Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 7.4e-70 266.9 121 100.0
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 7.7e-51 203.8 118 77.1
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 3.1e-44 181.8 121 66.9
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 9.1e-44 180.3 121 66.9
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 3.8e-42 174.9 114 68.4
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 5.0e-42 174.5 121 64.5
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 8.0e-40 167.2 100 76.0
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 4.0e-39 164.9 117 61.5
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 2.0e-38 162.5 119 63.9
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.1e-36 155.2 119 63.9
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 2.7e-35 152.1 107 65.4
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.1e-33 146.7 123 57.7
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 1.5e-33 146.4 109 59.6
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.9e-33 146.0 120 58.3
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.3e-31 139.0 95 63.2
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 4.0e-31 138.3 109 55.0
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 3.0e-26 122.1 115 47.8
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 1.1e-25 120.2 121 46.3
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.1e-25 120.2 113 52.2
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 2.5e-25 119.0 113 52.2
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.3e-25 117.5 119 43.7
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.2e-24 116.7 113 50.4
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.2e-24 116.7 113 50.4
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.6e-24 116.3 115 50.4
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 2.1e-24 115.9 122 45.9
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 8.0e-24 114.0 116 47.4
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.1e-23 112.1 119 47.1
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 5.2e-23 111.3 109 46.8
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 5.2e-23 111.3 109 47.7
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 8.9e-23 110.5 109 48.6
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 2.0e-22 109.4 122 41.0
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 2.6e-22 109.0 121 43.0
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 3.4e-22 108.6 108 46.3
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 3.4e-22 108.6 109 46.8
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.4e-22 108.6 110 49.1
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 4.4e-22 108.2 116 44.0
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 4.4e-22 108.2 108 44.4
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 4.4e-22 108.2 108 44.4
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 5.8e-22 107.8 115 42.6
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 5.8e-22 107.8 108 45.4
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 7.5e-22 107.5 108 43.5
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 9.8e-22 107.1 108 45.4
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 9.8e-22 107.1 108 45.4
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.3e-21 106.7 98 48.0
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.2e-21 105.9 108 44.4
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 2.9e-21 105.5 109 47.7
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.9e-21 105.5 113 41.6
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.7e-21 105.1 108 44.4
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.7e-21 105.1 119 43.7
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 4.9e-21 104.8 109 45.9
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 4.9e-21 104.8 109 45.9
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 6.4e-21 104.4 108 45.4
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 6.4e-21 104.4 115 43.5
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 1.1e-20 103.6 114 45.6
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 1.4e-20 103.2 117 41.9
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 1.4e-20 103.2 117 41.9
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 1.9e-20 102.8 108 42.6
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.4e-20 102.4 120 45.8
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 3.2e-20 102.1 113 41.6
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 3.2e-20 102.1 114 45.6
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 3.2e-20 102.1 99 50.5
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 3.2e-20 102.1 114 44.7
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.1e-20 101.7 115 42.6
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 5.4e-20 101.3 108 44.4
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 9.2e-20 100.5 115 40.9
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 9.2e-20 100.5 113 42.5
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 1.2e-19 100.1 114 41.2
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 1.2e-19 100.1 114 44.7
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 1.6e-19 99.8 100 47.0
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.6e-19 99.8 99 49.5
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 2.0e-19 99.4 108 43.5
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 2.0e-19 99.4 104 46.2
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 2.7e-19 99.0 102 44.1
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 2.7e-19 99.0 108 43.5
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 3.5e-19 98.6 108 43.5
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.6e-19 98.2 108 41.7
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.0e-19 97.8 114 43.9
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.8e-19 97.4 107 37.4
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.0e-18 97.1 111 42.3
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.3e-18 96.7 104 44.2
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 1.7e-18 96.3 120 39.2
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.7e-18 96.3 104 44.2
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 2.3e-18 95.9 112 39.3
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.6e-18 94.0 114 39.5
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.1e-17 93.6 95 47.4
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 1.1e-17 93.6 101 43.6
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 1.5e-17 93.2 109 39.4
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 1.5e-17 93.2 107 39.3
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 1.9e-17 92.8 109 40.4
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.9e-17 92.8 114 39.5
Nitab4.5_0000771g0200 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.3e-17 92.0 106 47.2
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 3.3e-17 92.0 110 40.0
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 7.3e-17 90.9 110 39.1
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.2e-16 90.1 105 37.1
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.2e-16 87.8 100 39.0
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 2.3e-15 85.9 109 34.9
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 6.8e-15 84.3 116 38.8
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 8.9e-15 84.0 101 41.6
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.5e-14 83.2 108 34.3
Nitab4.5_0006691g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.5e-14 83.2 86 52.3
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.4e-14 82.0 109 37.6
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.4e-14 82.0 107 32.7
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 4.4e-14 81.6 76 50.0
PGR031G2486 Punica granatum HOM05D023640 ORTHO05D019592 2.2e-13 79.3 110 37.3
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 6.4e-13 77.8 117 33.3
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 8.3e-13 77.4 106 36.8
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.4e-12 75.9 106 34.9
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 2.4e-12 75.9 77 46.8
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 9.2e-12 73.9 107 32.7
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 9.2e-12 73.9 107 32.7
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 1.3e-10 70.1 100 34.0
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 3.9e-10 68.6 62 53.2
PGR031G3557 Punica granatum HOM05D023640 ORTHO05D019592 1.9e-09 66.2 103 34.0
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.5e-09 65.9 89 33.7
AagrBONN_evm.TU.Sc2ySwM_344.1627 Anthoceros agrestis HOM05D032606 ORTHO05D007872 4.3e-09 65.1 112 25.9
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.2e-08 63.5 62 50.0
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 1.2e-08 63.5 109 36.7
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 1.6e-08 63.2 50 58.0
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 6.2e-08 61.2 98 29.6
Manes.01G119300 Manihot esculenta HOM05D000655 ORTHO05D001166 1.8e-07 59.7 99 30.3
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 2.3e-07 59.3 111 27.0
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.1e-07 58.9 101 31.7
Thecc.06G211700 Theobroma cacao HOM05D000022 ORTHO05D000071 5.2e-07 58.2 53 47.2
TWI36G1446 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 5.2e-07 58.2 100 32.0
SEGI_22649 Sequoiadendron giganteum HOM05D000022 ORTHO05D000306 8.9e-07 57.4 100 34.0
Eucgr.B02954 Eucalyptus grandis HOM05D000655 ORTHO05D001166 2.6e-06 55.8 99 28.3
PGR042G0933 Punica granatum HOM05D000655 ORTHO05D001166 3.4e-06 55.5 99 27.3
SEGI_28302 Sequoiadendron giganteum HOM05D000022 ORTHO05D000306 3.4e-06 55.5 101 31.7
AagrBONN_evm.TU.Sc2ySwM_368.904 Anthoceros agrestis HOM05D032606 ORTHO05D007872 5.8e-06 54.7 101 28.7
MBI18_g24406_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000306 5.8e-06 54.7 63 38.1
QL03p035062 Quercus lobata HOM05D000655 ORTHO05D001166 5.8e-06 54.7 101 28.7
SEGI_30790 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 5.8e-06 54.7 100 34.0
CANSAT54G1332 Cannabis sativa HOM05D000022 ORTHO05D000306 7.6e-06 54.3 52 44.2
Sed0006039 Sechium edule HOM05D000655 ORTHO05D001166 7.6e-06 54.3 99 29.3
TWI38G0054 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 7.6e-06 54.3 57 42.1
arahy.Tifrunner.gnm1.ann1.B5SPTF Arachis hypogaea HOM05D000655 ORTHO05D001166 9.9e-06 53.9 98 27.6
EL10Ac7g16587 Beta vulgaris HOM05D000022 ORTHO05D000306 9.9e-06 53.9 90 31.1
Nn1g06987 Nelumbo nucifera HOM05D000022 ORTHO05D000071 9.9e-06 53.9 52 44.2
Phvul.004G125100 Phaseolus vulgaris HOM05D000022 ORTHO05D010537 9.9e-06 53.9 108 28.7


User provided reference genes

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