Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400040619 Solanum tuberosum HOM05D003785 ORTHO05D004179 1.6e-89 333.2 232 100.0
PGSC0003DMG400045527 Solanum tuberosum HOM05D003785 ORTHO05D004179 1.4e-53 213.8 115 96.5
CAN.G20.2 Capsicum annuum HOM05D003785 ORTHO05D004179 2.3e-43 179.9 111 85.6
PGSC0003DMG400008222 Solanum tuberosum HOM05D003785 ORTHO05D004179 3.0e-43 179.5 111 85.6
Solyc08g062950.4 Solanum lycopersicum HOM05D003785 ORTHO05D004179 1.1e-42 177.6 111 84.7
Sopen08g018500 Solanum pennellii HOM05D003785 ORTHO05D004179 1.1e-42 177.6 111 84.7
Peaxi162Scf00327g00049 Petunia axillaris HOM05D003785 ORTHO05D004179 7.4e-42 174.9 111 83.8
Nitab4.5_0006852g0080 Nicotiana tabacum HOM05D003785 ORTHO05D004179 1.2e-39 167.5 111 82.0
Gohir.D05G042900 Gossypium hirsutum HOM05D003785 ORTHO05D004179 3.5e-36 156.0 111 74.8
Manes.16G081600 Manihot esculenta HOM05D003785 ORTHO05D004179 1.3e-35 154.1 111 73.0
MD15G1057600 Malus domestica HOM05D003785 ORTHO05D004179 1.8e-35 153.7 112 71.4
MD02G1142400 Malus domestica HOM05D003785 ORTHO05D004179 3.0e-35 152.9 111 73.0
Gohir.A05G041200 Gossypium hirsutum HOM05D003785 ORTHO05D004179 3.9e-35 152.5 111 73.9
Gorai.009G044000 Gossypium raimondii HOM05D003785 ORTHO05D004179 3.9e-35 152.5 111 73.9
CsaV3_4G035740 Cucumis sativus L. HOM05D003785 ORTHO05D004179 8.7e-35 151.4 111 71.2
Thecc.09G056500 Theobroma cacao HOM05D003785 ORTHO05D004179 8.7e-35 151.4 111 73.0
ClCG05G017960 Citrullus lanatus HOM05D003785 ORTHO05D004179 1.1e-34 151.0 111 71.2
Dinv22883 Davidia involucrata HOM05D003785 ORTHO05D004179 1.5e-34 150.6 111 73.0
Duzib168G0901 Durio zibethinus HOM05D003785 ORTHO05D004179 1.5e-34 150.6 111 73.0
Oeu013996.1 Olea europaea HOM05D003785 ORTHO05D004179 1.9e-34 150.2 111 73.0
TPR.G3587 Trifolium pratense HOM05D003785 ORTHO05D004179 1.9e-34 150.2 111 71.2
Aqoxy7G04027 Aquilegia oxysepala HOM05D003785 ORTHO05D004179 2.5e-34 149.8 111 72.1
Lj7A265T34 Lonicera japonica HOM05D003785 ORTHO05D004179 2.5e-34 149.8 111 73.0
TWI34G0518 Tripterygium wilfordii HOM05D003785 ORTHO05D004179 2.5e-34 149.8 111 71.2
Hma1.2p1_0801F.1_g220215 Hydrangea macrophylla HOM05D003785 ORTHO05D004179 3.3e-34 149.4 111 69.4
Medtr3g104560 Medicago truncatula HOM05D003785 ORTHO05D004179 3.3e-34 149.4 111 70.3
Psat5g036240 Pisum sativum HOM05D003785 ORTHO05D004179 3.3e-34 149.4 111 70.3
Psat5g036360 Pisum sativum HOM05D003785 ORTHO05D004179 3.3e-34 149.4 111 70.3
Potri.018G062100 Populus trichocarpa HOM05D003785 ORTHO05D004179 3.3e-34 149.4 111 67.6
MELO3C016879.2 Cucumis melo HOM05D003785 ORTHO05D004179 4.3e-34 149.1 111 70.3
FvH4_2g31660 Fragaria vesca HOM05D003785 ORTHO05D004179 4.3e-34 149.1 111 70.3
FvH4_2g31680 Fragaria vesca HOM05D003785 ORTHO05D004179 4.3e-34 149.1 111 70.3
FAN24G3339 Fragaria x ananassa HOM05D003785 ORTHO05D004179 4.3e-34 149.1 111 70.3
FAN24G3396 Fragaria x ananassa HOM05D003785 ORTHO05D004179 4.3e-34 149.1 111 70.3
Lj1g0022483 Lotus japonicus HOM05D003785 ORTHO05D004179 4.3e-34 149.1 111 71.2
CSS0010882 Camellia sinensis var. sinensis HOM05D003785 ORTHO05D004179 5.6e-34 148.7 111 71.2
CSS0037804 Camellia sinensis var. sinensis HOM05D003785 ORTHO05D004179 5.6e-34 148.7 111 71.2
Lalb_Chr23g0267821 Lupinus albus HOM05D003785 ORTHO05D004179 5.6e-34 148.7 111 72.1
Prupe.1G410300 Prunus persica HOM05D003785 ORTHO05D004179 5.6e-34 148.7 111 69.4
PGR031G0962 Punica granatum HOM05D003785 ORTHO05D004179 5.6e-34 148.7 110 70.0
RcHm_v2.0_Chr6g0311161 Rosa chinensis HOM05D003785 ORTHO05D004179 5.6e-34 148.7 111 70.3
TWI34G0336 Tripterygium wilfordii HOM05D003785 ORTHO05D004179 5.6e-34 148.7 111 71.2
Glyma.04G052100 Glycine max HOM05D003785 ORTHO05D004179 7.4e-34 148.3 111 71.2
Lj5g0006518 Lotus japonicus HOM05D003785 ORTHO05D004179 7.4e-34 148.3 111 71.2
Phvul.009G078400 Phaseolus vulgaris HOM05D003785 ORTHO05D004179 7.4e-34 148.3 111 72.1
Potri.006G226700 Populus trichocarpa HOM05D003785 ORTHO05D004179 7.4e-34 148.3 111 70.3
Sabra06G0175400 Salix brachista HOM05D003785 ORTHO05D004179 7.4e-34 148.3 111 69.4
SalBow4G0514 Salvia bowleyana HOM05D003785 ORTHO05D004179 7.4e-34 148.3 111 69.4
AUR62039130 Chenopodium quinoa HOM05D003785 ORTHO05D004179 9.6e-34 147.9 111 66.7
Lsat_1_v5_gn_6_14580 Lactuca sativa HOM05D003785 ORTHO05D004179 9.6e-34 147.9 111 70.3
THA.LOC104803723 Tarenaya hassleriana HOM05D003785 ORTHO05D004179 9.6e-34 147.9 112 69.6
MD08G1064200 Malus domestica HOM05D003785 ORTHO05D004179 1.3e-33 147.5 111 67.6
Sed0009036 Sechium edule HOM05D003785 ORTHO05D004179 1.3e-33 147.5 111 70.3
Ciclev10025311m.g Citrus clementina HOM05D003785 ORTHO05D004179 1.6e-33 147.1 106 72.6
Glyma.06G052700 Glycine max HOM05D003785 ORTHO05D004179 1.6e-33 147.1 111 70.3
Prupe.1G410000 Prunus persica HOM05D003785 ORTHO05D004179 1.6e-33 147.1 111 68.5
VMungo1309G1608 Vigna mungo HOM05D003785 ORTHO05D004179 1.6e-33 147.1 111 71.2
Ciclev10007948m.g Citrus clementina HOM05D003785 ORTHO05D004179 2.1e-33 146.7 111 68.5
Migut.A00123 Erythranthe guttata HOM05D003785 ORTHO05D004179 2.1e-33 146.7 111 72.1
Migut.A00238 Erythranthe guttata HOM05D003785 ORTHO05D004179 2.1e-33 146.7 111 72.1
Glyma.17G227500 Glycine max HOM05D003785 ORTHO05D004179 2.8e-33 146.4 111 71.2
GSVIVG01035384001 Vitis vinifera HOM05D003785 ORTHO05D004179 3.7e-33 146.0 111 70.3
Cfa017968 Carpinus fangiana HOM05D003785 ORTHO05D004179 4.8e-33 145.6 111 68.5
CiPaw.15G037400 Carya illinoinensis HOM05D003785 ORTHO05D004179 4.8e-33 145.6 111 66.7
CANSAT25G1961 Cannabis sativa HOM05D003785 ORTHO05D004179 6.2e-33 145.2 111 68.5
QL02p000940 Quercus lobata HOM05D003785 ORTHO05D004179 6.2e-33 145.2 111 69.4
AT2G26170 Arabidopsis thaliana HOM05D003785 ORTHO05D004179 1.1e-32 144.4 111 69.4
HanXRQChr07g0207181 Helianthus annuus HOM05D003785 ORTHO05D004179 1.1e-32 144.4 111 64.0
Aa31LG5G9620 Aethionema arabicum HOM05D003785 ORTHO05D004179 1.8e-32 143.7 111 67.6
Cc08_g10820 Coffea canephora HOM05D003785 ORTHO05D004179 1.8e-32 143.7 111 70.3
CiPaw.16G027700 Carya illinoinensis HOM05D003785 ORTHO05D004179 2.4e-32 143.3 111 67.6
Ca_15823_v3 Cicer arietinum L. HOM05D003785 ORTHO05D004179 2.4e-32 143.3 111 68.5
Ca_15857_v3 Cicer arietinum L. HOM05D003785 ORTHO05D004179 2.4e-32 143.3 111 68.5
MBI04_g36909_MAGBIO Magnolia biondii HOM05D003785 ORTHO05D004179 2.4e-32 143.3 111 68.5
Medtr1g015860 Medicago truncatula HOM05D003785 ORTHO05D004179 3.1e-32 142.9 111 69.4
Ca_13154_v3 Cicer arietinum L. HOM05D003785 ORTHO05D004179 4.0e-32 142.5 115 66.1
Glyma.14G096900 Glycine max HOM05D003785 ORTHO05D004179 5.3e-32 142.1 111 68.5
Carub.0004s0602 Capsella rubella HOM05D003785 ORTHO05D004179 9.0e-32 141.4 111 68.5
VMungo0647G2359 Vigna mungo HOM05D003785 ORTHO05D004179 9.0e-32 141.4 111 69.4
AUR62009125 Chenopodium quinoa HOM05D003785 ORTHO05D004179 1.2e-31 141.0 111 64.9
Nn8g38808 Nelumbo nucifera HOM05D003785 ORTHO05D004179 1.2e-31 141.0 111 67.6
arahy.Tifrunner.gnm1.ann1.DB7AVX Arachis hypogaea HOM05D003785 ORTHO05D004179 1.5e-31 140.6 111 66.7
EL10Ac2g03833 Beta vulgaris HOM05D003785 ORTHO05D004179 1.5e-31 140.6 110 65.5
TAR624G0243 Trochodendron aralioides HOM05D003785 ORTHO05D004179 1.5e-31 140.6 111 66.7
arahy.Tifrunner.gnm1.ann1.QP0P3V Arachis hypogaea HOM05D003785 ORTHO05D004179 2.0e-31 140.2 111 66.7
Thhalv10001960m.g Eutrema salsugineum HOM05D003785 ORTHO05D004179 2.0e-31 140.2 111 66.7
PSO210G6363 Papaver somniferum HOM05D003785 ORTHO05D004179 2.0e-31 140.2 111 67.6
Rhsim11G0043000 Rhododendron simsii HOM05D003785 ORTHO05D004179 2.0e-31 140.2 113 68.1
ECA233G5588 Erigeron canadensis HOM05D003785 ORTHO05D004179 2.6e-31 139.8 111 64.9
PSO210G3545 Papaver somniferum HOM05D003785 ORTHO05D004179 2.6e-31 139.8 111 67.6
Psat6g021360 Pisum sativum HOM05D003785 ORTHO05D004179 2.6e-31 139.8 112 67.9
Oeu036326.1 Olea europaea HOM05D003785 ORTHO05D004179 3.4e-31 139.4 114 67.5
Cpa.g.sc7.164 Carica papaya HOM05D003785 ORTHO05D004179 4.5e-31 139.0 111 66.7
Phvul.001G037100 Phaseolus vulgaris HOM05D003785 ORTHO05D004179 4.5e-31 139.0 111 68.5
AL4G18610 Arabidopsis lyrata HOM05D003785 ORTHO05D004179 5.8e-31 138.7 111 67.6
TPR.G13077 Trifolium pratense HOM05D003785 ORTHO05D004179 5.8e-31 138.7 111 65.8
Prupe.1G410100 Prunus persica HOM05D003785 ORTHO05D004179 1.0e-30 137.9 111 63.1
SalBow2G2190 Salvia bowleyana HOM05D003785 ORTHO05D004179 1.0e-30 137.9 111 62.2
Os01g0701400 Oryza sativa ssp. japonica HOM05D003785 ORTHO05D004179 1.3e-30 137.5 111 62.2
CARHR114940 Cardamine hirsuta HOM05D003785 ORTHO05D004179 2.2e-30 136.7 111 65.8
FAN27G0642 Fragaria x ananassa HOM05D003785 ORTHO05D004179 2.2e-30 136.7 124 61.3
A03p27100 Brassica napus HOM05D003785 ORTHO05D004179 3.8e-30 136.0 111 65.8
BraA03t11923Z Brassica rapa HOM05D003785 ORTHO05D004179 3.8e-30 136.0 111 65.8
BcaC01g04895 Brassica carinata HOM05D003785 ORTHO05D004179 8.4e-30 134.8 111 65.8
C03p32550 Brassica napus HOM05D003785 ORTHO05D004179 8.4e-30 134.8 111 65.8
BolC3t15593H Brassica oleracea HOM05D003785 ORTHO05D004179 8.4e-30 134.8 111 65.8
BcaB01g03015 Brassica carinata HOM05D003785 ORTHO05D004179 2.5e-29 133.3 111 64.0
Os01g0701500 Oryza sativa ssp. japonica HOM05D003785 ORTHO05D004179 2.5e-29 133.3 111 62.2
PSO210G6906 Papaver somniferum HOM05D003785 ORTHO05D004179 4.2e-29 132.5 108 63.9
THA.LOC104804441 Tarenaya hassleriana HOM05D003785 ORTHO05D004179 5.5e-29 132.1 135 57.8
Os06g0565100 Oryza sativa ssp. japonica HOM05D003785 ORTHO05D004179 9.3e-29 131.3 103 65.0
Zm00001eb123090 Zea mays HOM05D003785 ORTHO05D004179 9.3e-29 131.3 111 58.6
arahy.Tifrunner.gnm1.ann1.PBH5UM Arachis hypogaea HOM05D003785 ORTHO05D004179 1.6e-28 130.6 112 59.8
arahy.Tifrunner.gnm1.ann1.VVP2QU Arachis hypogaea HOM05D003785 ORTHO05D004179 1.6e-28 130.6 112 59.8
Atru.chr3.955 Acer truncatum HOM05D001205 ORTHO05D004179 2.1e-28 130.2 106 65.1
Atru.chr3.967 Acer truncatum HOM05D003785 ORTHO05D004179 2.1e-28 130.2 106 65.1
ECA233G1458 Erigeron canadensis HOM05D003785 ORTHO05D004179 2.7e-28 129.8 111 61.3
MD15G1057500 Malus domestica HOM05D003785 ORTHO05D004179 2.7e-28 129.8 123 61.0
Sp4g06200 Schrenkiella parvula HOM05D003785 ORTHO05D004179 1.8e-27 127.1 111 61.3
Zm00001eb384100 Zea mays HOM05D003785 ORTHO05D004179 1.8e-27 127.1 105 61.0
SGA_v2.0_scaffold20G09215 Striga asiatica HOM05D003785 ORTHO05D004179 2.3e-27 126.7 111 61.3
FAN15G2296 Fragaria x ananassa HOM05D003785 ORTHO05D004179 3.0e-27 126.3 111 63.1
Hma1.2p1_3849F.1_g337750 Hydrangea macrophylla HOM05D003785 ORTHO05D004179 5.1e-27 125.6 107 63.6
CDE05G0916 Ceratophyllum demersum HOM05D003785 ORTHO05D004179 6.7e-27 125.2 111 55.9
MD15G1255800 Malus domestica HOM05D003785 ORTHO05D004179 6.7e-27 125.2 117 58.1
SEGI_39079 Sequoiadendron giganteum HOM05D003785 ORTHO05D004179 6.7e-27 125.2 111 62.2
PSO210G0597 Papaver somniferum HOM05D003785 ORTHO05D004179 8.7e-27 124.8 102 62.7
Ah.10g034170 Amaranthus hybridus HOM05D003785 ORTHO05D004179 2.2e-25 120.2 110 58.2
unitig_748.g7528 Utricularia gibba HOM05D003785 ORTHO05D004179 2.8e-25 119.8 111 57.7
PSO210G3243 Papaver somniferum HOM05D003785 ORTHO05D004179 3.7e-25 119.4 105 58.1
ATR0789G177 Amborella trichopoda HOM05D003785 ORTHO05D004179 3.1e-24 116.3 109 54.1
Haze_18163 Corylus avellana HOM05D003785 ORTHO05D004179 2.6e-23 113.2 122 56.6
DCAR_007732 Daucus carota HOM05D003785 ORTHO05D004179 2.6e-23 113.2 102 62.7
Ca_29587_v3 Cicer arietinum L. HOM05D003785 ORTHO05D004179 6.5e-22 108.6 88 67.0
Zm00001eb205110 Zea mays HOM05D003785 ORTHO05D004179 1.4e-21 107.5 106 52.8
Eucgr.C00665 Eucalyptus grandis HOM05D003785 ORTHO05D004179 9.4e-21 104.8 79 68.4
vmacro00129 Vaccinium macrocarpon HOM05D003785 ORTHO05D004179 2.1e-20 103.6 106 54.7
Os02g0221900 Oryza sativa ssp. japonica HOM05D003785 ORTHO05D004179 4.6e-20 102.4 98 52.0
AagrBONN_evm.TU.Sc2ySwM_228.5349 Anthoceros agrestis HOM05D003785 ORTHO05D004179 3.3e-18 96.3 111 46.8
ECA238G3995 Erigeron canadensis HOM05D000002 ORTHO05D004179 3.3e-18 96.3 110 48.2
Atru.chr7.1100 Acer truncatum HOM05D003785 ORTHO05D004179 4.3e-18 95.9 76 63.2
Hund19442 Selenicereus undatus HOM05D003785 ORTHO05D004179 2.8e-17 93.2 97 48.5
AagrBONN_evm.TU.Sc2ySwM_344.13 Anthoceros agrestis HOM05D003785 ORTHO05D004179 6.3e-17 92.0 108 46.3
CSS0022108 Camellia sinensis var. sinensis HOM05D003785 ORTHO05D004179 1.4e-16 90.9 111 53.2
Sc06g0000990 Simmondsia chinensis HOM05D003785 ORTHO05D004179 3.1e-16 89.7 80 62.5
Hma1.2p1_2973F.1_g331110 Hydrangea macrophylla HOM05D003785 ORTHO05D004179 5.3e-16 89.0 76 59.2
ECA233G0429 Erigeron canadensis HOM05D003785 ORTHO05D004179 9.1e-16 88.2 110 44.5
Hma1.2p1_2735F.1_g327680 Hydrangea macrophylla HOM05D003785 ORTHO05D004179 2.9e-14 83.2 76 59.2
SEGI_07489 Sequoiadendron giganteum HOM05D003785 ORTHO05D004179 2.9e-14 83.2 80 56.2
MD15G1256100 Malus domestica HOM05D003785 ORTHO05D004179 3.2e-13 79.7 70 62.9
Dinv28001 Davidia involucrata HOM05D003785 ORTHO05D004179 4.2e-13 79.3 48 81.2
Actinidia18178 Actinidia chinensis HOM05D003785 ORTHO05D004179 7.9e-12 75.1 85 48.2
Dinv28000 Davidia involucrata HOM05D003785 ORTHO05D004179 2.6e-10 70.1 46 76.1
SMO137G0369 Selaginella moellendorffii HOM05D003785 ORTHO05D004179 1.1e-08 64.7 108 32.4
PSO063G0115 Papaver somniferum HOM05D003785 ORTHO05D004179 5.3e-08 62.4 48 62.5
Actinidia22787 Actinidia chinensis HOM05D003785 ORTHO05D004179 7.7e-07 58.5 79 50.6
COL.COLO4_08752 Corchorus olitorius HOM05D003785 ORTHO05D004179 1.0e-06 58.2 36 77.8
Lj1g0014891 Lotus japonicus HOM05D000061 ORTHO05D000915 3.8e-06 56.2 111 31.5
Lalb_Chr10g0102921 Lupinus albus HOM05D000061 ORTHO05D000915 8.5e-06 55.1 87 35.6
Mapoly0003s0006 Marchantia polymorpha HOM05D000025 ORTHO05D011310 8.5e-06 55.1 107 30.8
Psat7g238680 Pisum sativum HOM05D000025 ORTHO05D000040 8.5e-06 55.1 118 34.7
GSVIVG01032871001 Vitis vinifera HOM05D000061 ORTHO05D000915 8.5e-06 55.1 86 32.6


User provided reference genes

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