Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400043107 Solanum tuberosum HOM05D007167 ORTHO05D000922 1.1e-92 343.2 168 100.0
PGSC0003DMG400034963 Solanum tuberosum HOM05D007167 ORTHO05D000922 4.5e-41 171.8 121 71.9
PGSC0003DMG400039430 Solanum tuberosum HOM05D007167 ORTHO05D000922 4.5e-41 171.8 121 71.9
Sopen00g007010 Solanum pennellii HOM05D007167 ORTHO05D000922 3.2e-39 165.6 95 82.1
PGSC0003DMG400004552 Solanum tuberosum HOM05D007167 ORTHO05D000922 2.7e-38 162.5 79 96.2
Sc14g0003770 Simmondsia chinensis HOM05D007167 ORTHO05D001070 4.5e-33 145.2 106 68.9
Sc14g0003870 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.5e-33 145.2 106 68.9
Sc14g0003940 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.5e-33 145.2 106 68.9
Sc14g0004250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.5e-33 145.2 106 68.9
Sc14g0004350 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0000050 Simmondsia chinensis HOM05D007167 ORTHO05D000922 4.5e-33 145.2 106 68.9
ScUNg0000170 Simmondsia chinensis HOM05D007167 ORTHO05D000922 4.5e-33 145.2 106 68.9
ScUNg0000250 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.5e-33 145.2 106 68.9
ScUNg0000310 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0000440 Simmondsia chinensis HOM05D013320 ORTHO05D000922 4.5e-33 145.2 106 68.9
ScUNg0000510 Simmondsia chinensis HOM05D007167 ORTHO05D000922 4.5e-33 145.2 106 68.9
ScUNg0000660 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0000690 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0000730 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0001240 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0001280 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0001330 Simmondsia chinensis HOM05D007167 ORTHO05D013628 4.5e-33 145.2 106 68.9
ScUNg0001370 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0001420 Simmondsia chinensis HOM05D007167 ORTHO05D001679 4.5e-33 145.2 106 68.9
ScUNg0001100 Simmondsia chinensis HOM05D007167 ORTHO05D000922 7.7e-33 144.4 92 76.1
Psat0s1917g0080 Pisum sativum HOM05D001828 ORTHO05D001745 6.1e-30 134.8 92 73.9
BNapus_Darmor_BZH_scaffold_107p00080 Brassica napus HOM05D007167 ORTHO05D000922 2.7e-22 109.4 85 68.2
Sc21g0003540 Simmondsia chinensis HOM05D007167 ORTHO05D000922 8.0e-22 107.8 95 58.9
EL10Ac5g11395 Beta vulgaris HOM05D007167 ORTHO05D000922 1.4e-21 107.1 105 53.3
A06p25100 Brassica napus HOM05D007167 ORTHO05D000922 3.4e-20 102.4 92 59.8
ScUNg0000950 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.7e-19 100.1 91 60.4
Lj6g0023052 Lotus japonicus HOM05D005014 ORTHO05D003704 1.4e-18 97.1 84 58.3
A01p26880 Brassica napus HOM05D000920 ORTHO05D010211 2.9e-16 89.4 148 41.9
A06p25010 Brassica napus HOM05D007167 ORTHO05D000922 2.9e-16 89.4 92 55.4
A06p26520 Brassica napus HOM05D007167 ORTHO05D000922 2.9e-16 89.4 72 68.1
ScUNg0000780 Simmondsia chinensis HOM05D007167 ORTHO05D013628 2.5e-15 86.3 72 62.5
BNapus_Darmor_BZH_scaffold_107p00200 Brassica napus HOM05D007167 ORTHO05D000922 2.1e-14 83.2 71 59.2
EL10Ac4g08190 Beta vulgaris HOM05D007167 ORTHO05D000922 2.8e-14 82.8 50 80.0
Cfa006170 Carpinus fangiana HOM05D007167 ORTHO05D009486 4.0e-13 79.0 50 68.0
C07p12460 Brassica napus HOM05D000920 ORTHO05D010211 2.6e-12 76.3 135 40.0
A06p25660 Brassica napus HOM05D000920 ORTHO05D010211 5.7e-12 75.1 117 43.6
BNapus_Darmor_BZH_scaffold_107p00090 Brassica napus HOM05D000920 ORTHO05D010211 9.8e-12 74.3 135 40.0
A09p30830 Brassica napus HOM05D000920 ORTHO05D010211 1.3e-11 73.9 135 40.0
A05p22730 Brassica napus HOM05D001319 ORTHO05D000922 4.1e-10 68.9 41 75.6
A05p22740 Brassica napus HOM05D001319 ORTHO05D000922 4.1e-10 68.9 41 75.6
Sc07g0005240 Simmondsia chinensis HOM05D007167 ORTHO05D000922 1.2e-09 67.4 59 54.2
BcaC06g36787 Brassica carinata HOM05D000920 ORTHO05D003704 1.6e-09 67.0 123 44.7
A06p25480 Brassica napus HOM05D001319 ORTHO05D000922 2.7e-09 66.2 37 81.1
unitig_885.g34271 Utricularia gibba HOM05D007167 ORTHO05D000922 7.8e-09 64.7 95 45.3
Sopen00g004060 Solanum pennellii HOM05D001828 ORTHO05D001745 1.7e-08 63.5 38 78.9
unitig_813.g34371 Utricularia gibba HOM05D007167 ORTHO05D000922 3.0e-08 62.8 49 63.3
Migut.A01243 Erythranthe guttata HOM05D001319 ORTHO05D000922 3.9e-08 62.4 35 85.7
Migut.O00649 Erythranthe guttata HOM05D001319 ORTHO05D000922 3.9e-08 62.4 35 85.7
Psat3g188760 Pisum sativum HOM05D000920 ORTHO05D010211 5.0e-08 62.0 88 45.5
A06p24650 Brassica napus HOM05D000920 ORTHO05D003704 6.6e-08 61.6 86 45.3
CiPaw.15G100800 Carya illinoinensis HOM05D001319 ORTHO05D000922 3.3e-07 59.3 47 61.7
CiPaw.15G104600 Carya illinoinensis HOM05D001319 ORTHO05D000922 4.3e-07 58.9 34 82.4
CiPaw.15G105500 Carya illinoinensis HOM05D001319 ORTHO05D000922 4.3e-07 58.9 34 82.4
Cre14.g634322 Chlamydomonas reinhardtii HOM05D007167 ORTHO05D000922 5.6e-07 58.5 49 63.3
Cre14.g634365 Chlamydomonas reinhardtii HOM05D007167 ORTHO05D000922 5.6e-07 58.5 49 63.3
Potri.008G224111 Populus trichocarpa HOM05D007167 ORTHO05D000922 5.6e-07 58.5 34 85.3
Potri.008G224701 Populus trichocarpa HOM05D007167 ORTHO05D000922 5.6e-07 58.5 34 85.3
Migut.A01195 Erythranthe guttata HOM05D001319 ORTHO05D000922 7.3e-07 58.2 43 67.4
BcaB04g16894 Brassica carinata HOM05D001319 ORTHO05D000922 1.2e-06 57.4 34 82.4
Carub.0002s0966 Capsella rubella HOM05D001319 ORTHO05D000922 1.2e-06 57.4 34 82.4
Carub.0026s0006 Capsella rubella HOM05D001319 ORTHO05D000922 1.2e-06 57.4 34 82.4
Thhalv10028274m.g Eutrema salsugineum HOM05D001319 ORTHO05D000922 1.2e-06 57.4 34 82.4
Thhalv10028342m.g Eutrema salsugineum HOM05D001319 ORTHO05D000922 1.2e-06 57.4 34 82.4
arahy.Tifrunner.gnm1.ann1.62DUUZ Arachis hypogaea HOM05D003608 ORTHO05D000917 2.1e-06 56.6 41 63.4
Glyma.13G012200 Glycine max HOM05D007167 ORTHO05D000922 2.1e-06 56.6 34 82.4
Glyma.U007802 Glycine max HOM05D001319 ORTHO05D000922 2.1e-06 56.6 34 82.4
Lj2g0014759 Lotus japonicus HOM05D001319 ORTHO05D000922 2.1e-06 56.6 34 82.4
Lj6g0022573 Lotus japonicus HOM05D001319 ORTHO05D000922 2.1e-06 56.6 34 82.4
LjContig00006g0020595 Lotus japonicus HOM05D001319 ORTHO05D000922 2.1e-06 56.6 34 82.4
LjContig00488g0020088 Lotus japonicus HOM05D001319 ORTHO05D000922 2.1e-06 56.6 34 82.4
BcaC06g35655 Brassica carinata HOM05D001319 ORTHO05D000922 2.8e-06 56.2 34 79.4
arahy.Tifrunner.gnm1.ann1.J69F6A Arachis hypogaea HOM05D003608 ORTHO05D000917 6.2e-06 55.1 41 61.0
Manes.S008829 Manihot esculenta HOM05D007167 ORTHO05D000922 6.2e-06 55.1 34 76.5
Manes.S024416 Manihot esculenta HOM05D001319 ORTHO05D000922 6.2e-06 55.1 34 76.5
Manes.S030952 Manihot esculenta HOM05D001319 ORTHO05D000922 6.2e-06 55.1 34 76.5
Manes.S055516 Manihot esculenta HOM05D007167 ORTHO05D000922 6.2e-06 55.1 34 76.5
Manes.S055616 Manihot esculenta HOM05D001319 ORTHO05D000922 6.2e-06 55.1 34 76.5
Manes.S056016 Manihot esculenta HOM05D007167 ORTHO05D000922 6.2e-06 55.1 34 76.5
BcaNung07382 Brassica carinata HOM05D000920 ORTHO05D000922 8.0e-06 54.7 29 93.1


User provided reference genes

Program Settings