Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 7.3e-231 803.5 399 100.0
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 6.6e-192 674.1 355 94.9
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 4.8e-166 588.2 326 92.0
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.4e-149 533.5 355 78.9
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.3e-144 516.2 355 76.6
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 2.2e-131 473.0 379 69.1
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 4.3e-98 362.5 309 63.1
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 9.9e-95 351.3 396 52.5
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 4.9e-94 349.0 305 62.0
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 8.4e-94 348.2 318 58.5
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.5e-90 337.4 306 59.5
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 7.3e-90 335.1 333 56.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 9.6e-90 334.7 353 55.8
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.5e-87 327.4 367 52.9
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.6e-87 326.6 397 47.9
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 3.4e-87 326.2 407 46.7
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.9e-86 323.2 308 56.8
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 8.4e-86 321.6 397 47.1
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 6.0e-84 315.5 303 60.1
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 1.3e-83 314.3 378 49.5
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 8.7e-83 311.6 347 49.9
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.9e-82 310.5 302 58.3
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.5e-82 310.1 318 52.8
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 5.6e-82 308.9 331 52.3
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 7.3e-82 308.5 327 52.3
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 2.1e-81 307.0 339 50.4
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 2.8e-81 306.6 342 52.0
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 3.6e-81 306.2 378 49.7
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 4.0e-80 302.8 348 49.7
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 5.3e-80 302.4 387 47.5
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 2.0e-79 300.4 372 46.8
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 5.8e-79 298.9 339 51.0
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 7.6e-79 298.5 394 46.2
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 9.9e-79 298.1 316 51.9
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 1.3e-78 297.7 391 45.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 8.4e-78 295.0 378 47.1
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 8.4e-78 295.0 407 46.2
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.1e-77 294.7 412 44.2
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 3.2e-77 293.1 389 44.7
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 4.2e-77 292.7 472 39.6
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 3.5e-76 289.7 379 47.0
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.7e-75 287.3 389 44.2
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 3.9e-75 286.2 435 41.8
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 8.7e-75 285.0 381 43.6
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 1.1e-74 284.6 414 44.2
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 4.3e-74 282.7 491 40.9
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.6e-73 280.8 436 42.4
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 8.1e-73 278.5 471 41.8
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 2.4e-72 276.9 405 44.4
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 3.1e-72 276.6 431 42.9
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.0e-71 273.9 416 41.1
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 2.0e-71 273.9 433 42.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 2.0e-71 273.9 300 53.3
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.3e-70 271.2 445 41.8
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.7e-70 270.8 342 47.7
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.7e-70 270.8 358 44.7
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 2.9e-70 270.0 316 50.0
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 6.4e-70 268.9 425 40.7
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 1.1e-69 268.1 395 42.3
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.1e-69 268.1 359 44.8
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 1.4e-69 267.7 359 44.8
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 5.5e-69 265.8 447 39.4
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 9.3e-69 265.0 343 47.5
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 1.2e-68 264.6 416 42.5
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.1e-68 263.8 317 50.8
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.1e-68 263.8 317 50.8
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 2.1e-68 263.8 532 36.3
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.7e-68 263.5 320 48.4
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.7e-68 263.5 453 41.1
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.0e-67 261.5 274 57.3
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 1.3e-67 261.2 361 46.3
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.8e-67 260.8 345 44.9
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 3.9e-67 259.6 315 48.6
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.1e-67 259.2 305 48.9
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 1.1e-66 258.1 453 40.6
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.3e-65 254.6 420 41.2
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 3.7e-65 253.1 372 41.7
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 4.8e-65 252.7 360 44.7
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.8e-64 250.8 446 37.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 2.4e-64 250.4 350 44.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.9e-64 248.8 328 44.2
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 6.9e-64 248.8 368 44.0
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.2e-63 248.1 380 41.3
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.5e-63 247.7 368 42.1
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.2e-62 243.8 361 42.9
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.9e-61 240.7 367 41.7
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 7.1e-61 238.8 427 38.2
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.1e-61 238.8 306 45.4
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.5e-58 231.1 196 61.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 1.5e-55 221.1 223 55.6
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.3e-54 218.0 327 42.2
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.4e-53 214.5 249 47.8
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 9.3e-53 211.8 362 37.6
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.3e-51 207.2 562 32.7
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 3.9e-51 206.5 222 50.9
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.6e-49 201.1 149 69.8
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 8.2e-49 198.7 481 29.3
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-48 198.4 335 38.8
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 4.1e-48 196.4 487 29.6
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 4.5e-47 193.0 321 38.3
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-45 188.0 309 37.5
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.9e-45 187.6 295 39.7
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 4.6e-44 183.0 201 50.7
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 3.3e-42 176.8 154 52.6
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 6.9e-40 169.1 155 58.1
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.5e-39 167.9 153 60.1
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 5.0e-38 162.9 87 87.4
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 2.6e-34 150.6 309 35.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 7.4e-34 149.1 260 38.5
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.2e-31 141.7 139 54.0
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 4.5e-31 139.8 329 34.0
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 9.4e-29 132.1 301 33.2
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.4e-24 118.2 94 66.0
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 3.1e-24 117.1 109 60.6
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 4.1e-24 116.7 295 31.9
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.5e-23 113.6 92 60.9
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 3.2e-21 107.1 91 54.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.6e-18 97.4 78 55.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 3.7e-17 93.6 267 27.0
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 5.2e-11 73.2 64 62.5
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 2.8e-09 67.4 110 37.3


User provided reference genes

Program Settings