Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400046724 Solanum tuberosum HOM05D034039 ORTHO05D009044 1.5e-258 895.6 428 100.0
PGSC0003DMG400030538 Solanum tuberosum HOM05D034039 ORTHO05D009044 7.4e-189 664.1 436 76.4
CAN.G1298.26 Capsicum annuum HOM05D034039 ORTHO05D009044 2.2e-164 582.8 408 72.8
Duzib132G1061 Durio zibethinus HOM05D007346 ORTHO05D009044 6.1e-26 122.9 450 26.0
Cfa005319 Carpinus fangiana HOM05D007346 ORTHO05D009044 3.0e-25 120.6 444 27.0
Cfa005279 Carpinus fangiana HOM05D007346 ORTHO05D009044 4.4e-24 116.7 448 27.5
FAN20G2910 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.4e-24 116.7 461 26.9
Haze_02115 Corylus avellana HOM05D007346 ORTHO05D009044 1.7e-23 114.8 434 25.6
Ciclev10030189m.g Citrus clementina HOM05D007346 ORTHO05D009044 2.8e-23 114.0 472 26.3
Haze_02114 Corylus avellana HOM05D007346 ORTHO05D009044 3.1e-22 110.5 448 24.8
Prupe.8G152400 Prunus persica HOM05D007346 ORTHO05D009044 3.8e-20 103.6 469 24.3
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.0e-20 103.2 384 28.9
Thecc.02G045400 Theobroma cacao HOM05D007346 ORTHO05D009044 6.6e-20 102.8 452 26.8
CAN.G1334.17 Capsicum annuum HOM05D000541 ORTHO05D000137 9.5e-19 99.0 108 50.0
FvH4_4g02080 Fragaria vesca HOM05D007346 ORTHO05D009044 9.5e-19 99.0 471 23.8
CAN.G1334.14 Capsicum annuum HOM05D000541 ORTHO05D000137 4.7e-18 96.7 108 50.0
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 4.7e-18 96.7 458 23.8
Gorai.009G294900 Gossypium raimondii HOM05D007346 ORTHO05D009044 8.0e-18 95.9 453 26.0
Thecc.02G045200 Theobroma cacao HOM05D007346 ORTHO05D009044 8.0e-18 95.9 420 25.0
RcHm_v2.0_Chr4g0388171 Rosa chinensis HOM05D007346 ORTHO05D009044 1.4e-17 95.1 494 23.9
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-17 95.1 456 24.3
RcHm_v2.0_Chr5g0063131 Rosa chinensis HOM05D007346 ORTHO05D009044 1.8e-17 94.7 488 23.8
FvH4_4g01970 Fragaria vesca HOM05D007346 ORTHO05D009044 4.0e-17 93.6 469 23.7
Prupe.8G151600 Prunus persica HOM05D007346 ORTHO05D009044 4.0e-17 93.6 490 24.9
RcHm_v2.0_Chr6g0254611 Rosa chinensis HOM05D007346 ORTHO05D009044 6.8e-17 92.8 324 25.9
RcHm_v2.0_Chr6g0254631 Rosa chinensis HOM05D007346 ORTHO05D009044 8.9e-17 92.4 324 25.6
FvH4_4g02090 Fragaria vesca HOM05D007346 ORTHO05D009044 1.5e-16 91.7 451 22.8
Gohir.D05G281400 Gossypium hirsutum HOM05D007346 ORTHO05D009044 2.6e-16 90.9 454 26.0
PSO170G4594 Papaver somniferum HOM05D000151 ORTHO05D000074 4.4e-16 90.1 456 25.4
FAN12G0105 Fragaria x ananassa HOM05D007346 ORTHO05D009044 7.5e-16 89.4 469 23.2
FvH4_4g01551 Fragaria vesca HOM05D007346 ORTHO05D009044 2.2e-15 87.8 235 29.4
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 2.9e-15 87.4 434 23.5
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 2.9e-15 87.4 404 25.0
Gohir.A05G279800 Gossypium hirsutum HOM05D007346 ORTHO05D009044 3.7e-15 87.0 460 24.6
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 6.3e-15 86.3 453 24.1
FAN24G1006 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.3e-15 86.3 491 22.0
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.3e-15 86.3 129 41.1
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.3e-15 86.3 129 41.1
RcHm_v2.0_Chr4g0393391 Rosa chinensis HOM05D007346 ORTHO05D009044 8.3e-15 85.9 513 22.4
CSS0022996 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 1.1e-14 85.5 440 23.9
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 1.1e-14 85.5 229 28.8
FvH4_2g04880 Fragaria vesca HOM05D007346 ORTHO05D009044 1.4e-14 85.1 490 21.8
FAN12G2737 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.8e-14 84.7 450 24.4
TWI81G1010 Tripterygium wilfordii HOM05D007346 ORTHO05D009044 1.8e-14 84.7 487 24.2
FvH4_2g03731 Fragaria vesca HOM05D007346 ORTHO05D009044 2.4e-14 84.3 473 23.3
FAN24G3549 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.4e-14 84.3 495 23.4
Cfa005278 Carpinus fangiana HOM05D007346 ORTHO05D009044 3.2e-14 84.0 223 28.7
FAN18G1252 Fragaria x ananassa HOM05D007346 ORTHO05D009044 7.0e-14 82.8 418 25.8
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 9.2e-14 82.4 434 23.7
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.2e-13 82.0 442 26.2
Thecc.03G275800 Theobroma cacao HOM05D000151 ORTHO05D000074 1.2e-13 82.0 428 22.0
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.2e-13 82.0 238 26.5
FvH4_2g04271 Fragaria vesca HOM05D007346 ORTHO05D009044 3.5e-13 80.5 481 23.5
RcHm_v2.0_Chr4g0393471 Rosa chinensis HOM05D007346 ORTHO05D009044 7.8e-13 79.3 233 26.6
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 1.0e-12 79.0 456 23.0
FvH4_2g16580 Fragaria vesca HOM05D007346 ORTHO05D009044 1.3e-12 78.6 495 22.8
RcHm_v2.0_Chr4g0393001 Rosa chinensis HOM05D007346 ORTHO05D009044 1.3e-12 78.6 235 26.4
Lsat_1_v5_gn_2_5520 Lactuca sativa HOM05D000151 ORTHO05D000074 2.3e-12 77.8 444 23.6
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-12 77.8 229 27.1
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-12 77.8 229 27.1
Dinv40803 Davidia involucrata HOM05D000151 ORTHO05D000074 2.9e-12 77.4 432 24.1
FAN15G1511 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.9e-12 77.4 466 23.2
MD03G1012300 Malus domestica HOM05D007346 ORTHO05D009044 2.9e-12 77.4 397 25.9
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 2.9e-12 77.4 463 24.2
SGA_v2.0_scaffold32G13296 Striga asiatica HOM05D028864 ORTHO05D009044 2.9e-12 77.4 438 23.1
FAN22G0819 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.6e-12 76.3 384 23.2
Lalb_Chr06g0166761 Lupinus albus HOM05D000151 ORTHO05D000074 8.6e-12 75.9 447 23.0
Actinidia15471 Actinidia chinensis HOM05D000151 ORTHO05D000074 1.1e-11 75.5 446 24.4
Lalb_Chr06g0166651 Lupinus albus HOM05D000151 ORTHO05D000074 1.9e-11 74.7 446 22.6
PSO210G2694 Papaver somniferum HOM05D000151 ORTHO05D000074 1.9e-11 74.7 227 28.2
RcHm_v2.0_Chr6g0254551 Rosa chinensis HOM05D007346 ORTHO05D009044 1.9e-11 74.7 493 22.1
Potri.004G134900 Populus trichocarpa HOM05D000151 ORTHO05D000074 3.3e-11 73.9 452 23.7
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 4.3e-11 73.6 229 27.9
FvH4_2g03062 Fragaria vesca HOM05D007346 ORTHO05D009044 5.6e-11 73.2 138 31.2
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 9.5e-11 72.4 130 30.8
Cc11_g10930 Coffea canephora HOM05D000151 ORTHO05D000074 1.2e-10 72.0 448 23.9
QL04p012604 Quercus lobata HOM05D000151 ORTHO05D000074 1.2e-10 72.0 441 23.8
Aqoxy4G01250 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.1e-10 71.2 402 23.4
Aqoxy3G03869 Aquilegia oxysepala HOM05D007346 ORTHO05D009044 2.8e-10 70.9 227 25.6
Cfa018500 Carpinus fangiana HOM05D000151 ORTHO05D000074 2.8e-10 70.9 370 23.0
FAN17G3078 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.8e-10 70.9 423 22.5
FAN24G2319 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.8e-10 70.9 138 30.4
Lalb_Chr06g0166631 Lupinus albus HOM05D000151 ORTHO05D000074 2.8e-10 70.9 446 22.0
FvH4_4g01590 Fragaria vesca HOM05D007346 ORTHO05D009044 3.6e-10 70.5 427 23.7
RcHm_v2.0_Chr4g0388141 Rosa chinensis HOM05D007346 ORTHO05D009044 4.7e-10 70.1 135 28.1
FAN21G1548 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.2e-10 69.7 422 25.4
Gorai.009G294800 Gossypium raimondii HOM05D007346 ORTHO05D009044 6.2e-10 69.7 236 30.1
MBI06_g17230_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 8.0e-10 69.3 207 25.1
FvH4_5g33551 Fragaria vesca HOM05D007346 ORTHO05D009044 1.0e-09 68.9 418 25.1
Nn7g38181 Nelumbo nucifera HOM05D001286 ORTHO05D000440 1.0e-09 68.9 128 31.2
AUR62013850 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.4e-09 68.6 407 24.8
AUR62017307 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.4e-09 68.6 424 22.9
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.4e-09 68.6 127 30.7
TAR626G1895 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-09 68.6 441 23.1
Aqoxy5G01075 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.8e-09 68.2 121 33.1
QL04p012573 Quercus lobata HOM05D000151 ORTHO05D000074 1.8e-09 68.2 443 25.7
QL04p013607 Quercus lobata HOM05D000151 ORTHO05D000074 1.8e-09 68.2 443 25.7
Eucgr.B03923 Eucalyptus grandis HOM05D000151 ORTHO05D000074 2.3e-09 67.8 399 23.1
Aqoxy3G03868 Aquilegia oxysepala HOM05D007346 ORTHO05D009044 3.1e-09 67.4 199 27.6
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 3.1e-09 67.4 414 25.1
RcHm_v2.0_Chr6g0254681 Rosa chinensis HOM05D007346 ORTHO05D009044 3.1e-09 67.4 342 24.0
Sed0007657 Sechium edule HOM05D000151 ORTHO05D000074 4.0e-09 67.0 448 22.5
Lalb_Chr06g0166721 Lupinus albus HOM05D000151 ORTHO05D000074 5.2e-09 66.6 449 23.4
Atru.chr5.3529 Acer truncatum HOM05D007346 ORTHO05D009044 6.8e-09 66.2 104 38.5
FAN24G3266 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.2e-08 65.5 385 22.6
FAN25G0093 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.2e-08 65.5 133 34.6
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 1.2e-08 65.5 447 24.4
QL04p010169 Quercus lobata HOM05D000151 ORTHO05D000074 1.2e-08 65.5 422 25.6
FvH4_4g01581 Fragaria vesca HOM05D007346 ORTHO05D009044 1.5e-08 65.1 409 21.5
FvH4_4g04480 Fragaria vesca HOM05D000151 ORTHO05D000074 1.5e-08 65.1 383 24.0
FvH4_4g02150 Fragaria vesca HOM05D007346 ORTHO05D009044 2.0e-08 64.7 376 22.1
PGR042G2337 Punica granatum HOM05D000151 ORTHO05D000074 2.0e-08 64.7 461 23.4
QL04p013569 Quercus lobata HOM05D000151 ORTHO05D000074 2.0e-08 64.7 429 22.4
RcHm_v2.0_Chr4g0395201 Rosa chinensis HOM05D000151 ORTHO05D000074 2.0e-08 64.7 414 24.9
Thecc.03G224900 Theobroma cacao HOM05D000151 ORTHO05D000074 2.6e-08 64.3 404 24.0
Aqoxy3G03870 Aquilegia oxysepala HOM05D007346 ORTHO05D016562 3.4e-08 63.9 120 29.2
Cfa014059 Carpinus fangiana HOM05D000151 ORTHO05D000074 3.4e-08 63.9 397 22.2
QL04p009939 Quercus lobata HOM05D000151 ORTHO05D000074 3.4e-08 63.9 431 23.0
CiPaw.07G005300 Carya illinoinensis HOM05D000151 ORTHO05D000074 4.4e-08 63.5 130 35.4
FvH4_2g16551 Fragaria vesca HOM05D007346 ORTHO05D009044 5.8e-08 63.2 392 22.7
Ca_15450_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 7.5e-08 62.8 437 22.4
FAN11G4008 Fragaria x ananassa HOM05D010931 ORTHO05D013603 7.5e-08 62.8 229 24.9
Lsat_1_v5_gn_9_46700 Lactuca sativa HOM05D000151 ORTHO05D000074 7.5e-08 62.8 448 21.4
MBI15_g47572_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 7.5e-08 62.8 137 27.7
MBI17_g17509_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 7.5e-08 62.8 129 31.8
Potri.002G015700 Populus trichocarpa HOM05D000151 ORTHO05D000074 7.5e-08 62.8 123 35.8
Sopen02g036600 Solanum pennellii HOM05D000151 ORTHO05D000074 7.5e-08 62.8 399 23.8
MBI15_g35731_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 9.8e-08 62.4 137 27.7
RcHm_v2.0_Chr3g0476221 Rosa chinensis HOM05D024214 ORTHO05D016562 9.8e-08 62.4 152 27.0
SGA_v2.0_scaffold32G13304 Striga asiatica HOM05D028864 ORTHO05D009044 9.8e-08 62.4 498 22.9
Haze_02452 Corylus avellana HOM05D000151 ORTHO05D000074 1.3e-07 62.0 376 24.5
COL.COLO4_17943 Corchorus olitorius HOM05D007346 ORTHO05D009044 1.7e-07 61.6 257 24.9
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 1.7e-07 61.6 122 32.0
RcHm_v2.0_Chr3g0452431 Rosa chinensis HOM05D000151 ORTHO05D000074 1.7e-07 61.6 114 35.1
AUR62017260 Chenopodium quinoa HOM05D000151 ORTHO05D000074 2.9e-07 60.8 152 30.9
FAN07G1148 Fragaria x ananassa HOM05D017087 ORTHO05D019163 2.9e-07 60.8 132 31.1
Dinv37497 Davidia involucrata HOM05D000151 ORTHO05D000074 3.7e-07 60.5 434 21.4
Sopen02g036610 Solanum pennellii HOM05D000644 ORTHO05D000504 3.7e-07 60.5 229 26.6
Aqoxy7G03306 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.9e-07 60.1 124 33.1
FvH4_3g28140 Fragaria vesca HOM05D010931 ORTHO05D013603 4.9e-07 60.1 229 24.5
FvH4_6g22212 Fragaria vesca HOM05D010931 ORTHO05D016562 4.9e-07 60.1 391 21.7
Hma1.2p1_0792F.1_g218540 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 4.9e-07 60.1 423 22.9
Lj2P494T20 Lonicera japonica HOM05D000151 ORTHO05D000074 8.3e-07 59.3 418 22.5
Aqoxy7G03016 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.1e-06 58.9 338 24.0
Aqoxy3G03769 Aquilegia oxysepala HOM05D007346 ORTHO05D000440 1.4e-06 58.5 140 29.3
Haze_22777 Corylus avellana HOM05D000151 ORTHO05D000074 1.4e-06 58.5 234 24.8
Peaxi162Scf00074g00087 Petunia axillaris HOM05D000151 ORTHO05D000074 1.4e-06 58.5 242 24.4
Aqoxy2G03845 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.9e-06 58.2 168 28.6
FAN12G4018 Fragaria x ananassa HOM05D017087 ORTHO05D019163 1.9e-06 58.2 132 31.8
FAN15G1854 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.9e-06 58.2 387 23.5
Peaxi162Scf00074g00086 Petunia axillaris HOM05D000151 ORTHO05D000074 1.9e-06 58.2 117 31.6
TAR636G1638 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.9e-06 58.2 126 30.2
Lj2P459T34 Lonicera japonica HOM05D000151 ORTHO05D000074 2.4e-06 57.8 407 22.4
Peaxi162Scf00074g00085 Petunia axillaris HOM05D000151 ORTHO05D000074 2.4e-06 57.8 242 24.8
Actinidia09337 Actinidia chinensis HOM05D000151 ORTHO05D000074 3.2e-06 57.4 461 22.8
Dinv43794 Davidia involucrata HOM05D000151 ORTHO05D000074 3.2e-06 57.4 125 32.8
Dinv43798 Davidia involucrata HOM05D000713 ORTHO05D000547 3.2e-06 57.4 125 32.8
MD10G1231500 Malus domestica HOM05D000151 ORTHO05D000074 3.2e-06 57.4 125 32.8
FAN24G3164 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.1e-06 57.0 153 28.8
Prupe.6G184200 Prunus persica HOM05D000151 ORTHO05D000074 4.1e-06 57.0 137 29.9
Prupe.6G184600 Prunus persica HOM05D000151 ORTHO05D000074 4.1e-06 57.0 137 29.9
PGR031G1698 Punica granatum HOM05D000151 ORTHO05D000074 4.1e-06 57.0 117 31.6
Lj2P496T12 Lonicera japonica HOM05D000151 ORTHO05D000074 7.0e-06 56.2 364 22.8
MD09G1027500 Malus domestica HOM05D006368 ORTHO05D006739 9.2e-06 55.8 486 20.2
Peaxi162Scf00119g01111 Petunia axillaris HOM05D000151 ORTHO05D000074 9.2e-06 55.8 117 32.5
SGA_v2.0_scaffold32G13300 Striga asiatica HOM05D028864 ORTHO05D009044 9.2e-06 55.8 125 32.0


User provided reference genes

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