Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 2.4e-142 508.8 263 100.0
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 6.5e-119 431.0 244 91.8
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 1.8e-116 422.9 238 92.0
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 4.8e-98 361.7 264 74.6
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 1.2e-88 330.5 244 73.0
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 7.0e-73 278.1 237 64.6
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 2.1e-37 160.2 259 42.5
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 1.2e-35 154.5 236 41.5
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 9.9e-27 124.8 253 36.4
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 3.8e-26 122.9 227 42.3
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 8.4e-26 121.7 219 34.2
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 1.1e-25 121.3 264 36.0
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 3.2e-25 119.8 249 36.1
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 9.3e-25 118.2 257 34.2
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 4.6e-24 115.9 247 36.0
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 1.7e-23 114.0 232 38.8
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 3.0e-23 113.2 248 34.3
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 6.6e-23 112.1 209 40.7
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 1.1e-22 111.3 234 36.8
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.5e-22 110.9 246 36.6
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 1.9e-22 110.5 240 36.2
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 5.6e-22 109.0 247 34.0
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 7.3e-22 108.6 244 36.1
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 4.8e-21 105.9 258 34.9
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 6.2e-21 105.5 241 34.9
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 8.1e-21 105.1 253 34.0
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 1.4e-20 104.4 268 33.2
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 2.4e-20 103.6 248 34.3
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 6.9e-20 102.1 240 35.0
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 1.2e-19 101.3 255 34.9
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 1.5e-19 100.9 237 30.4
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 5.8e-19 99.0 246 32.1
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 9.9e-19 98.2 277 28.5
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 1.7e-18 97.4 240 32.1
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 2.9e-18 96.7 248 31.9
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 2.9e-18 96.7 250 31.6
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 4.9e-18 95.9 251 33.9
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 4.9e-18 95.9 249 34.1
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 4.9e-18 95.9 242 33.1
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 6.4e-18 95.5 248 33.9
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 1.4e-17 94.4 247 30.4
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 1.4e-17 94.4 238 35.3
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 1.4e-17 94.4 244 34.0
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.4e-17 93.6 249 33.7
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 4.2e-17 92.8 242 33.9
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 5.4e-17 92.4 212 34.0
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 7.1e-17 92.0 228 34.6
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 9.3e-17 91.7 254 31.9
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 9.3e-17 91.7 236 33.5
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 9.3e-17 91.7 248 32.3
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 1.2e-16 91.3 217 36.4
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 2.1e-16 90.5 237 31.6
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 3.5e-16 89.7 244 34.4
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 6.0e-16 89.0 226 31.4
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 7.9e-16 88.6 270 29.3
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 2.3e-15 87.0 247 31.2
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 3.0e-15 86.7 250 32.0
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 3.0e-15 86.7 233 31.8
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 5.1e-15 85.9 229 31.4
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 1.1e-14 84.7 252 29.4
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 7.4e-14 82.0 212 34.0
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 9.6e-14 81.6 266 29.3
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 3.7e-13 79.7 204 33.3
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 4.8e-13 79.3 231 32.5
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 8.1e-13 78.6 204 31.4
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 1.8e-12 77.4 254 29.1
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 2.4e-12 77.0 226 32.3
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 3.1e-12 76.6 230 30.9
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 1.2e-11 74.7 260 28.5
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 1.5e-11 74.3 244 29.9
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 1.5e-11 74.3 251 27.9
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 2.6e-11 73.6 372 25.8
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 7.6e-11 72.0 210 30.5
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 9.9e-11 71.6 235 29.4
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 1.3e-10 71.2 210 30.5
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 1.3e-10 71.2 210 30.5
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 4.9e-10 69.3 238 29.8
Zm00001eb180650 Zea mays HOM05D000120 ORTHO05D009410 2.1e-08 63.9 229 27.5
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 1.3e-07 61.2 113 36.3
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 2.3e-07 60.5 261 26.4
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 5.1e-07 59.3 263 27.0
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 1.5e-06 57.8 252 26.6
arahy.Tifrunner.gnm1.ann1.T5BQ73 Arachis hypogaea HOM05D000120 ORTHO05D009410 2.5e-06 57.0 80 38.8
CDE02G1861 Ceratophyllum demersum HOM05D055785 ORTHO05D043884 5.6e-06 55.8 103 35.0
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 5.6e-06 55.8 180 33.3
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 7.4e-06 55.5 233 26.2


User provided reference genes

Program Settings