Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-120 435.3 260 100.0
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.3e-97 358.2 191 94.8
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.2e-96 357.1 191 94.8
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 6.4e-95 351.3 191 93.7
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 6.4e-87 324.7 191 88.0
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.1e-86 323.9 189 87.8
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.7e-84 314.3 190 83.2
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 9.3e-70 267.7 170 80.6
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.0e-64 250.0 191 71.2
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.0e-64 250.0 191 69.1
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.0e-64 250.0 192 67.7
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 3.2e-54 216.1 192 60.4
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.2e-50 203.4 173 62.4
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.2e-48 197.6 170 58.8
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 3.5e-48 196.1 158 63.3
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 4.5e-48 195.7 172 57.6
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.0e-47 194.5 174 60.3
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.3e-47 194.1 186 57.5
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 2.5e-46 189.9 116 81.0
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.2e-46 189.5 173 58.4
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.1e-45 186.8 172 58.7
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 4.7e-45 185.7 180 53.3
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 6.1e-45 185.3 197 51.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 8.0e-45 184.9 175 57.7
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.8e-44 183.7 184 55.4
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.3e-44 183.3 182 54.4
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 3.0e-44 183.0 190 52.6
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 6.7e-44 181.8 182 54.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 8.8e-44 181.4 175 57.1
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.2e-43 181.0 159 59.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.0e-43 180.3 197 50.3
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 2.6e-43 179.9 156 60.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 3.3e-43 179.5 180 51.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.7e-43 178.7 90 98.9
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 9.7e-43 177.9 179 52.0
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.3e-42 177.6 169 53.8
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.3e-42 177.6 173 57.2
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.3e-42 177.6 173 57.2
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.3e-42 177.6 184 51.6
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 1.7e-42 177.2 159 57.2
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.7e-42 177.2 184 50.0
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.2e-42 176.8 189 48.7
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.2e-42 176.8 155 56.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 8.2e-42 174.9 181 51.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.1e-41 174.5 186 52.7
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.4e-41 174.1 177 52.0
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.4e-41 173.3 155 54.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 5.3e-41 172.2 181 51.4
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 5.3e-41 172.2 190 51.1
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 5.3e-41 172.2 197 46.7
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 9.1e-41 171.4 169 51.5
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.2e-40 171.0 169 55.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.0e-40 170.2 195 50.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.0e-40 170.2 159 54.7
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.5e-40 169.5 158 57.6
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 3.5e-40 169.5 178 51.1
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 3.5e-40 169.5 171 53.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 4.5e-40 169.1 175 52.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.0e-39 167.9 178 48.9
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.3e-39 167.5 161 50.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.7e-39 167.2 174 51.1
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.2e-39 166.8 161 50.9
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.8e-39 166.0 171 51.5
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 8.5e-39 164.9 161 54.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.1e-38 164.5 161 50.3
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.1e-38 164.5 174 52.3
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.5e-38 164.1 194 48.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 9.4e-38 161.4 158 53.2
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 9.4e-38 161.4 171 51.5
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 9.4e-38 161.4 170 48.8
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.6e-37 160.6 160 51.9
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 4.7e-37 159.1 187 46.0
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 1.0e-36 157.9 188 49.5
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.4e-36 157.5 172 47.1
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.0e-36 156.4 187 46.5
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 4.0e-36 156.0 140 53.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 6.8e-36 155.2 158 51.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 6.8e-36 155.2 189 46.6
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 8.8e-36 154.8 196 48.0
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.2e-35 154.5 188 45.2
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.5e-35 154.1 160 51.2
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.5e-35 154.1 162 50.0
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 2.0e-35 153.7 200 43.5
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 2.0e-35 153.7 170 48.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.6e-35 153.3 161 50.3
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.4e-35 152.5 180 47.8
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 5.7e-35 152.1 161 50.3
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.5e-35 151.8 165 47.3
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 9.8e-35 151.4 178 48.9
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.3e-34 151.0 193 46.1
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.7e-34 150.6 174 46.6
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-34 149.8 141 51.8
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 4.8e-34 149.1 161 49.7
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 4.8e-34 149.1 173 49.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 6.3e-34 148.7 189 45.5
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.1e-33 147.9 170 48.2
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-33 147.9 154 50.0
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-33 147.9 154 49.4
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.4e-33 147.5 155 52.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.8e-33 147.1 209 42.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 5.4e-33 145.6 139 51.8
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.4e-33 145.6 139 51.8
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 7.0e-33 145.2 175 44.6
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 7.0e-33 145.2 160 47.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 2.0e-32 143.7 157 47.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 2.7e-32 143.3 141 49.6
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 3.5e-32 142.9 142 47.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.5e-32 142.5 163 47.9
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 5.9e-32 142.1 171 48.5
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.3e-31 141.0 184 42.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 2.3e-31 140.2 126 55.6
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 5.0e-31 139.0 170 43.5
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 6.5e-31 138.7 169 44.4
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 8.6e-31 138.3 147 49.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.1e-30 137.9 148 50.0
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.1e-30 137.9 148 50.0
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.5e-30 136.7 145 49.0
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 2.5e-30 136.7 142 49.3
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 2.5e-30 136.7 142 49.3
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.3e-30 136.3 165 44.8
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 3.3e-30 136.3 148 48.0
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-29 134.4 198 41.4
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.8e-29 133.3 109 64.2
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 4.7e-29 132.5 156 44.2
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.3e-28 130.2 191 45.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.3e-28 130.2 144 47.9
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.8e-28 128.6 140 49.3
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.8e-28 128.6 140 49.3
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.5e-27 127.5 147 46.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 3.4e-27 126.3 157 42.7
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 4.4e-27 125.9 138 45.7
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 7.5e-27 125.2 156 42.9
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 7.5e-27 125.2 166 45.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 9.8e-27 124.8 152 45.4
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.7e-26 122.9 128 49.2
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 2.4e-25 120.2 106 56.6
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.4e-25 120.2 129 54.3
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 4.1e-25 119.4 90 58.9
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 9.2e-25 118.2 141 42.6
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 2.7e-24 116.7 129 43.4
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.3e-23 114.4 176 39.2
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.3e-23 114.4 154 39.6
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-21 106.7 110 48.2
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.7e-21 105.9 133 42.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.4e-20 104.4 128 44.5
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-20 103.6 79 57.0
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-18 97.8 100 51.0
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.2e-18 97.1 100 51.0
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-17 93.6 83 61.4
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 5.4e-17 92.4 124 41.1
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.6e-16 90.9 68 63.2
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 3.5e-16 89.7 90 51.1
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.7e-15 87.4 176 34.7
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.3e-14 82.8 92 45.7
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.6e-14 82.4 113 41.6
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 9.5e-14 81.6 157 40.1
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.0e-11 73.9 55 60.0
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.2e-10 70.5 86 41.9
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.4e-09 67.8 59 49.2
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.2e-08 64.7 121 30.6
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 5.6e-06 55.8 150 31.3


User provided reference genes

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