Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 3.0e-279 964.5 493 100.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.2e-251 872.8 493 90.9
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 3.5e-251 871.3 493 91.1
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 5.6e-225 784.3 495 81.0
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 4.6e-219 764.6 526 76.0
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.3e-215 751.1 496 78.0
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.9e-186 655.2 474 69.8
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.2e-186 654.8 496 67.3
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 6.7e-186 654.4 481 68.8
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.3e-184 650.2 488 66.4
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.8e-184 649.0 473 68.1
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 4.8e-184 648.3 500 66.8
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 6.3e-184 647.9 490 68.0
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 4.1e-183 645.2 488 66.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 7.0e-183 644.4 491 67.4
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 7.7e-182 641.0 500 64.8
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.3e-181 640.2 439 72.0
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 2.2e-181 639.4 518 63.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-181 639.4 486 71.0
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.5e-180 636.7 493 65.3
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 3.2e-180 635.6 473 67.9
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 4.7e-179 631.7 485 66.6
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 6.1e-179 631.3 500 65.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 8.0e-179 630.9 497 65.0
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.0e-179 630.9 487 66.1
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.2e-178 628.2 497 64.8
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 6.7e-178 627.9 491 66.8
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 6.7e-178 627.9 459 68.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 8.8e-178 627.5 464 66.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 5.7e-177 624.8 472 67.6
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.7e-176 622.1 513 62.8
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 6.3e-176 621.3 466 66.1
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-175 620.2 494 64.8
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.8e-175 619.8 494 65.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.8e-175 619.8 494 65.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.1e-175 618.6 498 63.7
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.1e-175 618.6 492 64.8
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 5.3e-175 618.2 465 67.3
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 9.1e-175 617.5 511 62.8
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.0e-174 616.3 461 65.9
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 2.7e-174 615.9 481 64.7
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.0e-173 614.0 473 65.1
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.0e-173 614.0 455 68.6
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.7e-173 613.2 476 64.9
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.7e-173 613.2 494 64.6
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 6.5e-173 611.3 470 65.3
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 6.5e-173 611.3 467 65.7
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 8.5e-173 610.9 468 66.7
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.5e-172 609.4 476 65.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-172 609.4 494 64.0
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.6e-171 605.5 466 64.2
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 4.7e-171 605.1 460 64.3
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.8e-170 603.2 466 65.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.0e-170 602.4 483 63.4
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 4.0e-170 602.1 468 64.7
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 6.8e-170 601.3 477 64.4
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.2e-169 600.5 504 61.3
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 2.6e-169 599.4 470 64.5
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.6e-169 599.4 481 62.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 3.4e-169 599.0 488 62.1
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 7.5e-169 597.8 467 66.0
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 9.8e-169 597.4 481 63.0
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.3e-168 597.0 481 61.5
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.3e-168 597.0 498 61.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 4.8e-168 595.1 469 65.2
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 8.3e-168 594.3 483 60.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.1e-167 592.4 517 59.6
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 4.1e-167 592.0 476 63.7
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.1e-167 592.0 457 64.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 9.1e-167 590.9 458 65.7
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 9.1e-167 590.9 460 63.5
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 1.2e-166 590.5 473 64.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.6e-166 590.1 478 62.8
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.0e-166 589.7 491 61.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 4.5e-166 588.6 455 64.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.9e-166 588.2 493 61.9
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.3e-165 587.0 461 63.6
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.3e-165 587.0 461 63.6
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-165 586.6 474 62.4
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.3e-165 586.3 475 62.1
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.3e-165 586.3 475 62.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.8e-165 585.5 488 61.7
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 8.6e-165 584.3 478 60.9
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-164 583.2 423 67.8
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.2e-163 580.5 474 61.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.0e-162 577.4 524 58.6
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 4.5e-158 562.0 468 63.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.3e-154 549.7 480 59.4
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.3e-152 543.9 489 57.9
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 8.3e-152 541.2 534 56.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.2e-151 539.3 425 64.2
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.6e-150 537.0 425 63.3
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 3.3e-148 529.3 534 53.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-147 526.6 490 58.0
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.6e-145 519.6 484 57.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.1e-139 500.0 497 54.9
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 2.0e-137 493.4 470 54.9
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.9e-136 489.6 393 63.6
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 6.4e-136 488.4 373 63.3
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.0e-133 481.1 404 61.4
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 3.3e-132 476.1 485 54.6
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 3.5e-118 429.5 473 48.8
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.0e-117 427.9 460 49.8
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 9.0e-114 414.8 353 61.5
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.2e-99 365.5 231 75.3
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.4e-98 363.6 258 69.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-90 338.2 239 68.2
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-90 338.2 239 68.2
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.4e-85 321.2 268 61.9
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.5e-84 317.8 286 58.4
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 8.2e-83 312.0 220 67.7
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 8.2e-83 312.0 200 72.5
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 9.4e-79 298.5 255 60.0
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.0e-77 295.0 334 47.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 3.3e-76 290.0 328 47.6
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 2.8e-75 287.0 345 44.6
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-72 278.1 217 66.4
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 5.0e-72 276.2 201 68.7
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 5.5e-71 272.7 223 62.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.8e-67 260.4 183 67.2
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 8.2e-67 258.8 212 63.2
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-66 257.7 223 58.7
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.0e-65 254.2 178 70.2
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.3e-64 251.5 245 52.7
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 7.0e-58 229.2 156 67.3
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-54 218.0 172 70.3
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 2.7e-54 217.2 170 61.8
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.4e-50 204.1 163 60.1
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.0e-40 169.9 146 65.8
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 2.8e-38 164.1 519 26.0
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-30 138.7 100 67.0
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.6e-30 138.3 160 48.1
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-29 134.8 227 38.3
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 7.5e-28 129.4 510 28.8
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 9.5e-23 112.5 143 44.1
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 3.4e-20 104.0 55 89.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.8e-17 92.8 114 54.4
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-15 89.0 95 57.9
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.3e-15 87.0 265 30.2
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.2e-14 85.5 61 65.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 1.4e-13 82.0 76 57.9
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 5.2e-13 80.1 57 61.4
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 9.9e-12 75.9 154 34.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.1e-10 72.4 181 34.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 7.8e-09 66.2 69 58.0
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 3.3e-07 60.8 42 76.2


User provided reference genes

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