Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 4.8e-154 547.7 264 100.0
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 2.9e-151 538.5 264 97.7
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 2.4e-150 535.4 264 97.7
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 1.3e-127 459.9 264 85.2
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 7.2e-126 454.1 249 87.1
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 1.3e-119 433.3 248 83.9
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 2.6e-104 382.5 252 75.4
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 6.8e-92 341.3 233 67.4
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 3.1e-89 332.4 258 63.2
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 5.9e-88 328.2 231 65.8
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.0e-87 325.1 234 66.2
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 7.2e-86 321.2 243 62.6
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 1.4e-84 317.0 239 62.8
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 3.0e-84 315.8 240 64.2
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 3.0e-84 315.8 238 64.7
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 8.8e-84 314.3 243 60.5
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 1.7e-82 310.1 250 60.0
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 5.4e-81 305.1 235 61.7
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 8.6e-79 297.7 241 59.3
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 9.5e-78 294.3 231 60.6
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 9.5e-78 294.3 243 57.6
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 1.2e-77 293.9 232 60.3
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.4e-76 290.4 235 60.0
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 1.8e-76 290.0 224 62.5
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 1.8e-76 290.0 231 60.2
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 2.3e-76 289.7 231 60.6
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.3e-76 289.7 231 61.9
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.7e-74 283.5 271 54.2
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 8.3e-74 281.2 233 60.5
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 1.0e-71 274.2 255 53.7
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 1.3e-71 273.9 242 54.5
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 2.3e-68 263.1 235 57.9
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 3.4e-67 259.2 235 58.7
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 1.3e-66 257.3 239 54.0
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 3.7e-66 255.8 232 55.6
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 1.1e-65 254.2 239 54.0
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 9.2e-65 251.1 232 55.2
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 3.5e-64 249.2 234 55.6
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 8.6e-63 244.6 240 54.2
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 1.5e-62 243.8 232 54.3
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 1.5e-62 243.8 231 54.5
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 1.5e-62 243.8 232 53.4
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 1.9e-62 243.4 241 53.1
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 2.1e-61 240.0 241 51.5
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 3.6e-61 239.2 229 55.9
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 3.6e-61 239.2 235 54.5
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 6.2e-61 238.4 245 51.0
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 1.8e-60 236.9 238 52.5
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 1.2e-59 234.2 236 52.5
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.6e-59 233.0 241 49.8
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.6e-59 233.0 233 52.8
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 9.8e-59 231.1 241 49.0
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 6.4e-58 228.4 237 51.9
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.4e-57 226.5 232 47.8
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 3.2e-57 226.1 235 52.3
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 2.1e-56 223.4 237 51.1
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 2.1e-56 223.4 237 51.1
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 2.7e-56 223.0 237 49.8
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 2.7e-56 223.0 230 52.6
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 3.5e-56 222.6 244 48.8
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 7.8e-56 221.5 236 50.0
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 1.0e-55 221.1 240 50.0
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 3.9e-55 219.2 231 48.5
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 5.1e-55 218.8 230 50.0
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 6.6e-55 218.4 231 48.5
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 1.5e-54 217.2 238 49.2
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 1.5e-54 217.2 237 49.8
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.5e-54 217.2 233 48.5
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 1.5e-54 217.2 227 50.7
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 2.5e-54 216.5 246 49.6
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 4.3e-54 215.7 236 49.2
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 7.3e-54 214.9 243 48.1
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 7.3e-54 214.9 235 47.2
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 3.6e-53 212.6 231 49.4
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 4.7e-53 212.2 231 47.2
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 1.1e-52 211.1 235 49.4
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.4e-52 210.7 230 46.5
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 4.0e-52 209.1 267 43.4
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 3.4e-51 206.1 237 46.4
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 4.4e-51 205.7 238 47.9
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 3.7e-50 202.6 235 45.5
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 3.7e-50 202.6 241 45.2
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 5.1e-47 192.2 289 37.7
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 3.3e-46 189.5 154 56.5
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 3.1e-44 183.0 291 39.5
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.2e-43 181.0 246 42.7
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.6e-43 179.9 138 63.8
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 7.6e-43 178.3 164 51.8
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.8e-42 176.0 138 61.6
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 4.9e-42 175.6 246 42.3
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 8.1e-37 158.3 239 41.0
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 1.2e-35 154.5 238 39.5
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 1.3e-34 151.0 358 29.3
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 3.8e-34 149.4 207 46.4
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 1.9e-33 147.1 96 74.0
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 2.5e-30 136.7 125 54.4
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 3.3e-30 136.3 171 46.2
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 1.6e-29 134.0 99 60.6
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 5.8e-27 125.6 147 43.5
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.9e-23 112.8 138 43.5
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 3.7e-21 106.3 190 35.3
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 1.8e-20 104.0 95 54.7
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 7.4e-14 82.0 127 37.0
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 9.0e-12 75.1 232 25.0
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.0e-11 73.9 256 27.3
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 1.7e-10 70.9 48 68.8
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.9e-09 67.4 275 24.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 6.1e-08 62.4 266 22.9
Cpa.g.sc28.27 Carica papaya HOM05D007273 ORTHO05D009230 7.4e-06 55.5 58 48.3


User provided reference genes

Program Settings