Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400046241 Solanum tuberosum HOM05D004950 ORTHO05D004838 1.7e-52 209.1 112 100.0
Nitab4.5_0001874g0100 Nicotiana tabacum HOM05D004950 ORTHO05D004838 1.1e-19 100.1 85 67.1
Peaxi162Scf00569g00049 Petunia axillaris HOM05D004950 ORTHO05D004838 3.3e-16 88.6 74 66.2
CAN.G33.13 Capsicum annuum HOM05D004950 ORTHO05D004838 9.7e-16 87.0 86 57.0
Solyc07g009520.2 Solanum lycopersicum HOM05D004950 ORTHO05D004838 3.1e-14 82.0 76 61.8
PGSC0003DMG400020690 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.1e-14 82.0 76 61.8
unitig_32.g10703 Utricularia gibba HOM05D004950 ORTHO05D004838 4.1e-14 81.6 107 46.7
Lj4A899T58 Lonicera japonica HOM05D004950 ORTHO05D004838 1.6e-13 79.7 101 48.5
PGSC0003DMG400046492 Solanum tuberosum HOM05D004950 ORTHO05D004838 4.5e-13 78.2 75 58.7
MSTRG.3758 Avicennia marina HOM05D004950 ORTHO05D004838 7.7e-13 77.4 79 57.0
CAN.G905.19 Capsicum annuum HOM05D004950 ORTHO05D004838 7.7e-13 77.4 76 56.6
MD11G1200900 Malus domestica HOM05D004950 ORTHO05D004838 7.7e-13 77.4 106 45.3
PGSC0003DMG400016153 Solanum tuberosum HOM05D004950 ORTHO05D004838 7.7e-13 77.4 76 56.6
Lalb_Chr08g0230971 Lupinus albus HOM05D004950 ORTHO05D004838 2.2e-12 75.9 105 44.8
PGSC0003DMG400016794 Solanum tuberosum HOM05D004950 ORTHO05D004838 3.8e-12 75.1 107 47.7
Oeu033042.1 Olea europaea HOM05D004950 ORTHO05D004838 5.0e-12 74.7 107 45.8
vmacro12982 Vaccinium macrocarpon HOM05D004950 ORTHO05D004838 8.5e-12 73.9 106 44.3
Manes.12G130350 Manihot esculenta HOM05D002324 ORTHO05D002380 3.2e-11 72.0 87 49.4
CARHR246650 Cardamine hirsuta HOM05D004950 ORTHO05D004838 7.2e-11 70.9 90 44.4
Dinv13228 Davidia involucrata HOM05D004950 ORTHO05D004838 7.2e-11 70.9 92 47.8
CsaV3_UNG223520 Cucumis sativus L. HOM05D004950 ORTHO05D004838 9.4e-11 70.5 104 41.3
Actinidia28833 Actinidia chinensis HOM05D000288 ORTHO05D004838 1.6e-10 69.7 101 43.6
AL7G12330 Arabidopsis lyrata HOM05D004950 ORTHO05D004838 1.6e-10 69.7 90 43.3
Atru.chr3.1354 Acer truncatum HOM05D004950 ORTHO05D004838 2.1e-10 69.3 75 53.3
AT4G40020 Arabidopsis thaliana HOM05D004950 ORTHO05D004838 2.1e-10 69.3 90 43.3
MBI02_g33232_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004838 2.1e-10 69.3 96 50.0
Lj2C540T9 Lonicera japonica HOM05D004950 ORTHO05D004838 4.7e-10 68.2 90 44.4
Sp7g35850 Schrenkiella parvula HOM05D004950 ORTHO05D004838 6.1e-10 67.8 90 42.2
TAR376G0363 Trochodendron aralioides HOM05D004950 ORTHO05D004838 1.4e-09 66.6 74 48.6
ECA238G0370 Erigeron canadensis HOM05D004950 ORTHO05D004838 4.0e-09 65.1 75 48.0
Ah.02g126160 Amaranthus hybridus HOM05D004950 ORTHO05D004838 5.2e-09 64.7 74 48.6
Lsat_1_v5_gn_2_66121 Lactuca sativa HOM05D004950 ORTHO05D004838 6.8e-09 64.3 74 48.6
PGR102G2692 Punica granatum HOM05D004950 ORTHO05D004838 2.6e-08 62.4 68 48.5
DCAR_016618 Daucus carota HOM05D004950 ORTHO05D004838 5.7e-08 61.2 129 38.0
Cpa.g.sc55.78 Carica papaya HOM05D004950 ORTHO05D004838 7.5e-08 60.8 68 51.5
Oeu012397.1 Olea europaea HOM05D004950 ORTHO05D004838 7.5e-08 60.8 106 42.5
Cfa002603 Carpinus fangiana HOM05D004950 ORTHO05D004838 9.8e-08 60.5 61 54.1
AUR62003257 Chenopodium quinoa HOM05D004950 ORTHO05D004838 9.8e-08 60.5 91 41.8
AUR62027212 Chenopodium quinoa HOM05D004950 ORTHO05D004838 9.8e-08 60.5 91 41.8
Haze_24857 Corylus avellana HOM05D004950 ORTHO05D004838 9.8e-08 60.5 61 54.1
FAN28G2730 Fragaria x ananassa HOM05D004950 ORTHO05D004838 9.8e-08 60.5 97 39.2
HanXRQChr10g0314761 Helianthus annuus HOM05D004950 ORTHO05D004838 9.8e-08 60.5 112 35.7
unitig_748.g8651 Utricularia gibba HOM05D004950 ORTHO05D004838 9.8e-08 60.5 73 46.6
DCAR_003473 Daucus carota HOM05D004950 ORTHO05D004838 1.3e-07 60.1 104 37.5
Sc16g0000220 Simmondsia chinensis HOM05D004950 ORTHO05D004838 1.3e-07 60.1 106 36.8
Prupe.6G192500 Prunus persica HOM05D004950 ORTHO05D004838 1.7e-07 59.7 100 40.0
A01p00940 Brassica napus HOM05D004950 ORTHO05D004838 2.2e-07 59.3 90 40.0
C01p01070 Brassica napus HOM05D004950 ORTHO05D004838 2.2e-07 59.3 90 40.0
BraA01t00092Z Brassica rapa HOM05D004950 ORTHO05D004838 2.2e-07 59.3 90 40.0
Thhalv10027577m.g Eutrema salsugineum HOM05D004950 ORTHO05D004838 2.2e-07 59.3 68 47.1
HanXRQChr14g0445041 Helianthus annuus HOM05D004950 ORTHO05D004838 2.2e-07 59.3 75 44.0
HanXRQChr14g0445061 Helianthus annuus HOM05D004950 ORTHO05D004838 2.2e-07 59.3 97 40.2
FAN19G3038 Fragaria x ananassa HOM05D004950 ORTHO05D004838 2.8e-07 58.9 97 39.2
MD03G1184100 Malus domestica HOM05D004950 ORTHO05D004838 2.8e-07 58.9 100 38.0
FAN23G1536 Fragaria x ananassa HOM05D004950 ORTHO05D004838 3.7e-07 58.5 97 39.2
EL10As13g24047 Beta vulgaris HOM05D004950 ORTHO05D004838 4.8e-07 58.2 87 41.4
BolC1t00104H Brassica oleracea HOM05D004950 ORTHO05D004838 4.8e-07 58.2 90 38.9
Medtr3g086890 Medicago truncatula HOM05D004950 ORTHO05D004838 4.8e-07 58.2 60 51.7
Gohir.D11G054550 Gossypium hirsutum HOM05D004950 ORTHO05D004838 8.3e-07 57.4 74 44.6
TWI53G1075 Tripterygium wilfordii HOM05D004950 ORTHO05D004838 8.3e-07 57.4 70 45.7
CAN.G712.13 Capsicum annuum HOM05D004950 ORTHO05D004838 1.1e-06 57.0 103 40.8
FvH4_1g20290 Fragaria vesca HOM05D004950 ORTHO05D004838 1.1e-06 57.0 97 38.1
MELO3C017599.2 Cucumis melo HOM05D004950 ORTHO05D004838 1.4e-06 56.6 61 47.5
Eucgr.H04743 Eucalyptus grandis HOM05D004950 ORTHO05D004838 1.4e-06 56.6 106 39.6
Gohir.A11G051150 Gossypium hirsutum HOM05D004950 ORTHO05D004838 1.4e-06 56.6 73 46.6
DCAR_014205 Daucus carota HOM05D004950 ORTHO05D004838 1.8e-06 56.2 74 45.9
Rhsim08G0013200 Rhododendron simsii HOM05D004950 ORTHO05D004838 1.8e-06 56.2 61 50.8
QL06p048197 Quercus lobata HOM05D004950 ORTHO05D004838 2.4e-06 55.8 58 48.3
RcHm_v2.0_Chr2g0112431 Rosa chinensis HOM05D004950 ORTHO05D004838 2.4e-06 55.8 97 36.1
Ciclev10026989m.g Citrus clementina HOM05D004950 ORTHO05D000003 3.1e-06 55.5 56 57.1
FAN26G1097 Fragaria x ananassa HOM05D000001 ORTHO05D004838 3.1e-06 55.5 97 37.1
TPR.G16026 Trifolium pratense HOM05D004950 ORTHO05D004838 3.1e-06 55.5 57 50.9
CsaV3_4G004650 Cucumis sativus L. HOM05D004950 ORTHO05D004838 4.1e-06 55.1 105 36.2
CsaV3_UNG131010 Cucumis sativus L. HOM05D004950 ORTHO05D004838 4.1e-06 55.1 105 36.2
CsaV3_UNG154160 Cucumis sativus L. HOM05D004950 ORTHO05D004838 4.1e-06 55.1 105 36.2
Gorai.007G059800 Gossypium raimondii HOM05D004950 ORTHO05D004838 5.4e-06 54.7 74 43.2
Lj6g0021918 Lotus japonicus HOM05D004950 ORTHO05D004838 5.4e-06 54.7 60 50.0
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 9.1e-06 53.9 109 33.9
Lalb_Chr11g0075431 Lupinus albus HOM05D004950 ORTHO05D004838 9.1e-06 53.9 98 38.8
PSO302G0004 Papaver somniferum HOM05D004950 ORTHO05D004838 9.1e-06 53.9 70 44.3
Psat2g012840 Pisum sativum HOM05D004950 ORTHO05D004838 9.1e-06 53.9 60 50.0


User provided reference genes

Program Settings