Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.6e-70 269.2 130 100.0
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 1.1e-63 246.5 127 92.1
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.0e-60 235.7 116 93.1
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 5.9e-57 224.2 113 92.0
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 5.9e-49 197.6 127 71.7
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 5.9e-49 197.6 122 76.2
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.3e-43 179.9 128 64.8
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.1e-42 174.9 114 68.4
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.0e-41 172.6 95 82.1
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.9e-39 166.0 114 66.7
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 1.2e-36 156.8 103 69.9
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 1.2e-36 156.8 123 62.6
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.9e-35 152.1 130 59.2
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.2e-33 146.7 110 59.1
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.0e-33 144.4 114 62.3
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 9.5e-31 137.1 113 58.4
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 2.8e-30 135.6 128 51.6
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 8.1e-30 134.0 128 50.8
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 8.9e-29 130.6 113 61.9
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 1.5e-28 129.8 121 52.1
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.0e-28 129.4 128 49.2
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 4.4e-28 128.3 119 52.9
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 2.9e-27 125.6 117 53.0
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.7e-27 125.2 120 50.0
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.7e-27 125.2 120 50.8
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.7e-27 125.2 120 50.8
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 4.9e-27 124.8 130 46.9
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 8.3e-27 124.0 124 48.4
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 8.3e-27 124.0 120 50.8
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 1.1e-26 123.6 115 53.0
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 1.4e-26 123.2 121 49.6
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 1.4e-26 123.2 126 49.2
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.9e-26 122.9 126 51.6
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 3.2e-26 122.1 123 48.8
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 3.2e-26 122.1 126 51.6
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 4.1e-26 121.7 124 46.8
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 5.4e-26 121.3 124 47.6
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 5.4e-26 121.3 128 46.9
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 1.2e-25 120.2 124 48.4
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 1.6e-25 119.8 119 49.6
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 1.6e-25 119.8 126 48.4
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 1.6e-25 119.8 125 49.6
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.1e-25 119.4 120 47.5
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.1e-25 119.4 128 46.9
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 3.5e-25 118.6 127 47.2
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 6.0e-25 117.9 126 46.8
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 1.0e-24 117.1 122 48.4
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.0e-24 117.1 126 49.2
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.0e-24 117.1 126 49.2
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.3e-24 116.7 129 49.6
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.0e-24 115.5 109 49.5
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 6.6e-24 114.4 122 46.7
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 6.6e-24 114.4 128 44.5
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 8.6e-24 114.0 117 48.7
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 8.6e-24 114.0 130 49.2
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 8.6e-24 114.0 120 50.8
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 1.1e-23 113.6 121 47.9
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.5e-23 113.2 120 50.0
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 2.5e-23 112.5 124 43.5
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 5.6e-23 111.3 130 43.1
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 5.6e-23 111.3 130 43.1
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 7.3e-23 110.9 109 49.5
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 7.3e-23 110.9 122 45.9
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 7.3e-23 110.9 123 46.3
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 7.3e-23 110.9 125 48.8
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 1.6e-22 109.8 119 46.2
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 1.6e-22 109.8 122 49.2
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.6e-22 109.8 120 45.0
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 2.1e-22 109.4 124 44.4
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 2.1e-22 109.4 125 45.6
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 3.6e-22 108.6 124 44.4
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 4.7e-22 108.2 119 45.4
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 4.7e-22 108.2 108 50.9
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 6.2e-22 107.8 123 48.0
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 8.1e-22 107.5 108 47.2
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 8.1e-22 107.5 113 47.8
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 1.1e-21 107.1 120 45.8
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.4e-21 105.9 126 43.7
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.0e-21 105.1 132 38.6
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 5.2e-21 104.8 122 41.8
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 8.9e-21 104.0 119 47.1
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 8.9e-21 104.0 105 49.5
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 2.0e-20 102.8 110 46.4
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 2.6e-20 102.4 110 42.7
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.2e-19 99.4 121 40.5
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 2.2e-19 99.4 124 47.6
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 1.1e-18 97.1 120 39.2
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.4e-18 96.7 124 37.9
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.4e-18 96.7 124 40.3
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.4e-18 95.9 127 40.2
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.6e-17 93.2 126 40.5
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.7e-17 92.4 128 39.1
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.6e-17 91.7 120 39.2
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.8e-17 90.9 121 41.3
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.3e-16 90.1 120 36.7
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 2.3e-16 89.4 122 42.6
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 3.9e-16 88.6 122 41.0
Nitab4.5_0000771g0200 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.1e-15 87.0 108 45.4
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 1.9e-15 86.3 119 37.8
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 1.9e-15 86.3 132 39.4
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 5.6e-15 84.7 111 33.3
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.1e-14 82.8 104 41.3
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.1e-14 82.8 89 48.3
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 6.2e-14 81.3 120 36.7
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 9.9e-12 73.9 105 33.3
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 9.9e-12 73.9 105 33.3
PGR031G2486 Punica granatum HOM05D023640 ORTHO05D019592 1.4e-10 70.1 97 38.1
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 2.1e-09 66.2 133 31.6
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 3.5e-09 65.5 124 34.7
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 4.6e-09 65.1 86 43.0
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 6.0e-09 64.7 104 31.7
Nitab4.5_0006691g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.0e-08 63.9 86 40.7
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 3.9e-08 62.0 128 30.5
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 6.6e-08 61.2 132 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 1.9e-07 59.7 104 29.8
AagrBONN_evm.TU.Sc2ySwM_344.1627 Anthoceros agrestis HOM05D032606 ORTHO05D007872 3.3e-07 58.9 109 29.4
PGR031G1100 Punica granatum HOM05D023640 ORTHO05D007872 3.3e-07 58.9 130 33.8
AagrBONN_evm.TU.Sc2ySwM_368.904 Anthoceros agrestis HOM05D032606 ORTHO05D007872 1.6e-06 56.6 113 28.3
TWI38G0054 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 6.2e-06 54.7 55 47.3


User provided reference genes

Program Settings