Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401005707 Solanum tuberosum HOM05D002305 ORTHO05D396521 8.1e-34 146.4 67 100.0
PGSC0003DMG400014257 Solanum tuberosum HOM05D002305 ORTHO05D397920 9.6e-27 122.9 67 83.6
PGSC0003DMG400016067 Solanum tuberosum HOM05D002305 ORTHO05D394596 6.2e-26 120.2 67 80.6
Nitab4.5_0001917g0010 Nicotiana tabacum HOM05D002305 ORTHO05D002528 1.0e-12 76.3 37 91.9
Sopen09g031500 Solanum pennellii HOM05D002305 ORTHO05D002528 1.0e-12 76.3 37 91.9
PGSC0003DMG400006449 Solanum tuberosum HOM05D002305 ORTHO05D002528 1.0e-12 76.3 37 91.9
Nitab4.5_0000090g0280 Nicotiana tabacum HOM05D002305 ORTHO05D002528 1.3e-12 75.9 37 89.2
Solyc09g082650.4 Solanum lycopersicum HOM05D002305 ORTHO05D002528 1.3e-12 75.9 37 91.9
CAN.G1437.6 Capsicum annuum HOM05D002305 ORTHO05D002528 3.0e-12 74.7 37 89.2
Peaxi162Scf00316g00526 Petunia axillaris HOM05D002305 ORTHO05D002528 3.0e-12 74.7 37 89.2
THA.LOC104803049 Tarenaya hassleriana HOM05D002305 ORTHO05D002528 3.9e-12 74.3 41 78.0
Glyma.20G150200 Glycine max HOM05D002305 ORTHO05D002528 6.7e-12 73.6 37 86.5
Potri.008G157500 Populus trichocarpa HOM05D002305 ORTHO05D002528 6.7e-12 73.6 37 86.5
FvH4_4g01140 Fragaria vesca HOM05D002305 ORTHO05D002528 8.7e-12 73.2 37 86.5
FAN12G2438 Fragaria x ananassa HOM05D002305 ORTHO05D002528 8.7e-12 73.2 37 86.5
RcHm_v2.0_Chr4g0387721 Rosa chinensis HOM05D002305 ORTHO05D002528 8.7e-12 73.2 37 86.5
MD13G1199600 Malus domestica HOM05D002305 ORTHO05D002528 1.1e-11 72.8 37 86.5
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.5e-11 72.4 37 86.5
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.9e-11 72.0 37 86.5
Glyma.10G244100 Glycine max HOM05D002305 ORTHO05D002528 1.9e-11 72.0 37 83.8
Phvul.007G061700 Phaseolus vulgaris HOM05D002305 ORTHO05D002528 1.9e-11 72.0 37 83.8
Atru.chr4.2370 Acer truncatum HOM05D002305 ORTHO05D002528 2.5e-11 71.6 37 83.8
Atru.chr4.2394 Acer truncatum HOM05D002305 ORTHO05D002528 2.5e-11 71.6 37 83.8
Cc03_g04270 Coffea canephora HOM05D002305 ORTHO05D002528 2.5e-11 71.6 37 86.5
Prupe.1G021100 Prunus persica HOM05D002305 ORTHO05D002528 2.5e-11 71.6 36 86.1
TWI09G1503 Tripterygium wilfordii HOM05D002305 ORTHO05D002528 2.5e-11 71.6 37 81.1
Aa31LG9G2650 Aethionema arabicum HOM05D002305 ORTHO05D002528 4.3e-11 70.9 37 83.8
arahy.Tifrunner.gnm1.ann1.E9249P Arachis hypogaea HOM05D002305 ORTHO05D002528 4.3e-11 70.9 36 86.1
CANSAT78G0735 Cannabis sativa HOM05D002305 ORTHO05D002528 4.3e-11 70.9 37 81.1
CiPaw.02G121000 Carya illinoinensis HOM05D002305 ORTHO05D002528 4.3e-11 70.9 47 63.8
Ca_10852_v3 Cicer arietinum L. HOM05D002305 ORTHO05D002528 4.3e-11 70.9 37 83.8
TPR.G26087 Trifolium pratense HOM05D002305 ORTHO05D002528 4.3e-11 70.9 37 83.8
Cpa.g.sc44.121 Carica papaya HOM05D002305 ORTHO05D002528 5.6e-11 70.5 37 81.1
CiPaw.01G195500 Carya illinoinensis HOM05D002305 ORTHO05D002528 5.6e-11 70.5 37 78.4
Ciclev10005931m.g Citrus clementina HOM05D002305 ORTHO05D002528 5.6e-11 70.5 37 81.1
Gohir.A02G034200 Gossypium hirsutum HOM05D002305 ORTHO05D002528 5.6e-11 70.5 37 83.8
QL06p001008 Quercus lobata HOM05D002305 ORTHO05D002528 5.6e-11 70.5 36 83.3
VMungo0720G1441 Vigna mungo HOM05D002305 ORTHO05D002528 5.6e-11 70.5 37 81.1
arahy.Tifrunner.gnm1.ann1.4PTH1W Arachis hypogaea HOM05D002305 ORTHO05D002528 7.4e-11 70.1 36 83.3
CSS0008467 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 7.4e-11 70.1 38 81.6
Sabra08G0119900 Salix brachista HOM05D002305 ORTHO05D002528 7.4e-11 70.1 37 81.1
Eucgr.H03413 Eucalyptus grandis HOM05D002305 ORTHO05D002528 9.6e-11 69.7 37 81.1
MD16G1199600 Malus domestica HOM05D002305 ORTHO05D002528 9.6e-11 69.7 37 83.8
SalBow2G3369 Salvia bowleyana HOM05D002305 ORTHO05D002528 9.6e-11 69.7 43 72.1
PGSC0003DMG400036103 Solanum tuberosum HOM05D002305 ORTHO05D002528 9.6e-11 69.7 37 81.1
Ah.13g071780 Amaranthus hybridus HOM05D002305 ORTHO05D002528 1.3e-10 69.3 37 81.1
AUR62038283 Chenopodium quinoa HOM05D002305 ORTHO05D002528 1.3e-10 69.3 36 83.3
DCAR_030685 Daucus carota HOM05D002305 ORTHO05D002528 1.3e-10 69.3 38 76.3
Gohir.D02G041000 Gossypium hirsutum HOM05D002305 ORTHO05D002528 1.3e-10 69.3 37 81.1
Gorai.005G045400 Gossypium raimondii HOM05D002305 ORTHO05D002528 1.3e-10 69.3 37 81.1
Hma1.2p1_0549F.1_g176990 Hydrangea macrophylla HOM05D002305 ORTHO05D002528 1.3e-10 69.3 38 78.9
Lj3A728T53 Lonicera japonica HOM05D002305 ORTHO05D002528 1.3e-10 69.3 37 81.1
PGR004G2750 Punica granatum HOM05D002305 ORTHO05D002528 1.3e-10 69.3 37 78.4
DCAR_002369 Daucus carota HOM05D002305 ORTHO05D002528 1.6e-10 68.9 38 78.9
TAR362G0269 Trochodendron aralioides HOM05D002305 ORTHO05D002528 1.6e-10 68.9 37 81.1
AL7G41280 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 2.1e-10 68.6 37 81.1
CAN.G1437.5 Capsicum annuum HOM05D002305 ORTHO05D002528 2.1e-10 68.6 37 78.4
Manes.03G173300 Manihot esculenta HOM05D002305 ORTHO05D002528 2.1e-10 68.6 37 81.1
Aqoxy2G03462 Aquilegia oxysepala HOM05D002305 ORTHO05D002528 2.8e-10 68.2 37 78.4
AL7G41250 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 2.8e-10 68.2 37 81.1
Carub.0007s2748 Capsella rubella HOM05D002305 ORTHO05D002528 2.8e-10 68.2 37 81.1
CARHR221180 Cardamine hirsuta HOM05D002305 ORTHO05D002528 2.8e-10 68.2 37 81.1
AUR62034683 Chenopodium quinoa HOM05D002305 ORTHO05D002528 2.8e-10 68.2 36 80.6
ECA248G0970 Erigeron canadensis HOM05D002305 ORTHO05D002528 2.8e-10 68.2 37 81.1
Lj5g0003854 Lotus japonicus HOM05D002305 ORTHO05D002528 2.8e-10 68.2 36 83.3
GSVIVG01018040001 Vitis vinifera HOM05D002305 ORTHO05D002528 2.8e-10 68.2 37 78.4
arahy.Tifrunner.gnm1.ann1.25NDHM Arachis hypogaea HOM05D002305 ORTHO05D002528 3.7e-10 67.8 37 75.7
arahy.Tifrunner.gnm1.ann1.5KYB4B Arachis hypogaea HOM05D002305 ORTHO05D002528 3.7e-10 67.8 37 75.7
Carub.0007s2746 Capsella rubella HOM05D002305 ORTHO05D002528 3.7e-10 67.8 37 81.1
Sc25g0004250 Simmondsia chinensis HOM05D002305 ORTHO05D002528 4.8e-10 67.4 37 78.4
TWI73G0730 Tripterygium wilfordii HOM05D002305 ORTHO05D002528 4.8e-10 67.4 41 75.6
AT4G14710 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
BcaNung00345 Brassica carinata HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Duzib151G0376 Durio zibethinus HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Duzib212G0094 Durio zibethinus HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Thhalv10026306m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Lsat_1_v5_gn_1_112921 Lactuca sativa HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Sp7g12810 Schrenkiella parvula HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Thecc.04G238400 Theobroma cacao HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 81.1
TAR633G0825 Trochodendron aralioides HOM05D002305 ORTHO05D002528 6.2e-10 67.0 37 78.4
Thhalv10026305m.g Eutrema salsugineum HOM05D002305 ORTHO05D002528 8.2e-10 66.6 37 78.4
Lj6A645T39 Lonicera japonica HOM05D002305 ORTHO05D002528 8.2e-10 66.6 42 73.8
MSTRG.9950 Avicennia marina HOM05D002305 ORTHO05D002528 1.1e-09 66.2 36 80.6
ClCG05G004880 Citrullus lanatus HOM05D002305 ORTHO05D002528 1.1e-09 66.2 37 75.7
COL.COLO4_21563 Corchorus olitorius HOM05D002305 ORTHO05D002528 1.1e-09 66.2 34 85.3
Eucgr.B01892 Eucalyptus grandis HOM05D002305 ORTHO05D002528 1.1e-09 66.2 36 77.8
Medtr1g102870 Medicago truncatula HOM05D002305 ORTHO05D002528 1.1e-09 66.2 37 78.4
Nn1g02449 Nelumbo nucifera HOM05D002305 ORTHO05D002528 1.1e-09 66.2 37 78.4
Peaxi162Scf00316g00065 Petunia axillaris HOM05D002305 ORTHO05D002528 1.1e-09 66.2 41 73.2
RcHm_v2.0_Chr4g0387711 Rosa chinensis HOM05D002305 ORTHO05D002528 1.1e-09 66.2 53 58.5
BcaC09g50141 Brassica carinata HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 75.7
A01p22970 Brassica napus HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 75.7
C01p28430 Brassica napus HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 75.7
BolC1t02784H Brassica oleracea HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 75.7
BraA01t02210Z Brassica rapa HOM05D002305 ORTHO05D002528 1.4e-09 65.9 37 75.7
MELO3C006502.2 Cucumis melo HOM05D002305 ORTHO05D002528 1.4e-09 65.9 36 77.8
CsaV3_3G012920 Cucumis sativus L. HOM05D002305 ORTHO05D002528 1.4e-09 65.9 36 77.8
Eucgr.B01011 Eucalyptus grandis HOM05D002305 ORTHO05D002528 1.4e-09 65.9 36 75.0
vmacro08369 Vaccinium macrocarpon HOM05D002305 ORTHO05D002528 1.4e-09 65.9 38 73.7
ECA248G3333 Erigeron canadensis HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 78.4
PSO832G4296 Papaver somniferum HOM05D002305 ORTHO05D002528 1.8e-09 65.5 36 75.0
Rhsim04G0197400 Rhododendron simsii HOM05D002305 ORTHO05D002528 1.8e-09 65.5 37 78.4
Actinidia04512 Actinidia chinensis HOM05D002305 ORTHO05D002528 2.4e-09 65.1 37 78.4
Eucgr.B01017 Eucalyptus grandis HOM05D002305 ORTHO05D002528 3.1e-09 64.7 36 77.8
AL4G19080 Arabidopsis lyrata HOM05D002305 ORTHO05D002528 4.0e-09 64.3 37 73.0
EL10Ac3g06508 Beta vulgaris HOM05D002305 ORTHO05D002528 4.0e-09 64.3 36 77.8
TAR369G0616 Trochodendron aralioides HOM05D002305 ORTHO05D002528 5.3e-09 63.9 37 73.0
Zm00001eb004660 Zea mays HOM05D002305 ORTHO05D002528 5.3e-09 63.9 35 74.3
CSS0041645 Camellia sinensis var. sinensis HOM05D002305 ORTHO05D002528 6.9e-09 63.5 37 75.7
Migut.G00382 Erythranthe guttata HOM05D002305 ORTHO05D002528 6.9e-09 63.5 36 75.0
Sopen09g031490 Solanum pennellii HOM05D002305 ORTHO05D002528 6.9e-09 63.5 37 73.0
unitig_748.g8328 Utricularia gibba HOM05D002305 ORTHO05D002528 6.9e-09 63.5 36 75.0
HPP92_020350 Vanilla planifolia HOM05D002305 ORTHO05D002528 6.9e-09 63.5 35 71.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 9.0e-09 63.2 36 75.0
SGA_v2.0_scaffold191G40429 Striga asiatica HOM05D002305 ORTHO05D002528 9.0e-09 63.2 36 75.0
AUR62003294 Chenopodium quinoa HOM05D002305 ORTHO05D002528 1.2e-08 62.8 36 77.8
Os03g0161800 Oryza sativa ssp. japonica HOM05D002305 ORTHO05D002528 1.2e-08 62.8 37 70.3
Sed0009282 Sechium edule HOM05D002305 ORTHO05D002528 1.2e-08 62.8 36 72.2
Sed0000250 Sechium edule HOM05D002305 ORTHO05D002528 2.0e-08 62.0 36 69.4
Solyc09g082640.1 Solanum lycopersicum HOM05D002305 ORTHO05D002528 2.0e-08 62.0 36 72.2
AT2G26400 Arabidopsis thaliana HOM05D002305 ORTHO05D002528 2.6e-08 61.6 37 70.3
MSTRG.21876 Avicennia marina HOM05D002305 ORTHO05D002528 3.4e-08 61.2 39 69.2
Os10g0419400 Oryza sativa ssp. japonica HOM05D002305 ORTHO05D002528 3.4e-08 61.2 36 69.4
PSO384G0839 Papaver somniferum HOM05D002305 ORTHO05D002528 3.4e-08 61.2 36 72.2
PSO443G0051 Papaver somniferum HOM05D002305 ORTHO05D002528 3.4e-08 61.2 36 72.2
CDE02G4119 Ceratophyllum demersum HOM05D002305 ORTHO05D002528 5.8e-08 60.5 37 70.3
Carub.0003s3288 Capsella rubella HOM05D002305 ORTHO05D002528 6.5e-07 57.0 36 75.0
CARHR183550 Cardamine hirsuta HOM05D002305 ORTHO05D002528 1.1e-06 56.2 34 67.6
ATR0665G588 Amborella trichopoda HOM05D002305 ORTHO05D002528 1.4e-06 55.8 34 70.6
Rhsim04G0197500 Rhododendron simsii HOM05D002305 ORTHO05D002528 3.2e-06 54.7 31 74.2
Aa31LG5G3440 Aethionema arabicum HOM05D002305 ORTHO05D002528 4.2e-06 54.3 32 65.6
Cpa.g.sc44.120 Carica papaya HOM05D002305 ORTHO05D002528 4.2e-06 54.3 31 74.2
Nitab4.5_0001667g0020 Nicotiana tabacum HOM05D002305 ORTHO05D002528 4.2e-06 54.3 40 70.0
Aqoxy2G03461 Aquilegia oxysepala HOM05D002305 ORTHO05D002528 5.5e-06 53.9 45 57.8
ClCG06G006500 Citrullus lanatus HOM05D002305 ORTHO05D002528 5.5e-06 53.9 31 71.0
BcaC03g16602 Brassica carinata HOM05D002305 ORTHO05D002528 7.1e-06 53.5 31 71.0
C02p44300 Brassica napus HOM05D002305 ORTHO05D002528 7.1e-06 53.5 31 71.0
CsaV3_2G013400 Cucumis sativus L. HOM05D002305 ORTHO05D002528 7.1e-06 53.5 31 71.0
Nn1g02448 Nelumbo nucifera HOM05D002305 ORTHO05D002528 7.1e-06 53.5 31 74.2
Actinidia04513 Actinidia chinensis HOM05D002305 ORTHO05D002528 9.3e-06 53.1 31 71.0
Ah.13g075200 Amaranthus hybridus HOM05D002305 ORTHO05D002528 9.3e-06 53.1 45 57.8
Lalb_Chr01g0020891 Lupinus albus HOM05D002305 ORTHO05D002528 9.3e-06 53.1 26 92.3
THA.LOC104826060 Tarenaya hassleriana HOM05D002305 ORTHO05D002528 9.3e-06 53.1 31 71.0


User provided reference genes

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