Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 1.6e-79 299.3 143 100.0
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 4.2e-56 221.5 145 73.8
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 4.2e-56 221.5 145 73.8
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.5e-56 221.1 145 73.8
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.5e-56 221.1 145 73.8
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 7.2e-56 220.7 142 71.1
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 8.2e-52 207.2 139 71.2
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 5.3e-51 204.5 141 68.8
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 7.2e-48 194.1 126 71.4
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 1.6e-47 193.0 137 66.4
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 1.3e-44 183.3 138 60.1
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 3.7e-44 181.8 145 60.0
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 1.4e-35 153.3 135 50.4
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 9.2e-35 150.6 135 48.9
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 4.5e-34 148.3 133 51.1
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 1.0e-33 147.1 133 51.9
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 8.6e-33 144.1 135 49.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 8.6e-33 144.1 147 49.7
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 1.9e-32 142.9 137 49.6
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.9e-32 142.9 137 49.6
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.9e-32 142.9 137 49.6
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.9e-32 142.9 97 69.1
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 4.3e-32 141.7 137 48.9
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 7.3e-32 141.0 133 48.9
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.3e-32 141.0 133 48.9
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 9.5e-32 140.6 146 47.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 1.2e-31 140.2 136 49.3
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 1.6e-31 139.8 133 48.9
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 2.8e-31 139.0 136 53.7
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.8e-31 139.0 134 48.5
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 3.6e-31 138.7 130 53.1
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-30 136.7 136 50.7
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.8e-30 136.3 97 64.9
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 2.3e-30 136.0 135 48.9
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.2e-30 134.8 141 48.2
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 6.8e-30 134.4 144 45.1
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 6.8e-30 134.4 134 48.5
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.2e-29 133.7 133 46.6
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 1.5e-29 133.3 141 47.5
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 1.5e-29 133.3 137 51.8
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 2.0e-29 132.9 97 63.9
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 5.8e-29 131.3 135 48.9
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 1.3e-28 130.2 135 45.9
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 1.3e-28 130.2 133 52.6
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 2.2e-28 129.4 131 48.9
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 4.9e-28 128.3 133 51.9
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 6.4e-28 127.9 143 44.8
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 6.4e-28 127.9 149 46.3
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 8.3e-28 127.5 133 51.1
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 1.1e-27 127.1 136 49.3
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.4e-27 126.7 118 55.1
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 1.4e-27 126.7 133 44.4
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 4.1e-27 125.2 135 42.2
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 4.1e-27 125.2 134 48.5
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 4.1e-27 125.2 133 44.4
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 2.0e-26 122.9 133 48.9
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 2.0e-26 122.9 139 48.2
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 6.0e-26 121.3 134 44.8
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 7.8e-26 120.9 134 46.3
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 1.7e-25 119.8 135 46.7
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.0e-25 119.0 135 45.2
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 3.0e-25 119.0 137 43.8
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 3.9e-25 118.6 140 48.6
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 3.9e-25 118.6 133 47.4
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.6e-25 117.9 135 45.9
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 6.6e-25 117.9 135 45.9
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 8.6e-25 117.5 140 40.7
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 3.3e-24 115.5 129 45.7
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 3.3e-24 115.5 118 44.1
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.3e-24 115.2 136 41.2
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 5.6e-24 114.8 135 43.0
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 1.2e-23 113.6 131 42.7
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 1.6e-23 113.2 129 46.5
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 2.1e-23 112.8 135 42.2
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 6.2e-23 111.3 132 43.9
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 6.2e-23 111.3 134 42.5
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 1.1e-22 110.5 107 51.4
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 1.8e-22 109.8 130 43.1
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 3.1e-22 109.0 119 48.7
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 4.0e-22 108.6 136 44.1
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 6.8e-22 107.8 136 43.4
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 8.9e-22 107.5 129 40.3
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 1.2e-21 107.1 127 45.7
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 1.2e-21 107.1 133 44.4
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 1.5e-21 106.7 131 42.7
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 3.4e-21 105.5 100 49.0
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 4.4e-21 105.1 132 42.4
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 4.4e-21 105.1 124 42.7
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 5.8e-21 104.8 129 43.4
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 7.5e-21 104.4 138 39.9
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.8e-21 104.0 129 42.6
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 9.8e-21 104.0 132 42.4
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.3e-20 103.6 133 44.4
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 1.3e-20 103.6 130 43.8
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.7e-20 103.2 130 36.9
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.7e-20 103.2 127 40.2
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 6.4e-20 101.3 116 44.8
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 6.4e-20 101.3 136 41.2
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.1e-19 100.5 113 45.1
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 1.4e-19 100.1 125 42.4
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 2.4e-19 99.4 141 37.6
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.0e-19 97.8 109 44.0
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 7.0e-19 97.8 147 38.1
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 9.2e-19 97.4 120 44.2
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 9.2e-19 97.4 125 40.8
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-18 97.1 113 43.4
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.2e-18 97.1 133 42.1
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.1e-18 96.3 145 40.7
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 2.7e-18 95.9 145 40.7
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 4.6e-18 95.1 138 39.9
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 6.0e-18 94.7 129 41.1
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 6.0e-18 94.7 138 34.1
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 6.6e-17 91.3 123 38.2
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 1.5e-16 90.1 132 36.4
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 1.5e-16 90.1 119 41.2
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 2.5e-16 89.4 107 42.1
Solyc01g060370.2 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.5e-16 89.4 58 65.5
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.3e-16 89.0 126 41.3
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 3.3e-16 89.0 126 41.3
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 2.1e-15 86.3 128 36.7
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 8.1e-15 84.3 132 39.4
Peaxi162Scf01016g00003 Petunia axillaris HOM05D000462 ORTHO05D005846 1.1e-14 84.0 99 44.4
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-14 83.6 132 37.1
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 1.4e-14 83.6 99 45.5
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 3.1e-14 82.4 132 36.4
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 6.8e-14 81.3 114 40.4
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.0e-13 79.7 99 48.5
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 3.4e-13 79.0 118 40.7
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.4e-13 78.6 132 35.6
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 4.4e-13 78.6 86 43.0
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.3e-12 77.0 140 35.0
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 2.2e-12 76.3 103 38.8
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 3.7e-12 75.5 100 39.0
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 6.4e-12 74.7 88 37.5
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 4.1e-11 72.0 118 38.1
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 3.5e-10 68.9 97 35.1
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.3e-09 66.2 81 42.0
Aqoxy5G02746 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.9e-08 63.2 62 51.6
SGA_v2.0_scaffold15G07217 Striga asiatica HOM05D000395 ORTHO05D000088 1.9e-08 63.2 90 36.7
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 5.6e-08 61.6 86 34.9
Aqoxy3G01422 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 1.2e-07 60.5 98 38.8
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 3.6e-07 58.9 46 56.5
SEGI_02922 Sequoiadendron giganteum HOM05D000823 ORTHO05D005846 4.7e-07 58.5 94 39.4
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 8.1e-07 57.8 87 35.6
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 1.4e-06 57.0 123 36.6
Nitab4.5_0005799g0040 Nicotiana tabacum HOM05D010896 ORTHO05D011162 1.8e-06 56.6 91 35.2
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.8e-06 56.6 97 30.9
Nitab4.5_0001401g0160 Nicotiana tabacum HOM05D000395 ORTHO05D000088 2.4e-06 56.2 104 34.6
AL7G18270 Arabidopsis lyrata HOM05D000823 ORTHO05D000088 5.2e-06 55.1 98 35.7
THA.LOC104803689 Tarenaya hassleriana HOM05D000823 ORTHO05D000088 5.2e-06 55.1 96 36.5


User provided reference genes

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