Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 5.4e-221 770.8 412 100.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 5.4e-213 744.2 412 96.4
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 3.0e-211 738.4 412 94.9
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 6.6e-187 657.5 408 85.3
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 9.0e-184 647.1 412 85.4
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 8.4e-174 614.0 408 82.1
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 9.3e-173 610.5 385 84.7
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 5.5e-133 478.4 414 66.7
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 3.0e-131 472.6 411 66.7
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.0e-131 472.2 408 66.4
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 4.0e-131 472.2 408 66.4
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.3e-129 464.9 414 64.3
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 8.3e-129 464.5 407 65.4
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.1e-128 464.2 411 65.2
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 5.4e-128 461.8 405 64.4
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 5.4e-128 461.8 396 65.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-127 460.7 411 64.2
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 2.7e-127 459.5 407 64.4
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.7e-126 456.8 411 65.2
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 6.5e-126 454.9 409 65.0
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 6.5e-126 454.9 411 63.7
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.5e-125 453.8 413 64.4
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.5e-125 453.0 411 63.3
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.2e-125 452.6 411 63.5
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.5e-125 451.8 421 63.4
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 7.2e-125 451.4 409 63.3
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 8.0e-124 448.0 414 62.3
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.3e-123 446.4 415 62.7
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 3.0e-123 446.0 406 61.8
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.2e-123 445.3 439 60.4
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 8.8e-123 444.5 396 64.1
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.6e-122 443.0 414 61.1
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 5.7e-122 441.8 413 62.2
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 5.7e-122 441.8 401 60.6
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 5.7e-122 441.8 407 63.6
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 5.7e-122 441.8 403 63.3
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 4.9e-121 438.7 409 61.4
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 6.3e-121 438.3 400 63.0
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 8.3e-121 438.0 396 62.9
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 3.1e-120 436.0 409 61.1
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 5.4e-120 435.3 405 61.2
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.4e-120 435.3 389 62.7
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.7e-119 433.0 399 61.7
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.3e-118 430.6 413 60.0
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.3e-118 429.9 407 62.4
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.3e-118 429.9 411 60.8
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.9e-118 429.5 395 64.3
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.9e-118 429.5 415 60.2
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 3.8e-118 429.1 326 72.7
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 4.3e-117 425.6 407 59.7
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 5.6e-117 425.2 395 62.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 7.2e-117 424.9 383 61.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.8e-116 422.9 387 62.0
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 6.1e-116 421.8 407 59.7
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 8.0e-116 421.4 359 66.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.0e-115 421.0 408 59.8
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 6.8e-115 418.3 423 60.3
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 1.5e-114 417.2 504 52.0
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.5e-114 417.2 414 58.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 2.0e-114 416.8 395 59.5
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 2.2e-113 413.3 390 61.8
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.2e-113 413.3 407 60.4
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.4e-112 409.8 455 56.9
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 2.4e-112 409.8 422 57.6
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.2e-111 407.5 413 56.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 5.9e-111 405.2 385 58.7
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.0e-110 402.1 386 59.3
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.6e-110 401.4 385 58.4
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.9e-109 400.2 386 59.1
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.8e-108 396.4 332 67.5
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.3e-107 393.3 360 63.1
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 2.3e-107 393.3 410 56.3
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.1e-107 392.9 408 56.1
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 4.0e-107 392.5 405 57.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 9.8e-106 387.9 409 57.2
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.7e-105 387.1 411 56.0
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-105 387.1 395 56.2
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.9e-104 383.6 378 61.1
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.4e-104 383.3 373 63.3
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.0e-102 377.9 384 58.3
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 8.6e-102 374.8 396 55.1
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 2.5e-101 373.2 399 54.4
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 7.3e-101 371.7 403 56.3
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.1e-99 367.9 407 54.3
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 3.1e-99 366.3 416 52.9
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.4e-98 362.8 385 56.9
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 7.5e-98 361.7 417 54.7
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.9e-97 359.8 402 52.5
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.9e-97 359.0 404 52.0
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.4e-96 357.5 400 51.8
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 3.2e-96 356.3 411 51.3
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 3.2e-96 356.3 441 50.1
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 5.4e-96 355.5 400 54.2
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.7e-95 353.2 516 46.3
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 4.6e-95 352.4 400 51.0
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 4.6e-95 352.4 400 50.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 7.8e-95 351.7 400 50.8
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-94 350.1 400 51.0
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.1e-93 347.8 410 50.2
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.6e-90 336.7 402 49.5
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.7e-89 334.0 391 51.4
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 6.0e-87 325.5 400 47.5
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.3e-85 319.3 332 59.0
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 7.3e-85 318.5 418 48.1
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.1e-83 314.7 410 50.0
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 5.1e-78 295.8 340 54.4
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.3e-76 291.2 294 59.2
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 6.9e-75 285.4 366 48.6
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.6e-71 274.2 395 47.3
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.1e-67 260.0 334 50.0
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.2e-65 253.8 308 51.6
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 4.9e-65 252.7 324 47.8
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 2.3e-62 243.8 321 50.5
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 5.1e-62 242.7 350 47.1
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.1e-61 241.5 453 40.2
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.5e-61 240.4 211 65.9
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.4e-56 224.6 247 52.6
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 3.3e-53 213.4 219 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.9e-45 187.6 305 41.6
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 6.3e-36 156.0 152 56.6
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 6.3e-36 156.0 152 56.6
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.0e-30 137.1 342 33.3
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.8e-30 135.6 72 81.9
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 2.9e-25 120.6 98 74.5
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.8e-25 120.2 291 33.3
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 8.0e-23 112.5 144 47.2
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.4e-22 111.7 166 47.0
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.7e-20 103.6 150 46.0
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 6.3e-20 102.8 128 47.7
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.7e-17 94.7 73 76.7
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 6.1e-15 86.3 181 38.1
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.0e-15 85.9 65 67.7
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 4.1e-11 73.6 39 74.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.0e-10 71.2 95 46.3
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 3.2e-08 63.9 58 62.1
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 8.0e-07 59.3 52 71.2
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 1.0e-06 58.9 74 56.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.8e-06 58.2 56 64.3
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 8.8e-06 55.8 56 67.9


User provided reference genes

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