Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401005708 Solanum tuberosum HOM05D007790 ORTHO05D009880 9.6e-36 152.9 74 100.0
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 4.3e-12 74.3 34 97.1
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 4.3e-12 74.3 34 97.1
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 4.3e-12 74.3 34 97.1
Oeu055894.1 Olea europaea HOM05D007790 ORTHO05D009880 1.8e-10 68.9 35 85.7
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 4.0e-10 67.8 34 85.3
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 6.9e-10 67.0 34 79.4
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 1.2e-09 66.2 34 82.4
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 1.5e-09 65.9 34 85.3
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.0e-08 63.2 34 79.4
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 1.0e-08 63.2 34 79.4
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 1.7e-08 62.4 34 79.4
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 1.7e-08 62.4 32 78.1
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 2.2e-08 62.0 34 76.5
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.9e-08 61.6 32 78.1
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 3.8e-08 61.2 34 76.5
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 4.9e-08 60.8 34 73.5
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 4.9e-08 60.8 34 73.5
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 6.5e-08 60.5 34 70.6
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 8.4e-08 60.1 34 70.6
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.1e-07 59.7 34 70.6
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 1.4e-07 59.3 34 73.5
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 1.4e-07 59.3 32 75.0
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.4e-07 59.3 34 70.6
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 1.9e-07 58.9 32 75.0
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 3.2e-07 58.2 32 75.0
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 3.2e-07 58.2 32 71.9
Glyma.07G167700 Glycine max HOM05D007790 ORTHO05D009880 3.2e-07 58.2 34 70.6
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 3.2e-07 58.2 36 75.0
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 4.2e-07 57.8 32 78.1
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 4.2e-07 57.8 32 71.9
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 4.2e-07 57.8 32 71.9
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 4.2e-07 57.8 32 71.9
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 5.5e-07 57.4 32 75.0
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 5.5e-07 57.4 32 71.9
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 7.1e-07 57.0 34 70.6
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 7.1e-07 57.0 32 75.0
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 7.1e-07 57.0 36 69.4
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 7.1e-07 57.0 32 71.9
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 7.1e-07 57.0 34 67.6
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 1.2e-06 56.2 32 75.0
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 1.2e-06 56.2 34 64.7
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 1.6e-06 55.8 33 69.7
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.6e-06 55.8 34 67.6
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 2.1e-06 55.5 37 59.5
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 2.7e-06 55.1 34 67.6
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 6.0e-06 53.9 34 61.8
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 6.0e-06 53.9 32 68.8
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 6.0e-06 53.9 34 67.6
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 6.0e-06 53.9 35 60.0
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 6.0e-06 53.9 35 60.0
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 6.0e-06 53.9 35 60.0
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 6.0e-06 53.9 35 60.0
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 6.0e-06 53.9 32 68.8
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 6.0e-06 53.9 32 71.9
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 6.0e-06 53.9 32 68.8
Zm00001eb388110 Zea mays HOM05D007790 ORTHO05D009880 6.0e-06 53.9 32 65.6
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 7.9e-06 53.5 35 60.0
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 7.9e-06 53.5 35 60.0
HanXRQChr05g0152891 Helianthus annuus HOM05D007790 ORTHO05D009880 7.9e-06 53.5 34 64.7


User provided reference genes

Program Settings