Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400043823 Solanum tuberosum HOM05D014983 ORTHO05D014445 3.1e-51 204.9 107 100.0
PGSC0003DMG400034844 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.5e-50 202.6 107 99.1
PGSC0003DMG400041979 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.5e-50 202.6 107 99.1
PGSC0003DMG400046316 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.5e-50 202.6 107 99.1
PGSC0003DMG400043095 Solanum tuberosum HOM05D014983 ORTHO05D014445 5.8e-50 200.7 107 98.1
PGSC0003DMG400040405 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.4e-48 196.1 107 95.3
PGSC0003DMG400035227 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.9e-48 195.7 107 96.3
PGSC0003DMG400035826 Solanum tuberosum HOM05D014983 ORTHO05D014445 2.4e-48 195.3 107 96.3
PGSC0003DMG400042121 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.2e-47 193.0 107 95.3
PGSC0003DMG400041171 Solanum tuberosum HOM05D014983 ORTHO05D014445 1.1e-45 186.4 107 91.6
Nitab4.5_0012488g0010 Nicotiana tabacum HOM05D000344 ORTHO05D000934 2.3e-30 135.6 108 72.2
Nitab4.5_0000131g0390 Nicotiana tabacum HOM05D000344 ORTHO05D000934 2.4e-27 125.6 87 81.6
CAN.G475.43 Capsicum annuum HOM05D000344 ORTHO05D000934 1.2e-26 123.2 97 74.2
Sopen00g005850 Solanum pennellii HOM05D000344 ORTHO05D000934 1.4e-24 116.3 67 92.5
Sopen04g029990 Solanum pennellii HOM05D000344 ORTHO05D014445 1.4e-24 116.3 67 92.5
Cc10_g15790 Coffea canephora HOM05D000344 ORTHO05D000934 1.1e-16 90.1 79 62.0
Dinv44850 Davidia involucrata HOM05D000344 ORTHO05D000934 1.5e-13 79.7 66 69.7
Dinv42624 Davidia involucrata HOM05D000344 ORTHO05D000934 1.9e-13 79.3 66 66.7
Actinidia19637 Actinidia chinensis HOM05D000344 ORTHO05D000934 6.2e-12 74.3 69 63.8
Actinidia29620 Actinidia chinensis HOM05D000344 ORTHO05D000934 1.1e-11 73.6 69 63.8
Hma1.2p1_0125F.1_g058980 Hydrangea macrophylla HOM05D000344 ORTHO05D000934 1.1e-11 73.6 66 63.6
TAR376G0948 Trochodendron aralioides HOM05D000344 ORTHO05D000934 1.1e-11 73.6 67 65.7
CANSAT25G0490 Cannabis sativa HOM05D000344 ORTHO05D000934 1.4e-11 73.2 68 58.8
vmacro21330 Vaccinium macrocarpon HOM05D000963 ORTHO05D014445 3.1e-11 72.0 63 63.5
Duzib093G0972 Durio zibethinus HOM05D000344 ORTHO05D000934 6.9e-11 70.9 67 59.7
Manes.02G145700 Manihot esculenta HOM05D000344 ORTHO05D000934 9.0e-11 70.5 67 62.7
Duzib041G0213 Durio zibethinus HOM05D000344 ORTHO05D000934 1.2e-10 70.1 67 58.2
Oeu049763.1 Olea europaea HOM05D000344 ORTHO05D000934 1.5e-10 69.7 104 41.3
Potri.005G156900 Populus trichocarpa HOM05D000344 ORTHO05D000934 2.0e-10 69.3 67 59.7
Rhsim06G0072600 Rhododendron simsii HOM05D000344 ORTHO05D000934 2.6e-10 68.9 63 58.7
EL10Ac1g01066 Beta vulgaris HOM05D000344 ORTHO05D000934 4.5e-10 68.2 68 60.3
COL.COLO4_35217 Corchorus olitorius HOM05D000344 ORTHO05D000934 4.5e-10 68.2 67 61.2
Glyma.04G091700 Glycine max HOM05D000344 ORTHO05D000934 4.5e-10 68.2 67 61.2
Cpa.g.sc21.3 Carica papaya HOM05D000344 ORTHO05D000934 5.8e-10 67.8 77 55.8
Gohir.D06G032100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 5.8e-10 67.8 67 58.2
Oeu061180.3 Olea europaea HOM05D000344 ORTHO05D000934 5.8e-10 67.8 63 55.6
Gohir.A06G032616 Gossypium hirsutum HOM05D000344 ORTHO05D000934 7.6e-10 67.4 67 58.2
Gohir.D02G085800 Gossypium hirsutum HOM05D000344 ORTHO05D000934 7.6e-10 67.4 67 59.7
Gorai.005G096600 Gossypium raimondii HOM05D000344 ORTHO05D000934 7.6e-10 67.4 67 59.7
Gorai.010G035400 Gossypium raimondii HOM05D000344 ORTHO05D000934 7.6e-10 67.4 67 58.2
Hund16862 Selenicereus undatus HOM05D000344 ORTHO05D000934 1.0e-09 67.0 66 60.6
Gohir.A02G078600 Gossypium hirsutum HOM05D000344 ORTHO05D000934 1.3e-09 66.6 67 59.7
Sabra02G0082300 Salix brachista HOM05D000344 ORTHO05D000934 1.3e-09 66.6 85 50.6
Atru.chr13.1030 Acer truncatum HOM05D000344 ORTHO05D000934 1.7e-09 66.2 85 51.8
Actinidia10378 Actinidia chinensis HOM05D000344 ORTHO05D000934 1.7e-09 66.2 63 60.3
MD08G1196200 Malus domestica HOM05D000344 ORTHO05D000934 2.2e-09 65.9 68 58.8
Actinidia30822 Actinidia chinensis HOM05D000344 ORTHO05D000934 2.9e-09 65.5 63 63.5
Nn1g05539 Nelumbo nucifera HOM05D000344 ORTHO05D000934 2.9e-09 65.5 67 53.7
Potri.002G104800 Populus trichocarpa HOM05D000344 ORTHO05D000934 2.9e-09 65.5 66 59.1
Sabra05G0120400 Salix brachista HOM05D000344 ORTHO05D000934 2.9e-09 65.5 67 58.2
Ah.05g170780 Amaranthus hybridus HOM05D000344 ORTHO05D000934 3.8e-09 65.1 78 50.0
CSS0024089 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 3.8e-09 65.1 63 61.9
Ca_15995_v3 Cicer arietinum L. HOM05D000344 ORTHO05D000934 3.8e-09 65.1 78 51.3
CiPaw.07G166700 Carya illinoinensis HOM05D000344 ORTHO05D000934 6.5e-09 64.3 62 54.8
Ciclev10000079m.g Citrus clementina HOM05D000344 ORTHO05D000934 6.5e-09 64.3 68 57.4
Thecc.08G069400 Theobroma cacao HOM05D000344 ORTHO05D000934 6.5e-09 64.3 67 56.7
TPR.G26069 Trifolium pratense HOM05D000344 ORTHO05D000934 6.5e-09 64.3 63 55.6
TAR625G1132 Trochodendron aralioides HOM05D000344 ORTHO05D000934 6.5e-09 64.3 67 55.2
GSVIVG01009158001 Vitis vinifera HOM05D000344 ORTHO05D000934 6.5e-09 64.3 63 57.1
Duzib116G0675 Durio zibethinus HOM05D000344 ORTHO05D000934 8.4e-09 63.9 67 56.7
Lsat_1_v5_gn_9_76000 Lactuca sativa HOM05D000344 ORTHO05D000934 8.4e-09 63.9 66 53.0
Manes.18G059900 Manihot esculenta HOM05D000344 ORTHO05D000934 1.1e-08 63.5 78 55.1
ClCG08G011730 Citrullus lanatus HOM05D000344 ORTHO05D000934 1.4e-08 63.2 68 57.4
Medtr5g066000 Medicago truncatula HOM05D000344 ORTHO05D000934 1.4e-08 63.2 68 51.5
MELO3C011097.2 Cucumis melo HOM05D000344 ORTHO05D000934 2.5e-08 62.4 63 60.3
Lj4C735T7 Lonicera japonica HOM05D000344 ORTHO05D000934 2.5e-08 62.4 82 48.8
Lalb_Chr08g0242461 Lupinus albus HOM05D000344 ORTHO05D000934 2.5e-08 62.4 68 50.0
TPR.G16004 Trifolium pratense HOM05D000344 ORTHO05D000934 2.5e-08 62.4 68 52.9
LjContig00408g0026735 Lotus japonicus HOM05D000344 ORTHO05D000934 3.2e-08 62.0 67 52.2
Hund27014 Selenicereus undatus HOM05D000344 ORTHO05D000934 3.2e-08 62.0 70 55.7
Aqoxy5G01314 Aquilegia oxysepala HOM05D000344 ORTHO05D000934 4.2e-08 61.6 70 44.3
AUR62027875 Chenopodium quinoa HOM05D000344 ORTHO05D000934 4.2e-08 61.6 72 56.9
Lj1g0002541 Lotus japonicus HOM05D000344 ORTHO05D000934 4.2e-08 61.6 67 56.7
TWI56G1435 Tripterygium wilfordii HOM05D000344 ORTHO05D000934 4.2e-08 61.6 67 55.2
Cfa013689 Carpinus fangiana HOM05D000344 ORTHO05D000934 7.1e-08 60.8 60 56.7
Prupe.1G530100 Prunus persica HOM05D000344 ORTHO05D000934 7.1e-08 60.8 67 56.7
BcaNung04965 Brassica carinata HOM05D000344 ORTHO05D000934 9.3e-08 60.5 68 52.9
CSS0017298 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 9.3e-08 60.5 69 56.5
CSS0032567 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 9.3e-08 60.5 69 56.5
MD15G1384000 Malus domestica HOM05D000344 ORTHO05D000934 9.3e-08 60.5 67 52.2
Medtr3g100480 Medicago truncatula HOM05D000344 ORTHO05D000934 9.3e-08 60.5 67 52.2
Aa31LG4G9660 Aethionema arabicum HOM05D000344 ORTHO05D000934 1.2e-07 60.1 77 49.4
Glyma.06G093500 Glycine max HOM05D000344 ORTHO05D000934 1.6e-07 59.7 67 50.7
BcaC09g50853 Brassica carinata HOM05D000344 ORTHO05D000934 2.1e-07 59.3 68 48.5
A01p15920 Brassica napus HOM05D000344 ORTHO05D000934 2.1e-07 59.3 68 48.5
C01p19890 Brassica napus HOM05D000344 ORTHO05D000934 2.1e-07 59.3 68 48.5
BolC1t01917H Brassica oleracea HOM05D000344 ORTHO05D000934 2.1e-07 59.3 68 48.5
Ca_05424_v3 Cicer arietinum L. HOM05D000344 ORTHO05D000934 2.1e-07 59.3 63 54.0
Haze_22330 Corylus avellana HOM05D000344 ORTHO05D000934 2.1e-07 59.3 60 55.0
DCAR_012860 Daucus carota HOM05D000344 ORTHO05D000934 2.1e-07 59.3 67 53.7
Lalb_Chr04g0252901 Lupinus albus HOM05D000344 ORTHO05D000934 2.1e-07 59.3 67 56.7
Psat2g066240 Pisum sativum HOM05D000344 ORTHO05D000934 2.1e-07 59.3 69 56.5
TWI12G0547 Tripterygium wilfordii HOM05D000344 ORTHO05D000934 2.1e-07 59.3 67 55.2
TAR628G1265 Trochodendron aralioides HOM05D000344 ORTHO05D000934 2.1e-07 59.3 67 55.2
arahy.Tifrunner.gnm1.ann1.14BCP7 Arachis hypogaea HOM05D000344 ORTHO05D014445 2.7e-07 58.9 66 50.0
arahy.Tifrunner.gnm1.ann1.V86AIC Arachis hypogaea HOM05D000344 ORTHO05D000934 2.7e-07 58.9 66 50.0
BraA01t01526Z Brassica rapa HOM05D000344 ORTHO05D000934 2.7e-07 58.9 68 48.5
QL09p017563 Quercus lobata HOM05D000344 ORTHO05D000934 2.7e-07 58.9 61 55.7
CiPaw.08G054800 Carya illinoinensis HOM05D000344 ORTHO05D000934 3.5e-07 58.5 73 52.1
vmacro04658 Vaccinium macrocarpon HOM05D000344 ORTHO05D000934 3.5e-07 58.5 66 51.5
BcaC06g32875 Brassica carinata HOM05D000344 ORTHO05D000934 4.6e-07 58.2 78 50.0
CsaV3_2G030350 Cucumis sativus L. HOM05D000344 ORTHO05D000934 4.6e-07 58.2 63 55.6
Hund11611 Selenicereus undatus HOM05D006468 ORTHO05D006908 4.6e-07 58.2 67 58.2
THA.LOC104799803 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 4.6e-07 58.2 77 48.1
Eucgr.F00414 Eucalyptus grandis HOM05D000344 ORTHO05D000934 6.0e-07 57.8 77 49.4
AUR62019038 Chenopodium quinoa HOM05D000344 ORTHO05D000934 7.9e-07 57.4 72 55.6
Sed0001827 Sechium edule HOM05D000344 ORTHO05D000934 7.9e-07 57.4 66 59.1
arahy.Tifrunner.gnm1.ann1.YU5GZ6 Arachis hypogaea HOM05D000344 ORTHO05D000934 1.0e-06 57.0 68 51.5
Lalb_Chr17g0344471 Lupinus albus HOM05D000344 ORTHO05D000934 1.0e-06 57.0 66 54.5
Psat5g046280 Pisum sativum HOM05D000344 ORTHO05D000934 1.0e-06 57.0 62 56.5
arahy.Tifrunner.gnm1.ann1.6IR4P8 Arachis hypogaea HOM05D000344 ORTHO05D000934 1.3e-06 56.6 68 51.5
ClCG11G014530 Citrullus lanatus HOM05D000344 ORTHO05D000934 1.3e-06 56.6 66 51.5
Nn5g29911 Nelumbo nucifera HOM05D000344 ORTHO05D000934 2.3e-06 55.8 46 56.5
Lalb_Chr10g0102701 Lupinus albus HOM05D000344 ORTHO05D000934 3.0e-06 55.5 66 53.0
PGR031G2385 Punica granatum HOM05D000344 ORTHO05D000934 3.0e-06 55.5 62 54.8
Sed0015689 Sechium edule HOM05D000344 ORTHO05D000934 3.0e-06 55.5 62 54.8
Sc01g0001120 Simmondsia chinensis HOM05D000344 ORTHO05D000934 3.0e-06 55.5 68 50.0
THA.LOC104803423 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 3.0e-06 55.5 66 51.5
Aqoxy6G01449 Aquilegia oxysepala HOM05D000344 ORTHO05D000934 3.9e-06 55.1 66 48.5
PGR042G3569 Punica granatum HOM05D000344 ORTHO05D000934 3.9e-06 55.1 62 53.2
CsaV3_3G047940 Cucumis sativus L. HOM05D000344 ORTHO05D000934 5.1e-06 54.7 66 48.5
Migut.N02870 Erythranthe guttata HOM05D000344 ORTHO05D000934 5.1e-06 54.7 66 53.0
HanXRQChr04g0111421 Helianthus annuus HOM05D000344 ORTHO05D000934 5.1e-06 54.7 50 54.0
Sp7g22560 Schrenkiella parvula HOM05D000344 ORTHO05D000934 5.1e-06 54.7 66 50.0
Sed0005755 Sechium edule HOM05D000344 ORTHO05D000934 5.1e-06 54.7 78 43.6
CARHR231960 Cardamine hirsuta HOM05D000344 ORTHO05D000934 6.7e-06 54.3 66 47.0
RcHm_v2.0_Chr7g0236881 Rosa chinensis HOM05D000344 ORTHO05D000934 6.7e-06 54.3 70 54.3


User provided reference genes

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