Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.1e-69 265.0 131 100.0
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.8e-60 234.2 129 89.1
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.2e-59 232.3 129 88.4
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 3.0e-48 195.3 123 82.1
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.2e-46 189.9 120 79.2
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.2e-46 189.9 150 67.3
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.6e-46 189.5 151 66.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.8e-46 188.7 149 67.1
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 4.0e-37 158.3 112 68.8
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 5.3e-37 157.9 125 67.2
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 6.9e-37 157.5 118 65.3
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 9.0e-37 157.1 127 65.4
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.5e-36 156.4 127 63.8
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.5e-36 156.4 127 63.8
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.5e-36 156.4 127 63.8
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.0e-36 156.0 134 61.2
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 4.4e-36 154.8 125 64.8
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 7.6e-36 154.1 120 63.3
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 9.9e-36 153.7 123 62.6
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 9.9e-36 153.7 125 65.6
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.7e-35 152.9 114 65.8
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.7e-35 152.9 133 61.7
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 4.9e-35 151.4 117 65.8
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 6.4e-35 151.0 129 59.7
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 8.4e-35 150.6 133 63.9
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.1e-34 150.2 130 62.3
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 1.1e-34 150.2 114 67.5
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.9e-34 149.4 132 62.9
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.9e-34 149.4 133 57.9
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 1.9e-34 149.4 133 58.6
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 2.4e-34 149.1 113 66.4
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.4e-34 149.1 129 58.9
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.4e-34 149.1 132 59.1
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 3.2e-34 148.7 114 64.9
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 4.2e-34 148.3 135 64.4
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 5.4e-34 147.9 133 59.4
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 9.3e-34 147.1 128 64.1
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 9.3e-34 147.1 110 68.2
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.2e-33 146.7 114 68.4
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.6e-33 146.4 116 61.2
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.1e-33 146.0 130 60.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 2.1e-33 146.0 88 80.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 2.7e-33 145.6 116 62.9
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.7e-33 145.6 116 61.2
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.7e-33 145.6 120 60.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 4.6e-33 144.8 115 64.3
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 4.6e-33 144.8 145 55.9
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 6.0e-33 144.4 127 59.8
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 7.9e-33 144.1 121 59.5
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 7.9e-33 144.1 124 59.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.3e-32 143.3 114 67.5
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.3e-32 143.3 137 57.7
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.3e-32 143.3 125 60.8
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.3e-32 143.3 133 56.4
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.7e-32 142.9 124 61.3
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.7e-32 142.9 133 55.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 2.3e-32 142.5 114 66.7
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 3.0e-32 142.1 122 57.4
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.9e-32 141.7 142 54.2
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 3.9e-32 141.7 142 54.2
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 3.9e-32 141.7 114 61.4
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 5.1e-32 141.4 143 59.4
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 5.1e-32 141.4 127 57.5
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 6.6e-32 141.0 118 60.2
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 8.7e-32 140.6 131 55.7
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 8.7e-32 140.6 129 55.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.5e-31 139.8 122 56.6
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.5e-31 139.8 128 57.8
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 4.3e-31 138.3 140 54.3
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 4.3e-31 138.3 140 54.3
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 4.3e-31 138.3 133 55.6
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 5.6e-31 137.9 86 77.9
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 5.6e-31 137.9 142 54.2
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 7.4e-31 137.5 116 59.5
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 9.6e-31 137.1 112 58.9
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.3e-30 136.7 114 58.8
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 1.6e-30 136.3 115 58.3
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.6e-30 136.3 139 59.0
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.6e-30 136.3 126 56.3
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.1e-30 136.0 113 59.3
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.1e-30 136.0 128 55.5
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 4.8e-30 134.8 140 57.1
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 6.2e-30 134.4 125 56.0
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.4e-29 133.3 110 66.4
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 2.4e-29 132.5 146 51.4
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-29 132.1 132 60.6
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 5.3e-29 131.3 118 57.6
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.2e-28 130.2 131 60.3
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 1.5e-28 129.8 133 57.1
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 1.5e-28 129.8 116 56.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.6e-28 129.0 129 53.5
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 7.6e-28 127.5 127 53.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.7e-27 126.3 119 53.8
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 2.2e-27 125.9 124 53.2
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 2.2e-27 125.9 124 54.8
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 3.8e-27 125.2 145 52.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 8.4e-27 124.0 82 75.6
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 8.4e-27 124.0 123 52.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 5.5e-26 121.3 103 57.3
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.5e-25 118.6 83 66.3
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.8e-24 116.3 122 55.7
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.3e-24 115.9 158 44.9
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.0e-24 115.5 117 54.7
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 8.7e-24 114.0 152 43.4
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.9e-23 112.8 174 40.2
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.5e-23 112.5 117 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 3.3e-23 112.1 97 54.6
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.1e-22 109.4 123 48.0
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.8e-22 109.0 127 55.1
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 4.0e-21 105.1 116 50.9
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 4.0e-21 105.1 116 50.0
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 6.9e-21 104.4 68 67.6
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.5e-20 103.2 98 58.2
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.5e-20 103.2 108 53.7
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.5e-20 103.2 103 46.6
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 5.8e-20 101.3 110 55.5
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.7e-19 99.8 129 42.6
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 2.2e-19 99.4 110 54.5
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 2.9e-19 99.0 141 43.3
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 2.9e-19 99.0 129 41.9
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 3.2e-18 95.5 68 61.8
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 7.1e-18 94.4 67 64.2
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.9e-15 86.3 68 55.9
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 2.6e-12 75.9 82 53.7
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 2.5e-10 69.3 66 47.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 5.5e-10 68.2 51 52.9
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 6.7e-08 61.2 53 52.8
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 8.7e-08 60.8 78 48.7
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.6e-06 56.6 85 45.9


User provided reference genes

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