2 537 29.8
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 6.6e-49 199.1 521 30.5
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.5e-48 198.0 229 46.7
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.9e-48 197.6 171 54.4
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 5.6e-48 196.1 215 52.1
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.8e-46 191.0 415 32.8
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.4e-46 190.7 295 40.0
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 5.3e-46 189.5 225 48.0
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 5.3e-46 189.5 225 48.0
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 9.9e-45 185.3 199 52.3
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-39 167.5 299 36.8
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.7e-36 157.9 193 42.5
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 7.1e-35 152.5 181 45.3
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 5.1e-33 146.4 202 45.0
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 4.3e-32 143.3 177 48.6
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 1.1e-30 138.7 144 52.8
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 1.4e-30 138.3 441 29.5
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 5.3e-30 136.3 165 41.8
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 2.0e-29 134.4 261 34.9
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.3e-28 131.7 213 40.4
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 1.1e-27 128.6 131 50.4
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 9.3e-27 125.6 176 44.3
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 4.6e-26 123.2 186 39.8
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-22 111.7 159 38.4
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 5.9e-21 106.3 163 37.4
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 3.2e-19 100.5 122 46.7
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.6e-18 96.7 137 36.5
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.0e-16 91.3 164 36.0
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 2.2e-15 87.8 66 60.6
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 2.8e-15 87.4 109 41.3
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.4e-14 85.1 108 41.7
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.2e-13 82.0 88 50.0
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 5.9e-13 79.7 161 32.3
Oeu012237.1 Olea europaea HOM05D004964 ORTHO05D005918 7.7e-13 79.3 111 35.1
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 4.7e-10 70.1 110 40.0
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 7.9e-10 69.3 104 38.5
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 8.8e-09 65.9 69 47.8
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 9.7e-08 62.4 72 47.2
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.0e-06 56.2 203 23.6


User provided reference genes

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