Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.3e-121 439.9 249 100.0
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 5.5e-120 434.5 249 98.8
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 4.7e-111 404.8 256 91.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.8e-110 402.9 250 92.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.3e-105 386.7 250 88.8
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.8e-103 379.0 244 88.9
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 5.8e-93 344.7 250 77.2
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 9.8e-93 344.0 202 87.1
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.9e-92 342.4 249 77.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 2.4e-91 339.3 250 76.8
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 5.4e-91 338.2 249 74.3
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 7.0e-91 337.8 251 76.5
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.6e-90 336.7 247 75.3
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-90 336.7 250 76.4
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-90 336.3 251 76.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.5e-90 335.5 250 77.6
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.3e-89 333.6 250 76.4
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.0e-89 332.4 251 77.7
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 5.0e-89 331.6 253 75.5
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 6.6e-89 331.3 250 75.2
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.6e-89 331.3 243 73.7
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.5e-88 330.1 250 75.6
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.5e-88 330.1 259 70.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.9e-88 329.7 251 77.3
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.5e-88 329.3 252 75.4
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.3e-88 328.9 247 75.7
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 4.3e-88 328.6 251 72.5
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 9.5e-88 327.4 250 74.4
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.2e-87 327.0 240 77.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.2e-87 327.0 248 73.4
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.2e-87 327.0 249 74.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.1e-86 323.9 251 75.3
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.3e-86 322.8 251 75.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.3e-86 322.8 252 74.2
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.3e-86 322.8 250 71.6
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.1e-86 322.4 252 72.2
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 8.9e-86 320.9 250 74.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.5e-85 320.1 249 71.5
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.5e-85 320.1 250 74.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.6e-85 319.3 250 72.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 3.4e-85 318.9 249 70.3
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 4.4e-85 318.5 250 72.4
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 4.4e-85 318.5 250 73.6
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 7.5e-85 317.8 253 73.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 7.5e-85 317.8 248 73.0
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 9.9e-85 317.4 249 74.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.3e-84 317.0 246 72.0
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.3e-84 317.0 251 74.1
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 3.7e-84 315.5 248 73.4
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.9e-84 315.1 250 74.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 8.3e-84 314.3 250 70.0
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.1e-83 313.9 248 71.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.1e-83 313.9 248 73.0
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-83 313.9 248 73.8
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.4e-83 313.5 250 73.2
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.4e-83 313.5 248 73.0
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.9e-83 313.2 266 67.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 2.4e-83 312.8 248 72.2
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.4e-83 312.8 247 73.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.2e-83 312.4 247 72.5
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 3.2e-83 312.4 249 71.5
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 3.2e-83 312.4 251 72.5
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.1e-83 311.2 247 71.7
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.6e-82 310.1 238 75.2
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 6.0e-82 308.1 250 70.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 6.0e-82 308.1 250 68.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 7.8e-82 307.8 251 70.5
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.0e-81 307.4 246 74.0
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.0e-81 307.4 241 74.7
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.7e-81 306.6 252 70.2
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-81 306.2 247 70.9
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.0e-81 305.8 249 71.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.9e-81 305.4 246 73.6
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.5e-80 303.5 243 72.4
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 5.6e-80 301.6 251 72.1
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.3e-80 301.2 246 69.9
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 9.5e-80 300.8 238 73.5
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 9.5e-80 300.8 239 72.4
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.6e-79 300.1 252 69.4
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.1e-79 299.7 247 67.6
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.1e-78 297.4 238 71.4
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.1e-78 295.8 252 68.7
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 4.0e-78 295.4 265 66.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 5.2e-78 295.0 246 70.3
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.2e-77 293.9 194 76.3
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.5e-77 293.5 249 69.5
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.0e-77 293.1 248 69.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.6e-77 292.7 238 70.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-77 292.7 248 70.6
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 9.9e-77 290.8 237 70.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 2.2e-76 289.7 248 68.5
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.9e-76 289.3 244 65.6
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.9e-76 289.3 205 72.2
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 2.9e-76 289.3 248 69.4
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.8e-76 288.9 245 68.6
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.1e-75 287.3 346 51.4
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 9.2e-75 284.3 244 67.2
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.1e-74 283.1 245 67.3
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 4.6e-74 282.0 243 67.5
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.0e-73 280.8 293 62.5
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.3e-73 279.6 247 66.4
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.3e-73 279.6 247 64.8
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 7.3e-72 274.6 271 60.5
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 9.0e-70 267.7 252 62.7
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.0e-69 266.5 248 65.3
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.4e-69 265.8 248 65.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.9e-68 262.7 237 59.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.2e-66 257.3 249 63.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.1e-66 256.5 334 50.9
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.3e-65 253.8 249 60.2
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.6e-65 251.5 248 60.5
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 6.6e-65 251.5 240 65.8
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.6e-63 245.7 252 58.7
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.0e-61 240.0 249 58.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.6e-61 239.6 283 50.9
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 5.6e-56 221.9 177 63.3
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.3e-55 220.7 245 57.6
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.8e-55 219.5 247 58.3
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.4e-53 212.6 148 77.0
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.5e-53 212.2 252 53.2
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.2e-52 209.9 242 55.0
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.2e-52 209.9 224 55.8
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.6e-50 203.8 223 52.5
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 3.0e-49 199.5 136 77.2
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 3.1e-46 189.5 168 67.9
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-45 186.8 143 71.3
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.5e-43 178.7 131 71.0
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 7.4e-40 168.3 142 69.7
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.2e-36 156.8 134 63.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.9e-36 156.4 256 42.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-33 147.5 198 54.5
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.3e-33 146.7 160 51.2
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.4e-30 136.7 337 38.9
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 9.1e-30 134.8 230 38.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 4.5e-29 132.5 229 37.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 2.2e-28 130.2 242 37.6
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 4.2e-27 125.9 108 76.9
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 7.2e-27 125.2 91 71.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.7e-25 118.6 104 69.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.8e-22 110.5 71 78.9
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 7.0e-22 108.6 98 60.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-21 106.7 78 70.5
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-19 100.9 60 80.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.0e-12 75.9 76 67.1
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 8.0e-10 68.6 160 34.4
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.8e-07 60.1 38 73.7
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.3e-07 58.9 58 53.4
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 5.3e-06 55.8 183 29.0
AagrBONN_evm.TU.Sc2ySwM_344.2066 Anthoceros agrestis HOM05D003486 ORTHO05D004600 7.0e-06 55.5 123 34.1
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 9.1e-06 55.1 34 70.6


User provided reference genes

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