Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-142 509.6 240 100.0
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.0e-91 338.6 233 72.1
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.5e-77 293.5 215 68.8
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.3e-73 277.7 225 66.7
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-64 248.8 191 67.5
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 9.6e-61 237.7 220 62.3
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 6.9e-59 231.5 167 71.9
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.8e-51 206.8 180 63.9
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-50 203.8 208 56.2
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 7.6e-50 201.4 180 62.8
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.7e-49 200.3 223 54.3
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.3e-45 185.7 145 65.5
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.4e-43 179.9 169 58.0
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.1e-43 179.5 181 55.2
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.5e-34 149.1 223 45.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 4.5e-34 149.1 223 45.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.2e-33 146.7 225 44.0
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-31 140.2 154 54.5
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 6.7e-30 135.2 225 43.1
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 3.7e-28 129.4 193 46.1
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 4.5e-26 122.5 115 60.9
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.6e-26 121.7 115 61.7
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 1.1e-24 117.9 215 39.5
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 1.6e-23 114.0 214 39.3
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.6e-23 114.0 115 58.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.3e-22 110.9 228 41.2
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 5.1e-22 109.0 224 38.8
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.3e-21 106.3 212 38.2
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 7.4e-21 105.1 218 38.5
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.8e-20 103.2 232 38.8
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 6.3e-20 102.1 218 36.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 6.3e-20 102.1 225 36.0
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 1.2e-18 97.8 205 36.1
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.4e-18 96.3 135 47.4
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.0e-17 94.7 223 38.6
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.2e-17 93.6 63 65.1
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 2.9e-17 93.2 224 34.8
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 3.2e-16 89.7 193 35.2
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 7.2e-16 88.6 210 35.2
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 9.4e-16 88.2 221 37.1
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 9.4e-16 88.2 221 37.6
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 9.4e-16 88.2 204 39.2
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.2e-15 87.8 212 34.4
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 3.6e-15 86.3 229 35.8
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 6.1e-15 85.5 222 34.2
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.8e-14 84.0 210 36.2
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 5.1e-14 82.4 225 34.2
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 5.1e-14 82.4 213 33.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 5.1e-14 82.4 220 31.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 6.7e-14 82.0 219 34.7
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.6e-13 80.1 212 32.5
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 5.7e-13 79.0 119 47.1
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 7.4e-13 78.6 215 34.0
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 7.4e-13 78.6 204 36.8
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 9.7e-13 78.2 229 36.2
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.3e-12 77.8 208 32.2
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.7e-12 77.4 231 33.8
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.2e-12 77.0 212 33.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.2e-12 77.0 212 33.0
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 3.7e-12 76.3 200 33.5
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 6.3e-12 75.5 209 33.0
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 6.3e-12 75.5 207 33.8
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.4e-11 74.3 191 31.9
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.8e-11 73.9 230 33.0
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 6.9e-11 72.0 224 34.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 9.1e-11 71.6 223 34.5
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 9.1e-11 71.6 189 32.3
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.2e-10 71.2 191 33.0
Sopen04g005290 Solanum pennellii HOM05D000312 ORTHO05D000221 1.5e-10 70.9 103 43.7
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.6e-10 70.1 218 33.0
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.6e-10 70.1 224 33.5
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 3.4e-10 69.7 221 34.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 1.7e-09 67.4 225 30.2
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.7e-09 67.4 220 34.5
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 2.9e-09 66.6 219 33.3
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 3.8e-09 66.2 220 32.7
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 8.5e-09 65.1 222 34.7
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.9e-08 63.9 219 32.9
Solyc04g010140.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.2e-06 55.8 50 60.0


User provided reference genes

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