Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.3e-55 219.5 113 100.0
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.3e-55 219.5 113 100.0
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 5.3e-54 214.2 113 96.5
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 2.6e-53 211.8 113 95.6
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 2.0e-48 195.7 113 88.5
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 9.1e-46 186.8 113 85.0
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 2.5e-43 178.7 112 81.2
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 5.0e-36 154.5 107 75.7
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 8.5e-36 153.7 113 66.4
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 9.5e-35 150.2 113 64.6
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 2.8e-34 148.7 113 67.3
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 4.7e-34 147.9 113 63.7
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 4.7e-34 147.9 113 64.6
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.0e-33 146.7 113 64.6
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 2.3e-33 145.6 113 61.1
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 3.0e-33 145.2 113 62.8
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.0e-33 144.8 113 63.7
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 4.0e-33 144.8 113 62.8
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 6.8e-33 144.1 113 64.6
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 6.8e-33 144.1 113 63.7
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 6.8e-33 144.1 113 61.9
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 8.8e-33 143.7 113 62.8
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 1.2e-32 143.3 113 59.3
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 1.2e-32 143.3 113 61.1
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 2.0e-32 142.5 113 60.2
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.6e-32 142.1 113 60.2
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 2.6e-32 142.1 108 63.0
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 3.4e-32 141.7 113 61.9
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 4.4e-32 141.4 113 61.9
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 7.5e-32 140.6 113 61.9
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 9.8e-32 140.2 113 63.7
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 1.7e-31 139.4 113 60.2
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.7e-31 139.4 108 61.1
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.7e-31 139.4 113 62.8
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 2.2e-31 139.0 113 61.9
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.2e-31 139.0 113 58.4
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 2.8e-31 138.7 113 60.2
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.8e-31 138.7 113 58.4
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 3.7e-31 138.3 113 61.1
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 4.9e-31 137.9 113 61.9
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 6.3e-31 137.5 113 61.1
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 1.1e-30 136.7 113 59.3
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 1.4e-30 136.3 113 60.2
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 1.4e-30 136.3 113 61.1
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 1.4e-30 136.3 110 60.9
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.8e-30 136.0 113 61.1
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.8e-30 136.0 113 60.2
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.4e-30 135.6 113 59.3
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.1e-30 135.2 113 61.1
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 3.1e-30 135.2 113 60.2
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 3.1e-30 135.2 113 59.3
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 4.1e-30 134.8 113 60.2
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 5.4e-30 134.4 113 61.1
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 7.0e-30 134.0 113 59.3
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 9.2e-30 133.7 108 63.0
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 9.2e-30 133.7 111 57.7
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 1.6e-29 132.9 113 60.2
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 2.0e-29 132.5 103 61.2
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 2.0e-29 132.5 108 62.0
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 2.0e-29 132.5 111 58.6
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.0e-29 132.5 113 58.4
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 2.7e-29 132.1 108 61.1
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 2.7e-29 132.1 108 62.0
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 3.5e-29 131.7 108 62.0
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 3.5e-29 131.7 108 61.1
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 3.5e-29 131.7 108 61.1
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 5.9e-29 131.0 104 62.5
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 5.9e-29 131.0 113 59.3
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 5.9e-29 131.0 108 61.1
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 7.8e-29 130.6 113 59.3
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 7.8e-29 130.6 113 61.9
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 1.0e-28 130.2 108 60.2
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 1.0e-28 130.2 108 60.2
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 1.0e-28 130.2 108 60.2
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 1.0e-28 130.2 107 60.7
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 2.3e-28 129.0 107 58.9
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 2.9e-28 128.6 113 57.5
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 2.9e-28 128.6 113 56.6
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 3.8e-28 128.3 113 56.6
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 5.0e-28 127.9 113 56.6
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 5.0e-28 127.9 113 56.6
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 1.1e-27 126.7 113 57.5
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.5e-27 126.3 102 57.8
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 1.9e-27 125.9 107 58.9
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 1.9e-27 125.9 113 53.1
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 3.3e-27 125.2 113 54.9
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 5.6e-27 124.4 113 55.8
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.6e-26 122.9 94 63.8
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 3.6e-26 121.7 113 54.0
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 1.4e-25 119.8 113 51.3
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.8e-25 119.4 99 58.6
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 5.7e-24 114.4 102 52.9
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 4.1e-22 108.2 114 48.2
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 8.6e-20 100.5 98 51.0
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 8.3e-15 84.0 113 46.0
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 1.1e-14 83.6 113 43.4
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 1.4e-14 83.2 86 47.7
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 7.5e-08 60.8 39 74.4


User provided reference genes

Program Settings