Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401003606 Solanum tuberosum HOM05D003144 ORTHO05D003539 4.0e-72 274.6 135 100.0
PGSC0003DMG402003606 Solanum tuberosum HOM05D003144 ORTHO05D003539 3.8e-38 161.8 77 100.0
Solyc02g084970.4 Solanum lycopersicum HOM05D003144 ORTHO05D003539 3.5e-36 155.2 77 96.1
CAN.G358.47 Capsicum annuum HOM05D003144 ORTHO05D003539 2.4e-32 142.5 91 73.6
Sopen02g029640 Solanum pennellii HOM05D003144 ORTHO05D003539 5.2e-32 141.4 77 89.6
Peaxi162Scf00366g00815 Petunia axillaris HOM05D003144 ORTHO05D003539 3.2e-29 132.1 74 78.4
Nitab4.5_0008397g0010 Nicotiana tabacum HOM05D003144 ORTHO05D003539 2.5e-26 122.5 74 68.9
Nitab4.5_0000136g0260 Nicotiana tabacum HOM05D003144 ORTHO05D003539 1.3e-25 120.2 74 70.3
Hma1.2p1_1297F.1_g274090 Hydrangea macrophylla HOM05D003144 ORTHO05D003539 1.6e-25 119.8 74 70.3
CAN.G53.3 Capsicum annuum HOM05D003144 ORTHO05D003539 6.2e-25 117.9 76 67.1
Sopen02g013600 Solanum pennellii HOM05D003144 ORTHO05D003539 5.3e-24 114.8 76 69.7
Solyc02g062580.3 Solanum lycopersicum HOM05D003144 ORTHO05D003539 1.2e-23 113.6 76 68.4
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 1.5e-23 113.2 94 55.3
PGSC0003DMG400015511 Solanum tuberosum HOM05D003144 ORTHO05D003539 2.0e-23 112.8 76 68.4
Peaxi162Scf00008g03417 Petunia axillaris HOM05D003144 ORTHO05D003539 2.6e-23 112.5 74 66.2
Peaxi162Scf00366g00819 Petunia axillaris HOM05D003144 ORTHO05D003539 2.6e-23 112.5 72 72.2
Dinv13496 Davidia involucrata HOM05D003144 ORTHO05D003539 9.9e-23 110.5 72 69.4
Nn1g04916 Nelumbo nucifera HOM05D003144 ORTHO05D003539 3.8e-22 108.6 74 64.9
Solyc02g062570.4 Solanum lycopersicum HOM05D003144 ORTHO05D003539 6.4e-22 107.8 73 65.8
TAR628G0922 Trochodendron aralioides HOM05D003144 ORTHO05D003539 1.4e-21 106.7 74 60.8
RcHm_v2.0_Chr2g0100911 Rosa chinensis HOM05D003144 ORTHO05D003539 3.2e-21 105.5 74 63.5
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 5.4e-21 104.8 70 64.3
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 9.3e-21 104.0 70 64.3
FvH4_1g12790 Fragaria vesca HOM05D003144 ORTHO05D003539 9.3e-21 104.0 74 60.8
MD02G1143500 Malus domestica HOM05D003144 ORTHO05D003539 9.3e-21 104.0 73 64.4
Rhsim08G0119800 Rhododendron simsii HOM05D003144 ORTHO05D003539 2.1e-20 102.8 73 60.3
Sabra07G0018700 Salix brachista HOM05D003144 ORTHO05D003539 2.7e-20 102.4 73 65.8
FAN23G2566 Fragaria x ananassa HOM05D003144 ORTHO05D003539 3.5e-20 102.1 122 45.1
CiPaw.02G020200 Carya illinoinensis HOM05D003144 ORTHO05D003539 4.6e-20 101.7 70 62.9
Nn1g04920 Nelumbo nucifera HOM05D003144 ORTHO05D003539 6.0e-20 101.3 69 68.1
QL06p047123 Quercus lobata HOM05D003144 ORTHO05D003539 6.0e-20 101.3 74 60.8
Lj4A205T21 Lonicera japonica HOM05D003144 ORTHO05D003539 7.9e-20 100.9 72 65.3
TPR.G24118 Trifolium pratense HOM05D003144 ORTHO05D003539 7.9e-20 100.9 74 56.8
Cc07_g09870 Coffea canephora HOM05D003144 ORTHO05D003539 1.0e-19 100.5 84 54.8
Dinv40014 Davidia involucrata HOM05D003144 ORTHO05D003539 1.0e-19 100.5 68 67.6
FAN26G2828 Fragaria x ananassa HOM05D003144 ORTHO05D003539 1.3e-19 100.1 74 58.1
MD15G1256700 Malus domestica HOM05D003144 ORTHO05D003539 1.3e-19 100.1 77 57.1
Sed0003710 Sechium edule HOM05D003144 ORTHO05D003539 1.3e-19 100.1 74 56.8
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 2.3e-19 99.4 74 55.4
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 2.3e-19 99.4 77 59.7
Oeu027432.1 Olea europaea HOM05D003144 ORTHO05D003539 3.0e-19 99.0 82 50.0
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 3.0e-19 99.0 73 61.6
Sopen00g011620 Solanum pennellii HOM05D003144 ORTHO05D003539 3.0e-19 99.0 73 63.0
Sopen02g013590 Solanum pennellii HOM05D003144 ORTHO05D003539 3.0e-19 99.0 73 63.0
FAN19G1139 Fragaria x ananassa HOM05D003144 ORTHO05D003539 8.7e-19 97.4 130 46.2
GSVIVG01018921001 Vitis vinifera HOM05D003144 ORTHO05D003539 8.7e-19 97.4 74 51.4
Eucgr.H03322 Eucalyptus grandis HOM05D003144 ORTHO05D003539 1.5e-18 96.7 74 56.8
Aqoxy6G01164 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 1.9e-18 96.3 85 50.6
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 1.9e-18 96.3 74 54.1
MSTRG.2483 Avicennia marina HOM05D003144 ORTHO05D003539 2.5e-18 95.9 130 42.3
EL10As8g23913 Beta vulgaris HOM05D003144 ORTHO05D003539 2.5e-18 95.9 92 46.7
VMungo1215G0425 Vigna mungo HOM05D003144 ORTHO05D003539 2.5e-18 95.9 74 52.7
PSO675G8035 Papaver somniferum HOM05D003144 ORTHO05D003539 4.3e-18 95.1 73 58.9
Prupe.7G158200 Prunus persica HOM05D003144 ORTHO05D003539 4.3e-18 95.1 74 58.1
Phvul.002G033600 Phaseolus vulgaris HOM05D003144 ORTHO05D003539 7.4e-18 94.4 74 51.4
MELO3C007843.2 Cucumis melo HOM05D003144 ORTHO05D003539 1.3e-17 93.6 70 55.7
CAN.G358.48 Capsicum annuum HOM05D003144 ORTHO05D003539 1.6e-17 93.2 88 59.1
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 2.1e-17 92.8 74 51.4
Migut.H02525 Erythranthe guttata HOM05D003144 ORTHO05D003539 2.8e-17 92.4 81 49.4
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 3.6e-17 92.0 77 54.5
unitig_736.g22638 Utricularia gibba HOM05D003144 ORTHO05D003539 3.6e-17 92.0 74 52.7
CsaV3_6G046460 Cucumis sativus L. HOM05D003144 ORTHO05D003539 6.2e-17 91.3 70 54.3
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 8.1e-17 90.9 68 58.8
ClCG01G019760 Citrullus lanatus HOM05D003144 ORTHO05D003539 1.1e-16 90.5 74 51.4
Glyma.01G171800 Glycine max HOM05D003144 ORTHO05D003539 1.4e-16 90.1 74 50.0
Nitab4.5_0001617g0030 Nicotiana tabacum HOM05D003144 ORTHO05D003539 1.4e-16 90.1 55 72.7
Hund13998 Selenicereus undatus HOM05D003144 ORTHO05D003539 1.4e-16 90.1 74 50.0
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 3.1e-16 89.0 74 51.4
Gohir.D12G063300 Gossypium hirsutum HOM05D003144 ORTHO05D003539 4.0e-16 88.6 74 48.6
Gorai.008G066600 Gossypium raimondii HOM05D003144 ORTHO05D003539 4.0e-16 88.6 74 48.6
Sc03g0003130 Simmondsia chinensis HOM05D003144 ORTHO05D003539 4.0e-16 88.6 74 56.8
Gohir.A12G063500 Gossypium hirsutum HOM05D003144 ORTHO05D003539 5.3e-16 88.2 74 48.6
PSO541G4762 Papaver somniferum HOM05D003144 ORTHO05D003539 5.3e-16 88.2 73 56.2
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 5.3e-16 88.2 70 57.1
Ah.03g141130 Amaranthus hybridus HOM05D003144 ORTHO05D003539 6.9e-16 87.8 70 55.7
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 6.9e-16 87.8 79 49.4
Thecc.01G031300 Theobroma cacao HOM05D003144 ORTHO05D003539 6.9e-16 87.8 74 50.0
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 9.0e-16 87.4 74 51.4
Thecc.01G030700 Theobroma cacao HOM05D003144 ORTHO05D003539 9.0e-16 87.4 74 48.6
COL.COLO4_22036 Corchorus olitorius HOM05D003144 ORTHO05D003539 1.2e-15 87.0 74 51.4
PSO339G2437 Papaver somniferum HOM05D003144 ORTHO05D003539 1.2e-15 87.0 73 54.8
PSO541G6245 Papaver somniferum HOM05D003144 ORTHO05D003539 1.2e-15 87.0 77 53.2
PSO675G6275 Papaver somniferum HOM05D003144 ORTHO05D003539 1.2e-15 87.0 73 54.8
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.5e-15 86.7 94 41.5
Duzib264G0171 Durio zibethinus HOM05D003144 ORTHO05D003539 1.5e-15 86.7 74 48.6
CDE11G1071 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 2.0e-15 86.3 83 50.6
Ciclev10026261m.g Citrus clementina HOM05D003144 ORTHO05D003539 2.0e-15 86.3 74 50.0
Atru.chr3.630 Acer truncatum HOM05D003144 ORTHO05D003539 2.6e-15 85.9 74 51.4
HPP92_013478 Vanilla planifolia HOM05D003144 ORTHO05D003539 3.4e-15 85.5 74 51.4
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 5.8e-15 84.7 74 45.9
Lj4g0005388 Lotus japonicus HOM05D003144 ORTHO05D003539 7.6e-15 84.3 71 49.3
Sed0014839 Sechium edule HOM05D003144 ORTHO05D003539 7.6e-15 84.3 69 53.6
AUR62007599 Chenopodium quinoa HOM05D003144 ORTHO05D003539 9.9e-15 84.0 75 54.7
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 1.3e-14 83.6 71 49.3
CiPaw.01G044800 Carya illinoinensis HOM05D003144 ORTHO05D003539 2.2e-14 82.8 63 63.5
CiPaw.01G045400 Carya illinoinensis HOM05D003144 ORTHO05D003539 2.2e-14 82.8 63 63.5
CiPaw.01G045600 Carya illinoinensis HOM05D003144 ORTHO05D003539 2.9e-14 82.4 63 65.1
HanXRQChr16g0530671 Helianthus annuus HOM05D003144 ORTHO05D003539 2.9e-14 82.4 71 52.1
TWI09G1569 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 3.8e-14 82.0 71 49.3
arahy.Tifrunner.gnm1.ann1.U5PEZY Arachis hypogaea HOM05D003144 ORTHO05D003539 6.4e-14 81.3 74 45.9
CAN.G53.4 Capsicum annuum HOM05D003144 ORTHO05D003539 6.4e-14 81.3 73 52.1
CiPaw.01G045100 Carya illinoinensis HOM05D003144 ORTHO05D003539 8.4e-14 80.9 63 63.5
SalBow1G1785 Salvia bowleyana HOM05D003144 ORTHO05D003539 8.4e-14 80.9 77 45.5
SalBow1G2527 Salvia bowleyana HOM05D003144 ORTHO05D003539 8.4e-14 80.9 77 45.5
Aqoxy1G03997 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 1.1e-13 80.5 84 46.4
SalBow1G1618 Salvia bowleyana HOM05D003144 ORTHO05D003539 1.1e-13 80.5 73 46.6
SalBow8G4131 Salvia bowleyana HOM05D003144 ORTHO05D003539 1.1e-13 80.5 73 45.2
arahy.Tifrunner.gnm1.ann1.SCCL3I Arachis hypogaea HOM05D003144 ORTHO05D003539 1.4e-13 80.1 74 44.6
DCAR_025959 Daucus carota HOM05D003144 ORTHO05D003539 1.4e-13 80.1 70 48.6
Lalb_Chr09g0322171 Lupinus albus HOM05D003144 ORTHO05D003539 2.4e-13 79.3 74 45.9
Zm00001eb188310 Zea mays HOM05D003144 ORTHO05D003539 3.2e-13 79.0 74 45.9
THA.LOC104819202 Tarenaya hassleriana HOM05D003144 ORTHO05D003539 7.1e-13 77.8 88 43.2
CDE06G2543 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 9.3e-13 77.4 74 47.3
SalBow8G0597 Salvia bowleyana HOM05D003144 ORTHO05D003539 9.3e-13 77.4 73 43.8
Os02g0704500 Oryza sativa ssp. japonica HOM05D003144 ORTHO05D003539 1.2e-12 77.0 124 37.9
Aa31LG1G14970 Aethionema arabicum HOM05D003144 ORTHO05D003539 2.1e-12 76.3 74 45.9
CANSAT01G2043 Cannabis sativa HOM05D003144 ORTHO05D003539 2.7e-12 75.9 59 54.2
SEGI_19312 Sequoiadendron giganteum HOM05D003144 ORTHO05D003539 3.5e-12 75.5 78 43.6
SEGI_25520 Sequoiadendron giganteum HOM05D003144 ORTHO05D003539 3.5e-12 75.5 78 43.6
Thhalv10004725m.g Eutrema salsugineum HOM05D003144 ORTHO05D003539 4.6e-12 75.1 74 45.9
Psat4g094920 Pisum sativum HOM05D003144 ORTHO05D003539 6.0e-12 74.7 67 50.7
Aqoxy1G03996 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 7.9e-12 74.3 73 43.8
BcaC03g18414 Brassica carinata HOM05D003144 ORTHO05D003539 1.3e-11 73.6 74 43.2
BcaC03g18420 Brassica carinata HOM05D003144 ORTHO05D003539 1.3e-11 73.6 74 43.2
C02p64930 Brassica napus HOM05D003144 ORTHO05D003539 1.3e-11 73.6 74 43.2
Sp2g30280 Schrenkiella parvula HOM05D003144 ORTHO05D003539 1.3e-11 73.6 74 44.6
AL8G45090 Arabidopsis lyrata HOM05D003144 ORTHO05D003539 1.8e-11 73.2 74 44.6
Carub.0008s2807 Capsella rubella HOM05D003144 ORTHO05D003539 3.0e-11 72.4 74 43.2
Manes.01G138300 Manihot esculenta HOM05D003144 ORTHO05D003539 3.0e-11 72.4 69 46.4
BcaB07g29666 Brassica carinata HOM05D003144 ORTHO05D003539 3.9e-11 72.0 74 43.2
A09p09990 Brassica napus HOM05D003144 ORTHO05D003539 3.9e-11 72.0 74 45.9
CARHR281300 Cardamine hirsuta HOM05D003144 ORTHO05D003539 3.9e-11 72.0 74 43.2
TPR.G24094 Trifolium pratense HOM05D003144 ORTHO05D003539 5.1e-11 71.6 67 49.3
A07p17510 Brassica napus HOM05D003144 ORTHO05D003539 8.7e-11 70.9 74 41.9
Thhalv10010693m.g Eutrema salsugineum HOM05D003144 ORTHO05D003539 8.7e-11 70.9 72 44.4
BcaC06g34705 Brassica carinata HOM05D003144 ORTHO05D003539 1.1e-10 70.5 73 42.5
BcaB02g10029 Brassica carinata HOM05D003144 ORTHO05D003539 1.5e-10 70.1 73 42.5
C07p25440 Brassica napus HOM05D003144 ORTHO05D003539 1.5e-10 70.1 73 42.5
BcaC04g23127 Brassica carinata HOM05D003144 ORTHO05D003539 3.3e-10 68.9 74 44.6
BcaNung05718 Brassica carinata HOM05D003144 ORTHO05D003539 3.3e-10 68.9 74 43.2
Zm00001eb252000 Zea mays HOM05D003144 ORTHO05D003539 3.3e-10 68.9 74 43.2
A02p44530 Brassica napus HOM05D003144 ORTHO05D003539 4.3e-10 68.6 73 42.5
C09p11850 Brassica napus HOM05D003144 ORTHO05D003539 1.3e-09 67.0 74 43.2
AL5G31280 Arabidopsis lyrata HOM05D003144 ORTHO05D003539 2.8e-09 65.9 92 40.2
Aa31LG4G19020 Aethionema arabicum HOM05D003144 ORTHO05D003539 4.8e-09 65.1 73 42.5
Carub.0005s1731 Capsella rubella HOM05D003144 ORTHO05D003539 4.8e-09 65.1 92 40.2
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 4.8e-09 65.1 67 43.3
A03p48030 Brassica napus HOM05D003144 ORTHO05D003539 8.2e-09 64.3 73 39.7
BraA03t13911Z Brassica rapa HOM05D003144 ORTHO05D003539 8.2e-09 64.3 73 39.7
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 1.4e-08 63.5 59 54.2
Sp5g11310 Schrenkiella parvula HOM05D003144 ORTHO05D003539 1.4e-08 63.5 92 39.1
THA.LOC104826672 Tarenaya hassleriana HOM05D003144 ORTHO05D003539 1.8e-08 63.2 92 35.9
AT3G50920 Arabidopsis thaliana HOM05D003144 ORTHO05D003539 2.4e-08 62.8 88 40.9
BcaC06g33334 Brassica carinata HOM05D003144 ORTHO05D003539 4.0e-08 62.0 72 40.3
C07p46050 Brassica napus HOM05D003144 ORTHO05D003539 4.0e-08 62.0 72 40.3
CARHR160490 Cardamine hirsuta HOM05D003144 ORTHO05D003539 4.0e-08 62.0 88 38.6
BcaC06g33333 Brassica carinata HOM05D003144 ORTHO05D003539 1.2e-07 60.5 68 39.7
PSO675G7033 Papaver somniferum HOM05D003144 ORTHO05D003539 4.5e-07 58.5 47 57.4
BcaC06g33065 Brassica carinata HOM05D003144 ORTHO05D003539 5.8e-07 58.2 72 38.9
BolC7t45122H Brassica oleracea HOM05D003144 ORTHO05D003539 1.3e-06 57.0 69 40.6
A09p44030 Brassica napus HOM05D003144 ORTHO05D003539 1.7e-06 56.6 79 34.2
BraA09t39861Z Brassica rapa HOM05D003144 ORTHO05D003539 1.7e-06 56.6 79 34.2
C08p26130 Brassica napus HOM05D003144 ORTHO05D003539 2.9e-06 55.8 67 38.8
Medtr8g077120 Medicago truncatula HOM05D003144 ORTHO05D003539 2.9e-06 55.8 46 50.0
RcHm_v2.0_Chr2g0100931 Rosa chinensis HOM05D003144 ORTHO05D003539 2.9e-06 55.8 50 46.0


User provided reference genes

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