Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400047140 Solanum tuberosum HOM05D011278 ORTHO05D014267 1.0e-87 326.6 158 100.0
PGSC0003DMG400009169 Solanum tuberosum HOM05D011278 ORTHO05D014267 1.8e-36 156.4 89 88.8
PGSC0003DMG400003239 Solanum tuberosum HOM05D011278 ORTHO05D014267 3.3e-33 145.6 80 91.2
PGSC0003DMG400040930 Solanum tuberosum HOM05D011278 ORTHO05D014267 4.4e-30 135.2 80 85.0
PGSC0003DMG400044473 Solanum tuberosum HOM05D011278 ORTHO05D014267 2.2e-29 132.9 80 85.0
PGSC0003DMG400046070 Solanum tuberosum HOM05D011278 ORTHO05D014267 2.5e-25 119.4 80 77.5
PGSC0003DMG400038676 Solanum tuberosum HOM05D011278 ORTHO05D014267 4.7e-24 115.2 81 75.3
PGSC0003DMG400039224 Solanum tuberosum HOM05D011278 ORTHO05D014267 1.8e-23 113.2 79 70.9
PGSC0003DMG400037689 Solanum tuberosum HOM05D000679 ORTHO05D000137 1.6e-19 100.1 145 35.9
PGSC0003DMG400039352 Solanum tuberosum HOM05D000679 ORTHO05D000482 1.7e-18 96.7 78 52.6
Sopen05g015890 Solanum pennellii HOM05D010988 ORTHO05D000137 1.1e-15 87.4 89 40.4
PGSC0003DMG400045823 Solanum tuberosum HOM05D000679 ORTHO05D000137 1.1e-15 87.4 103 42.7
Nitab4.5_0002750g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.6e-14 82.8 80 41.2
Nitab4.5_0002353g0050 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.4e-14 82.0 80 42.5
Nitab4.5_0014780g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 3.7e-13 79.0 86 40.7
Nitab4.5_0005869g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.9e-13 78.6 86 39.5
Nitab4.5_0014318g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.9e-13 78.6 86 40.7
Nitab4.5_0000464g0070 Nicotiana tabacum HOM05D000679 ORTHO05D000482 6.4e-13 78.2 152 32.9
Nitab4.5_0006099g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000482 8.3e-13 77.8 80 41.2
Nitab4.5_0003533g0100 Nicotiana tabacum HOM05D000679 ORTHO05D000482 1.4e-12 77.0 145 33.1
Nitab4.5_0008647g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 1.9e-12 76.6 80 41.2
Nitab4.5_0002151g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000137 3.2e-12 75.9 86 39.5
Nitab4.5_0007686g0020 Nicotiana tabacum HOM05D000679 ORTHO05D000482 3.2e-12 75.9 143 31.5
PGSC0003DMG400046174 Solanum tuberosum HOM05D000679 ORTHO05D000482 3.2e-12 75.9 72 41.7
Nitab4.5_0000983g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 7.1e-12 74.7 80 40.0
Nitab4.5_0014452g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 9.2e-12 74.3 80 41.2
PGSC0003DMG400034712 Solanum tuberosum HOM05D000679 ORTHO05D014686 1.2e-11 73.9 65 46.2
CAN.G1392.3 Capsicum annuum HOM05D001503 ORTHO05D003820 2.7e-11 72.8 63 47.6
Nitab4.5_0001115g0100 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.7e-11 72.8 67 43.3
Nitab4.5_0010113g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.7e-11 72.8 86 38.4
Nitab4.5_0017301g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 3.5e-11 72.4 80 38.8
Sopen09g026450 Solanum pennellii HOM05D000679 ORTHO05D000137 3.5e-11 72.4 85 36.5
Nitab4.5_0013794g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.6e-11 72.0 79 39.2
PGSC0003DMG400043182 Solanum tuberosum HOM05D000679 ORTHO05D000137 6.0e-11 71.6 67 38.8
Nitab4.5_0008941g0050 Nicotiana tabacum HOM05D000679 ORTHO05D000482 7.8e-11 71.2 57 50.9
Sopen11g024470 Solanum pennellii HOM05D000679 ORTHO05D000482 7.8e-11 71.2 80 37.5
Nitab4.5_0022521g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 1.0e-10 70.9 167 28.1
PGSC0003DMG400042934 Solanum tuberosum HOM05D010988 ORTHO05D000034 1.0e-10 70.9 57 47.4
Solyc08g014616.1 Solanum lycopersicum HOM05D000679 ORTHO05D000482 1.3e-10 70.5 66 42.4
PGSC0003DMG400006343 Solanum tuberosum HOM05D000679 ORTHO05D000482 1.3e-10 70.5 65 44.6
Sopen01g053420 Solanum pennellii HOM05D000679 ORTHO05D014266 2.3e-10 69.7 62 43.5
Nitab4.5_0002059g0080 Nicotiana tabacum HOM05D000679 ORTHO05D000482 3.0e-10 69.3 80 40.0
Nitab4.5_0007978g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 3.0e-10 69.3 66 40.9
Nitab4.5_0008559g0010 Nicotiana tabacum HOM05D000679 ORTHO05D000482 3.0e-10 69.3 86 39.5
Sopen10g007210 Solanum pennellii HOM05D000679 ORTHO05D000137 3.0e-10 69.3 62 43.5
Sopen12g022010 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-10 69.3 62 43.5
Solyc06g050740.1 Solanum lycopersicum HOM05D000679 ORTHO05D000482 3.9e-10 68.9 69 39.1
Nitab4.5_0000252g0250 Nicotiana tabacum HOM05D006812 ORTHO05D000482 5.1e-10 68.6 79 38.0
Solyc10g050777.1 Solanum lycopersicum HOM05D009268 ORTHO05D011733 5.1e-10 68.6 76 40.8
Sopen05g009150 Solanum pennellii HOM05D009268 ORTHO05D011733 5.1e-10 68.6 76 40.8
Sopen07g014970 Solanum pennellii HOM05D000679 ORTHO05D000482 5.1e-10 68.6 69 40.6
Solyc03g034207.1 Solanum lycopersicum HOM05D000679 ORTHO05D000482 8.6e-10 67.8 80 35.0
Nitab4.5_0008752g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000482 1.1e-09 67.4 80 37.5
CAN.G1389.27 Capsicum annuum HOM05D000541 ORTHO05D000137 1.9e-09 66.6 60 46.7
Nitab4.5_0000326g0300 Nicotiana tabacum HOM05D005063 ORTHO05D000482 1.9e-09 66.6 142 28.2
Solyc08g065193.1 Solanum lycopersicum HOM05D002262 ORTHO05D000482 1.9e-09 66.6 63 44.4
CAN.G226.24 Capsicum annuum HOM05D000679 ORTHO05D000137 2.5e-09 66.2 99 26.3
Nitab4.5_0006644g0120 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.5e-09 66.2 73 38.4
Nitab4.5_0004192g0010 Nicotiana tabacum HOM05D006812 ORTHO05D000482 3.3e-09 65.9 65 41.5
CAN.G1344.11 Capsicum annuum HOM05D000679 ORTHO05D000482 4.3e-09 65.5 106 33.0
Nitab4.5_0002005g0040 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.3e-09 65.5 57 43.9
Sopen01g022800 Solanum pennellii HOM05D000679 ORTHO05D000482 4.3e-09 65.5 69 37.7
Sopen10g010760 Solanum pennellii HOM05D000002 ORTHO05D000001 4.3e-09 65.5 109 31.2
PGSC0003DMG400000031 Solanum tuberosum HOM05D005063 ORTHO05D000482 5.6e-09 65.1 106 34.0
Solyc01g150118.1 Solanum lycopersicum HOM05D009268 ORTHO05D000482 9.5e-09 64.3 76 39.5
Solyc10g150130.1 Solanum lycopersicum HOM05D002262 ORTHO05D000482 9.5e-09 64.3 63 42.9
Nitab4.5_0001018g0090 Nicotiana tabacum HOM05D000679 ORTHO05D000482 1.2e-08 63.9 80 37.5
Solyc11g061985.1 Solanum lycopersicum HOM05D002262 ORTHO05D000482 1.2e-08 63.9 76 38.2
Nitab4.5_0000487g0040 Nicotiana tabacum HOM05D006812 ORTHO05D000482 1.6e-08 63.5 116 30.2
Nitab4.5_0001425g0150 Nicotiana tabacum HOM05D000679 ORTHO05D000482 1.6e-08 63.5 76 36.8
Solyc01g094420.3 Solanum lycopersicum HOM05D005063 ORTHO05D000482 1.6e-08 63.5 147 29.9
Sopen01g038220 Solanum pennellii HOM05D005063 ORTHO05D000482 1.6e-08 63.5 156 30.1
CAN.G70.13 Capsicum annuum HOM05D000541 ORTHO05D000137 2.8e-08 62.8 60 43.3
Nitab4.5_0010313g0020 Nicotiana tabacum HOM05D005877 ORTHO05D000482 2.8e-08 62.8 91 33.0
Solyc09g150135.1 Solanum lycopersicum HOM05D010988 ORTHO05D000137 2.8e-08 62.8 68 38.2
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 3.6e-08 62.4 115 33.0
Nitab4.5_0001558g0030 Nicotiana tabacum HOM05D006812 ORTHO05D000482 3.6e-08 62.4 68 41.2
Nitab4.5_0003111g0010 Nicotiana tabacum HOM05D005063 ORTHO05D000482 3.6e-08 62.4 145 28.3
Nitab4.5_0024925g0010 Nicotiana tabacum HOM05D006812 ORTHO05D000482 3.6e-08 62.4 64 40.6
Solyc06g008150.3 Solanum lycopersicum HOM05D005063 ORTHO05D000482 3.6e-08 62.4 160 28.1
Sopen06g002980 Solanum pennellii HOM05D005063 ORTHO05D000482 3.6e-08 62.4 160 28.1
CAN.G568.8 Capsicum annuum HOM05D000541 ORTHO05D000137 4.7e-08 62.0 113 31.0
Nitab4.5_0006980g0050 Nicotiana tabacum HOM05D005063 ORTHO05D000482 4.7e-08 62.0 113 30.1
Nitab4.5_0009150g0040 Nicotiana tabacum HOM05D006812 ORTHO05D000482 4.7e-08 62.0 65 38.5
Nitab4.5_0012299g0030 Nicotiana tabacum HOM05D005063 ORTHO05D000482 4.7e-08 62.0 154 27.3
CAN.G1036.11 Capsicum annuum HOM05D000541 ORTHO05D000137 6.2e-08 61.6 58 48.3
CAN.G546.61 Capsicum annuum HOM05D000541 ORTHO05D000137 6.2e-08 61.6 55 43.6
Nitab4.5_0008487g0030 Nicotiana tabacum HOM05D006812 ORTHO05D000482 6.2e-08 61.6 49 40.8
Nitab4.5_0002160g0110 Nicotiana tabacum HOM05D000713 ORTHO05D000482 8.1e-08 61.2 145 29.0
CAN.G637.41 Capsicum annuum HOM05D000679 ORTHO05D000137 1.1e-07 60.8 113 29.2
Nitab4.5_0005135g0050 Nicotiana tabacum HOM05D006812 ORTHO05D000482 1.1e-07 60.8 66 40.9
CAN.G1077.11 Capsicum annuum HOM05D000679 ORTHO05D000137 1.4e-07 60.5 69 33.3
CAN.G158.15 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-07 60.5 127 27.6
Nitab4.5_0000576g0030 Nicotiana tabacum HOM05D006812 ORTHO05D000482 1.4e-07 60.5 65 38.5
Nitab4.5_0001230g0050 Nicotiana tabacum HOM05D006812 ORTHO05D000482 1.4e-07 60.5 64 40.6
CAN.G476.3 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-07 60.1 60 43.3
CAN.G64.1 Capsicum annuum HOM05D000005 ORTHO05D000137 1.8e-07 60.1 53 41.5
PGSC0003DMG400014694 Solanum tuberosum HOM05D005063 ORTHO05D000482 1.8e-07 60.1 60 43.3
Nitab4.5_0000306g0070 Nicotiana tabacum HOM05D000679 ORTHO05D000482 2.3e-07 59.7 45 51.1
Nitab4.5_0013596g0030 Nicotiana tabacum HOM05D005063 ORTHO05D000482 2.3e-07 59.7 154 26.6
CAN.G745.11 Capsicum annuum HOM05D000541 ORTHO05D000137 3.1e-07 59.3 52 46.2
Nitab4.5_0003392g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000482 3.1e-07 59.3 61 37.7
CAN.G1245.5 Capsicum annuum HOM05D000679 ORTHO05D000137 4.0e-07 58.9 102 32.4
Nitab4.5_0000227g0060 Nicotiana tabacum HOM05D005063 ORTHO05D000482 4.0e-07 58.9 72 41.7
Nitab4.5_0001863g0140 Nicotiana tabacum HOM05D005063 ORTHO05D000482 5.2e-07 58.5 132 28.0
Nitab4.5_0007565g0050 Nicotiana tabacum HOM05D006812 ORTHO05D000482 6.8e-07 58.2 64 40.6
CAN.G362.44 Capsicum annuum HOM05D000679 ORTHO05D000137 8.9e-07 57.8 104 29.8
CAN.G84.22 Capsicum annuum HOM05D000541 ORTHO05D000137 8.9e-07 57.8 71 35.2
Nitab4.5_0000335g0030 Nicotiana tabacum HOM05D000679 ORTHO05D000482 8.9e-07 57.8 55 45.5
Nitab4.5_0000924g0020 Nicotiana tabacum HOM05D005063 ORTHO05D000482 8.9e-07 57.8 67 38.8
CAN.G575.73 Capsicum annuum HOM05D000679 ORTHO05D000137 1.2e-06 57.4 69 31.9
Nitab4.5_0000434g0030 Nicotiana tabacum HOM05D008108 ORTHO05D000137 1.2e-06 57.4 48 45.8
Nitab4.5_0002279g0010 Nicotiana tabacum HOM05D005063 ORTHO05D000482 1.2e-06 57.4 156 24.4
PGSC0003DMG400023258 Solanum tuberosum HOM05D000541 ORTHO05D000137 1.2e-06 57.4 85 31.8
CAN.G413.23 Capsicum annuum HOM05D000679 ORTHO05D000137 1.5e-06 57.0 102 30.4
CAN.G971.1 Capsicum annuum HOM05D000679 ORTHO05D000137 1.5e-06 57.0 91 29.7
Nitab4.5_0005263g0010 Nicotiana tabacum HOM05D005877 ORTHO05D010356 1.5e-06 57.0 109 29.4
Nitab4.5_0009593g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000482 1.5e-06 57.0 134 25.4
Nitab4.5_0019527g0010 Nicotiana tabacum HOM05D005063 ORTHO05D000482 1.5e-06 57.0 154 26.0
CAN.G1247.1 Capsicum annuum HOM05D000679 ORTHO05D000482 2.0e-06 56.6 64 34.4
Nitab4.5_0000113g0280 Nicotiana tabacum HOM05D002262 ORTHO05D000482 2.0e-06 56.6 51 45.1
Nitab4.5_0000721g0150 Nicotiana tabacum HOM05D006812 ORTHO05D000482 2.0e-06 56.6 65 35.4
Nitab4.5_0001267g0030 Nicotiana tabacum HOM05D006812 ORTHO05D000482 2.0e-06 56.6 65 35.4
Nitab4.5_0002432g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000482 2.0e-06 56.6 42 52.4
Sopen02g001060 Solanum pennellii HOM05D000541 ORTHO05D000137 2.0e-06 56.6 54 40.7
Sopen02g032120 Solanum pennellii HOM05D000541 ORTHO05D000137 2.0e-06 56.6 54 40.7
CAN.G1277.5 Capsicum annuum HOM05D000679 ORTHO05D000482 2.6e-06 56.2 45 51.1
Sopen00g004650 Solanum pennellii HOM05D000679 ORTHO05D000137 2.6e-06 56.2 86 31.4
CAN.G1415.4 Capsicum annuum HOM05D000679 ORTHO05D000137 3.4e-06 55.8 62 40.3
Nitab4.5_0001024g0040 Nicotiana tabacum HOM05D002262 ORTHO05D000482 3.4e-06 55.8 83 26.5
Sopen01g032160 Solanum pennellii HOM05D000541 ORTHO05D012255 3.4e-06 55.8 55 40.0
CAN.G1659.8 Capsicum annuum HOM05D000679 ORTHO05D000137 4.4e-06 55.5 102 30.4
CAN.G20.4 Capsicum annuum HOM05D000541 ORTHO05D000482 4.4e-06 55.5 76 35.5
Nitab4.5_0000355g0090 Nicotiana tabacum HOM05D000679 ORTHO05D000482 4.4e-06 55.5 45 44.4
Nitab4.5_0010898g0020 Nicotiana tabacum HOM05D002262 ORTHO05D000482 4.4e-06 55.5 89 29.2
Sopen02g006090 Solanum pennellii HOM05D000541 ORTHO05D000137 4.4e-06 55.5 58 34.5
Sopen01g014180 Solanum pennellii HOM05D000679 ORTHO05D000137 5.8e-06 55.1 86 30.2
Sopen04g016450 Solanum pennellii HOM05D000541 ORTHO05D000137 5.8e-06 55.1 58 34.5
Nitab4.5_0001173g0040 Nicotiana tabacum HOM05D005063 ORTHO05D000482 7.6e-06 54.7 108 28.7
Nitab4.5_0007528g0010 Nicotiana tabacum HOM05D006812 ORTHO05D000482 7.6e-06 54.7 51 39.2
PGSC0003DMG400005561 Solanum tuberosum HOM05D000541 ORTHO05D023154 7.6e-06 54.7 89 34.8
CAN.G532.22 Capsicum annuum HOM05D000541 ORTHO05D000137 9.9e-06 54.3 45 44.4
Nitab4.5_0000471g0160 Nicotiana tabacum HOM05D005877 ORTHO05D000482 9.9e-06 54.3 45 46.7


User provided reference genes

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