Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 5.3e-84 314.3 157 100.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.0e-79 300.1 157 96.8
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.3e-79 299.7 157 96.8
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.1e-69 265.8 155 85.8
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 4.5e-67 258.1 156 82.7
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.9e-65 252.7 156 80.8
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 4.3e-54 214.9 138 80.4
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.9e-42 175.6 134 66.4
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.8e-42 175.3 133 66.9
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 2.5e-41 172.6 138 65.2
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.3e-37 160.2 126 65.9
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 1.3e-34 150.2 131 60.3
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 4.2e-33 145.2 132 58.3
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 5.5e-33 144.8 148 53.4
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.7e-32 141.7 170 48.2
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 8.0e-32 141.0 156 46.2
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 8.0e-32 141.0 138 58.7
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 4.4e-30 135.2 155 45.8
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 9.7e-30 134.0 155 52.3
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.7e-29 133.3 143 47.6
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 1.7e-29 133.3 159 50.3
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 2.2e-29 132.9 128 60.2
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 2.2e-29 132.9 154 46.1
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 4.8e-29 131.7 152 48.0
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 6.3e-29 131.3 147 51.7
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.1e-28 130.6 141 47.5
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 7.0e-28 127.9 153 49.7
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 9.1e-28 127.5 145 49.0
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.2e-27 127.1 154 48.7
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 2.7e-27 125.9 159 48.4
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 4.5e-27 125.2 159 47.2
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.9e-27 124.8 148 46.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 1.0e-26 124.0 141 47.5
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.7e-26 123.2 153 47.7
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 2.2e-26 122.9 149 49.7
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.2e-26 122.9 142 50.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 2.2e-26 122.9 124 53.2
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.9e-26 122.5 148 45.9
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 5.0e-26 121.7 148 45.3
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 6.5e-26 121.3 148 45.9
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 6.5e-26 121.3 169 45.0
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 6.5e-26 121.3 125 53.6
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 6.5e-26 121.3 158 45.6
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 6.5e-26 121.3 154 46.8
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.1e-25 120.6 164 45.1
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.5e-25 120.2 144 47.9
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 2.5e-25 119.4 158 44.9
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 4.2e-25 118.6 155 43.9
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 4.2e-25 118.6 132 50.8
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 7.2e-25 117.9 122 53.3
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 7.2e-25 117.9 155 46.5
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 7.2e-25 117.9 166 44.6
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 9.4e-25 117.5 118 57.6
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 9.4e-25 117.5 124 53.2
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 9.4e-25 117.5 140 47.1
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.2e-24 117.1 147 47.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.2e-24 117.1 147 47.6
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.6e-24 116.7 143 44.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.6e-24 116.7 131 50.4
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.7e-24 115.9 149 44.3
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.7e-24 115.9 133 51.1
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.6e-24 115.5 166 42.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.7e-24 115.2 162 44.4
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 8.0e-24 114.4 142 47.2
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 8.0e-24 114.4 148 45.3
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.0e-23 114.0 138 47.8
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.4e-23 113.6 145 48.3
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 2.3e-23 112.8 161 43.5
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.0e-23 112.5 138 46.4
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 4.0e-23 112.1 150 42.7
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 4.0e-23 112.1 153 44.4
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 5.2e-23 111.7 146 43.8
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.8e-23 111.3 137 49.6
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.2e-22 110.5 148 40.5
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.5e-22 110.2 151 40.4
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.5e-22 110.2 143 49.0
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.6e-22 109.4 170 41.2
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 3.4e-22 109.0 154 42.9
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 3.4e-22 109.0 159 44.0
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 4.4e-22 108.6 147 44.2
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 4.4e-22 108.6 152 45.4
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 4.4e-22 108.6 123 50.4
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 9.8e-22 107.5 160 45.0
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.7e-21 106.7 126 47.6
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.7e-21 106.7 126 47.6
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 2.2e-21 106.3 102 57.8
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 2.2e-21 106.3 157 43.3
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 2.8e-21 105.9 156 43.6
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.8e-21 105.9 154 41.6
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.8e-21 105.1 146 41.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 4.8e-21 105.1 146 41.1
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 6.3e-21 104.8 119 48.7
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.1e-20 104.0 171 39.8
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.8e-20 103.2 132 42.4
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.4e-20 102.8 101 53.5
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 9.1e-20 100.9 126 46.0
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.6e-19 100.1 125 49.6
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 5.9e-19 98.2 141 41.8
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 5.9e-19 98.2 149 40.3
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 1.0e-18 97.4 153 41.8
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.0e-18 97.4 141 44.0
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.0e-18 97.4 156 42.3
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-18 97.1 141 41.1
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-18 96.7 141 41.8
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.3e-18 96.3 143 39.9
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.9e-18 95.9 140 41.4
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 3.8e-18 95.5 140 43.6
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 3.8e-18 95.5 140 43.6
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.8e-18 95.5 141 41.1
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.8e-18 95.5 141 41.1
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 3.8e-18 95.5 137 41.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.6e-18 94.4 140 40.0
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.9e-17 93.2 140 45.7
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.5e-17 92.8 153 41.8
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 3.3e-17 92.4 142 41.5
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 7.2e-17 91.3 141 41.8
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 7.2e-17 91.3 141 38.3
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.8e-16 89.4 143 38.5
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-16 89.4 143 38.5
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.8e-16 89.4 143 38.5
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.6e-16 89.0 139 40.3
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 4.7e-16 88.6 141 41.1
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 4.7e-16 88.6 141 41.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 4.7e-16 88.6 143 39.2
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.7e-16 88.6 141 41.8
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 6.1e-16 88.2 138 42.0
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.3e-15 86.3 141 37.6
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 4.0e-15 85.5 146 40.4
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.2e-14 84.0 105 45.7
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 3.4e-14 82.4 135 37.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 9.2e-12 74.3 94 51.1
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 5.9e-11 71.6 144 34.7
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.8e-11 71.2 57 63.2
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 2.3e-10 69.7 77 51.9
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.0e-10 68.6 62 51.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 8.6e-10 67.8 119 37.0
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 1.9e-09 66.6 125 32.8
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 3.3e-09 65.9 99 43.4
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.3e-09 65.9 152 34.9
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 4.3e-09 65.5 117 35.9
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 1.2e-08 63.9 139 32.4
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 1.2e-08 63.9 138 33.3
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 6.1e-08 61.6 123 35.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 2.3e-07 59.7 88 40.9
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.3e-07 59.7 89 42.7
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 5.2e-07 58.5 89 40.4
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 5.2e-07 58.5 88 42.0
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 6.8e-07 58.2 95 38.9
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 8.9e-07 57.8 163 31.9
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.5e-06 57.0 89 44.9
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.0e-06 56.6 123 35.0
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.6e-06 56.2 141 31.9
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 4.4e-06 55.5 93 33.3
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 5.8e-06 55.1 111 37.8


User provided reference genes

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