Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400044342 Solanum tuberosum HOM05D000007 ORTHO05D000039 1.1e-77 293.1 143 100.0
PGSC0003DMG400021672 Solanum tuberosum HOM05D000007 ORTHO05D000039 4.5e-34 148.3 271 37.6
PGSC0003DMG400021673 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.6e-29 132.5 259 35.1
PGSC0003DMG400010275 Solanum tuberosum HOM05D000007 ORTHO05D000039 9.8e-29 130.6 100 66.0
PGSC0003DMG402021671 Solanum tuberosum HOM05D000007 ORTHO05D000039 2.9e-28 129.0 90 73.3
Sopen10g004400 Solanum pennellii HOM05D000007 ORTHO05D000039 4.9e-28 128.3 254 36.2
Solyc10g008580.1 Solanum lycopersicum HOM05D000007 ORTHO05D000039 3.2e-27 125.6 254 35.4
CAN.G168.22 Capsicum annuum HOM05D000007 ORTHO05D000039 3.5e-26 122.1 91 67.0
Nitab4.5_0009868g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000039 6.6e-25 117.9 90 66.7
Nitab4.5_0000635g0180 Nicotiana tabacum HOM05D000007 ORTHO05D000039 7.3e-24 114.4 90 64.4
Peaxi162Scf00608g00048 Petunia axillaris HOM05D000007 ORTHO05D000039 4.7e-23 111.7 85 68.2
Peaxi162Scf00608g00323 Petunia axillaris HOM05D000007 ORTHO05D000039 1.1e-19 100.5 77 61.0
Lj8P116T38 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-15 86.3 136 36.8
Hma1.2p1_0178F.1_g078390 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 2.8e-15 85.9 83 48.2
Dinv23704 Davidia involucrata HOM05D000007 ORTHO05D000039 1.8e-14 83.2 89 51.7
CSS0017530 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 4.0e-14 82.0 77 50.6
Dinv15480 Davidia involucrata HOM05D000007 ORTHO05D000039 1.5e-13 80.1 80 51.2
Cc05_g06410 Coffea canephora HOM05D000007 ORTHO05D000039 3.4e-13 79.0 78 50.0
DCAR_019197 Daucus carota HOM05D000007 ORTHO05D000039 3.4e-13 79.0 78 50.0
Lj1P652T23 Lonicera japonica HOM05D000007 ORTHO05D000039 4.4e-13 78.6 84 45.2
Dinv19778 Davidia involucrata HOM05D000007 ORTHO05D000039 7.5e-13 77.8 75 49.3
Dinv05355 Davidia involucrata HOM05D000007 ORTHO05D000039 2.2e-12 76.3 85 47.1
MSTRG.6523 Avicennia marina HOM05D000007 ORTHO05D000039 3.7e-12 75.5 80 45.0
Actinidia07889 Actinidia chinensis HOM05D000007 ORTHO05D000039 6.4e-12 74.7 83 48.2
Migut.M00302 Erythranthe guttata HOM05D000007 ORTHO05D000039 6.4e-12 74.7 81 48.1
Hma1.2p1_1267F.1_g271540 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.4e-11 73.6 80 47.5
Hma1.2p1_2614F.1_g325400 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.4e-11 73.6 80 47.5
Dinv21276 Davidia involucrata HOM05D000007 ORTHO05D000039 3.2e-11 72.4 80 45.0
Lj1A656G15 Lonicera japonica HOM05D000007 ORTHO05D000039 4.1e-11 72.0 156 32.7
Lj1C654T3 Lonicera japonica HOM05D000007 ORTHO05D000039 5.4e-11 71.6 77 48.1
Lj1P660T10 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-10 69.7 86 43.0
TWI31G0212 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 2.1e-10 69.7 76 46.1
SalBow7G4817 Salvia bowleyana HOM05D000007 ORTHO05D000039 3.5e-10 68.9 78 46.2
Oeu011073.1 Olea europaea HOM05D000007 ORTHO05D000039 4.6e-10 68.6 78 39.7
Peaxi162Scf00152g00825 Petunia axillaris HOM05D000007 ORTHO05D000039 4.6e-10 68.6 79 41.8
Dinv19775 Davidia involucrata HOM05D000007 ORTHO05D000039 7.8e-10 67.8 80 42.5
Migut.M00309 Erythranthe guttata HOM05D000007 ORTHO05D000039 7.8e-10 67.8 78 43.6
Peaxi162Scf00608g00321 Petunia axillaris HOM05D000007 ORTHO05D000039 1.0e-09 67.4 88 46.6
Migut.H02131 Erythranthe guttata HOM05D000007 ORTHO05D000039 1.7e-09 66.6 76 50.0
Lj1C674T8 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-09 66.6 92 39.1
Lj1P653T16 Lonicera japonica HOM05D000007 ORTHO05D000039 1.7e-09 66.6 80 42.5
Manes.10G077179 Manihot esculenta HOM05D000007 ORTHO05D000039 2.3e-09 66.2 76 46.1
CSS0048184 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.0e-09 65.9 86 41.9
Migut.M00320 Erythranthe guttata HOM05D000007 ORTHO05D000039 3.0e-09 65.9 79 41.8
Nitab4.5_0003693g0050 Nicotiana tabacum HOM05D000007 ORTHO05D000039 3.0e-09 65.9 77 42.9
QL08p040425 Quercus lobata HOM05D000007 ORTHO05D000039 3.0e-09 65.9 85 41.2
Dinv12702 Davidia involucrata HOM05D000007 ORTHO05D000039 3.9e-09 65.5 83 41.0
Migut.M00317 Erythranthe guttata HOM05D000007 ORTHO05D000039 5.1e-09 65.1 79 41.8
Peaxi162Scf00469g00137 Petunia axillaris HOM05D000007 ORTHO05D000039 5.1e-09 65.1 162 27.8
Migut.M00318 Erythranthe guttata HOM05D000007 ORTHO05D000039 6.6e-09 64.7 79 40.5
Migut.M00319 Erythranthe guttata HOM05D000007 ORTHO05D000039 6.6e-09 64.7 78 42.3
Manes.07G011000 Manihot esculenta HOM05D000007 ORTHO05D000039 6.6e-09 64.7 78 38.5
Migut.M00314 Erythranthe guttata HOM05D000007 ORTHO05D000039 8.6e-09 64.3 78 42.3
Actinidia29354 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.1e-08 63.9 131 32.1
Lj1A662G33 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-08 63.9 57 56.1
Lj1P654T46 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-08 63.9 77 42.9
Lju1601C0T10 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-08 63.9 77 42.9
Rhsim12G0196600 Rhododendron simsii HOM05D000007 ORTHO05D000039 1.1e-08 63.9 83 43.4
QL04p019545 Quercus lobata HOM05D000007 ORTHO05D000039 1.5e-08 63.5 109 40.4
CAN.G464.45 Capsicum annuum HOM05D000007 ORTHO05D000039 1.9e-08 63.2 88 38.6
Migut.M00311 Erythranthe guttata HOM05D000007 ORTHO05D000039 1.9e-08 63.2 79 40.5
Lj1P593T30 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-08 63.2 96 42.7
Lj1P652T32 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-08 63.2 77 42.9
Lj1P665T26 Lonicera japonica HOM05D000007 ORTHO05D000039 1.9e-08 63.2 138 34.1
Manes.07G011100 Manihot esculenta HOM05D000007 ORTHO05D000039 1.9e-08 63.2 78 38.5
CAN.G1360.7 Capsicum annuum HOM05D000007 ORTHO05D000039 2.5e-08 62.8 78 38.5
Lj1P672T29 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-08 62.8 76 39.5
Lj4C425G8 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-08 62.8 84 45.2
CSS0036577 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 3.3e-08 62.4 77 44.2
Lj1A671T55 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-08 62.4 92 38.0
Lj1P662T13 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-08 62.4 60 53.3
Lj1P794T16 Lonicera japonica HOM05D000007 ORTHO05D000039 3.3e-08 62.4 80 41.2
vmacro13635 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.3e-08 62.4 81 45.7
Migut.M00313 Erythranthe guttata HOM05D000007 ORTHO05D000039 4.3e-08 62.0 79 39.2
Migut.M00305 Erythranthe guttata HOM05D000007 ORTHO05D000039 7.3e-08 61.2 78 44.9
Lj1P669T15 Lonicera japonica HOM05D000007 ORTHO05D000039 7.3e-08 61.2 76 38.2
Lj1P669T8 Lonicera japonica HOM05D000007 ORTHO05D000039 9.5e-08 60.8 76 38.2
Manes.07G068800 Manihot esculenta HOM05D000007 ORTHO05D000039 9.5e-08 60.8 84 38.1
Potri.001G262900 Populus trichocarpa HOM05D000007 ORTHO05D000039 9.5e-08 60.8 76 39.5
Migut.M00307 Erythranthe guttata HOM05D000007 ORTHO05D000039 1.2e-07 60.5 75 41.3
Lj1P591T21 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-07 60.5 67 50.7
Lj1P664T40 Lonicera japonica HOM05D000007 ORTHO05D000039 1.2e-07 60.5 91 40.7
Nitab4.5_0018863g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.2e-07 60.5 76 39.5
CAN.G464.42 Capsicum annuum HOM05D000007 ORTHO05D000039 1.6e-07 60.1 136 33.8
Lj1P673T32 Lonicera japonica HOM05D000007 ORTHO05D000039 1.6e-07 60.1 90 42.2
Migut.M00316 Erythranthe guttata HOM05D000007 ORTHO05D000039 2.1e-07 59.7 79 38.0
Lj1P665T33 Lonicera japonica HOM05D000007 ORTHO05D000039 2.1e-07 59.7 90 40.0
Nitab4.5_0000249g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.1e-07 59.7 76 39.5
QL08p040501 Quercus lobata HOM05D000007 ORTHO05D000039 2.1e-07 59.7 76 39.5
Rhsim02G0167900 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.1e-07 59.7 88 36.4
Rhsim04G0065500 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.1e-07 59.7 80 38.8
CSS0044141 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 2.8e-07 59.3 86 43.0
CAN.G1036.10 Capsicum annuum HOM05D000007 ORTHO05D000039 2.8e-07 59.3 76 39.5
Lj1C654T13 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-07 59.3 72 43.1
Lj1P655T32 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-07 59.3 63 52.4
Lj1P663T62 Lonicera japonica HOM05D000007 ORTHO05D000039 2.8e-07 59.3 82 39.0
QL04p019108 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-07 59.3 85 43.5
QL04p019213 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-07 59.3 83 39.8
QL08p040450 Quercus lobata HOM05D000007 ORTHO05D000039 2.8e-07 59.3 76 42.1
Lj1C599G12 Lonicera japonica HOM05D000007 ORTHO05D000039 3.6e-07 58.9 104 40.4
Sopen07g024200 Solanum pennellii HOM05D000007 ORTHO05D000039 3.6e-07 58.9 76 39.5
vmacro08441 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.6e-07 58.9 136 33.1
Migut.M00308 Erythranthe guttata HOM05D000007 ORTHO05D000039 4.7e-07 58.5 79 38.0
Lj1P592T25 Lonicera japonica HOM05D000007 ORTHO05D000039 4.7e-07 58.5 76 39.5
QL04p019437 Quercus lobata HOM05D000007 ORTHO05D000039 4.7e-07 58.5 83 38.6
vmacro12403 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 4.7e-07 58.5 122 32.0
Lj1C655T5 Lonicera japonica HOM05D000007 ORTHO05D000039 6.2e-07 58.2 132 28.8
Lj1P670T34 Lonicera japonica HOM05D000007 ORTHO05D000039 6.2e-07 58.2 89 41.6
QL08p040393 Quercus lobata HOM05D000007 ORTHO05D000039 6.2e-07 58.2 76 38.2
SGA_v2.0_scaffold154G37106 Striga asiatica HOM05D000007 ORTHO05D000039 6.2e-07 58.2 108 32.4
vmacro13634 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 6.2e-07 58.2 81 42.0
Rhsim04G0064400 Rhododendron simsii HOM05D000007 ORTHO05D000039 8.1e-07 57.8 84 40.5
Lj1C577T0 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-06 57.4 83 34.9
Lj1C592T5 Lonicera japonica HOM05D000007 ORTHO05D000039 1.1e-06 57.4 76 38.2
QL04p019171 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-06 57.4 86 40.7
QL04p019188 Quercus lobata HOM05D000007 ORTHO05D000039 1.1e-06 57.4 87 40.2
MELO3C014363.2 Cucumis melo HOM05D000007 ORTHO05D000039 1.4e-06 57.0 74 37.8
HanXRQChr17g0542091 Helianthus annuus HOM05D000007 ORTHO05D000039 1.4e-06 57.0 76 40.8
Hma1.2p1_0036F.1_g023640 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.4e-06 57.0 81 37.0
Lj1P674T76 Lonicera japonica HOM05D000007 ORTHO05D000039 1.4e-06 57.0 82 34.1
Nitab4.5_0001774g0020 Nicotiana tabacum HOM05D000007 ORTHO05D000521 1.4e-06 57.0 76 36.8
Rhsim06G0124400 Rhododendron simsii HOM05D001399 ORTHO05D000039 1.4e-06 57.0 78 42.3
Actinidia11170 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.8e-06 56.6 85 41.2
ECA238G2240 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.8e-06 56.6 79 40.5
Lj1C654T14 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-06 56.6 78 41.0
Lj1C674T7 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-06 56.6 88 40.9
Lju1601A0G41 Lonicera japonica HOM05D000007 ORTHO05D000039 1.8e-06 56.6 78 41.0
Peaxi162Scf00776g00029 Petunia axillaris HOM05D000007 ORTHO05D000521 1.8e-06 56.6 76 36.8
vmacro12417 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 1.8e-06 56.6 77 40.3
vmacro13637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 1.8e-06 56.6 76 43.4
Cc05_g08680 Coffea canephora HOM05D000007 ORTHO05D000039 2.4e-06 56.2 76 38.2
QL04p019507 Quercus lobata HOM05D000007 ORTHO05D000039 2.4e-06 56.2 79 41.8
Cc05_g06390 Coffea canephora HOM05D000007 ORTHO05D000039 3.1e-06 55.8 89 43.8
Migut.M00304 Erythranthe guttata HOM05D000007 ORTHO05D000039 3.1e-06 55.8 89 40.4
Lj1P576T9 Lonicera japonica HOM05D000007 ORTHO05D000039 3.1e-06 55.8 83 36.1
Lju1074C2T0 Lonicera japonica HOM05D000007 ORTHO05D000039 3.1e-06 55.8 89 34.8
Rhsim04G0063900 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.1e-06 55.8 74 39.2
Lj1P565T8 Lonicera japonica HOM05D000007 ORTHO05D000039 4.0e-06 55.5 83 39.8
Rhsim04G0063800 Rhododendron simsii HOM05D000007 ORTHO05D000039 4.0e-06 55.5 74 39.2
vmacro12404 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 4.0e-06 55.5 81 38.3
ClCG09G014060 Citrullus lanatus HOM05D000007 ORTHO05D000039 5.2e-06 55.1 74 37.8
Cc05_g08700 Coffea canephora HOM05D000007 ORTHO05D000039 5.2e-06 55.1 74 36.5
Gohir.A13G144400 Gossypium hirsutum HOM05D000007 ORTHO05D000039 5.2e-06 55.1 79 41.8
Lj1A671T53 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-06 55.1 88 40.9
Lj1P670T24 Lonicera japonica HOM05D000007 ORTHO05D000039 5.2e-06 55.1 92 41.3
QL04p019425 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 79 36.7
QL04p019522 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 76 40.8
QL08p040468 Quercus lobata HOM05D000007 ORTHO05D000039 5.2e-06 55.1 85 35.3
Rhsim04G0064100 Rhododendron simsii HOM05D000804 ORTHO05D000039 5.2e-06 55.1 84 36.9
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 6.8e-06 54.7 76 39.5
CSS0019634 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 6.8e-06 54.7 83 39.8
CSS0034858 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 6.8e-06 54.7 83 39.8
CSS0047811 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 6.8e-06 54.7 83 39.8
Gorai.013G166900 Gossypium raimondii HOM05D000007 ORTHO05D000039 6.8e-06 54.7 79 43.0
Lsat_1_v5_gn_3_39620 Lactuca sativa HOM05D000007 ORTHO05D000039 6.8e-06 54.7 76 38.2
Lj1P673T22 Lonicera japonica HOM05D000007 ORTHO05D000039 6.8e-06 54.7 92 41.3
Sed0011449 Sechium edule HOM05D000007 ORTHO05D000039 6.8e-06 54.7 74 37.8
Ciclev10030186m.g Citrus clementina HOM05D000007 ORTHO05D000039 8.9e-06 54.3 81 38.3
Lj1C596T1 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-06 54.3 138 29.0
Lj1C671T2 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-06 54.3 91 39.6
Lj1C674T3 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-06 54.3 87 35.6
Lj1P671T17 Lonicera japonica HOM05D000007 ORTHO05D000039 8.9e-06 54.3 87 35.6
SGA_v2.0_scaffold41G15835 Striga asiatica HOM05D000007 ORTHO05D000039 8.9e-06 54.3 117 29.1


User provided reference genes

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