Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.4e-63 243.4 115 100.0
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.4e-55 216.9 114 89.5
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 4.3e-51 204.5 114 85.1
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.9e-43 179.1 114 74.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.5e-43 178.7 114 77.2
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.8e-42 174.5 114 73.7
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.1e-41 171.8 114 72.8
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 9.6e-27 123.6 113 51.3
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 4.1e-25 118.2 114 53.5
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 9.0e-25 117.1 113 51.3
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.2e-24 116.7 113 53.1
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 3.4e-24 115.2 113 50.4
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.0e-23 113.6 113 49.6
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.3e-23 113.2 113 46.9
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.7e-23 112.8 113 50.4
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.7e-23 112.8 113 50.4
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.2e-23 112.5 109 49.5
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.0e-23 111.3 112 49.1
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-22 109.8 111 52.3
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.9e-22 109.4 113 45.1
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 7.2e-22 107.5 110 48.2
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 7.2e-22 107.5 121 43.8
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 9.3e-22 107.1 109 50.5
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.2e-21 106.7 109 52.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 2.7e-21 105.5 116 46.6
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.7e-21 105.5 115 44.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.5e-21 105.1 141 42.6
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 4.6e-21 104.8 113 49.6
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.6e-21 104.8 117 42.7
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.9e-21 104.0 113 50.4
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.0e-20 103.6 113 43.4
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.3e-20 103.2 113 46.9
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 2.3e-20 102.4 115 49.6
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 3.0e-20 102.1 109 47.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 3.9e-20 101.7 113 47.8
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 3.9e-20 101.7 117 41.9
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 5.1e-20 101.3 115 45.2
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 5.1e-20 101.3 117 46.2
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 6.7e-20 100.9 109 47.7
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 6.7e-20 100.9 109 47.7
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 6.7e-20 100.9 109 47.7
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 8.7e-20 100.5 109 46.8
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 8.7e-20 100.5 109 46.8
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 8.7e-20 100.5 109 47.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 8.7e-20 100.5 115 43.5
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-19 100.1 109 48.6
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.9e-19 99.4 113 45.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.3e-19 98.6 122 45.9
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.3e-19 98.6 115 43.5
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.3e-19 98.2 109 46.8
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 5.7e-19 97.8 109 45.0
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 2.2e-18 95.9 113 45.1
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.2e-18 95.9 117 41.0
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.2e-18 95.9 116 47.4
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 4.8e-18 94.7 109 45.0
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 4.8e-18 94.7 109 45.0
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 4.8e-18 94.7 110 43.6
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 4.8e-18 94.7 121 46.3
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 4.8e-18 94.7 120 40.8
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.8e-18 94.7 110 41.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.8e-18 94.7 110 41.8
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.3e-18 94.4 120 43.3
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.1e-17 93.6 110 44.5
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.1e-17 93.6 115 43.5
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.4e-17 93.2 111 40.5
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-17 92.8 120 42.5
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.4e-17 92.4 120 40.8
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 3.1e-17 92.0 120 40.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 5.3e-17 91.3 119 41.2
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.5e-16 89.7 109 43.1
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.5e-16 89.7 109 48.6
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.5e-16 89.7 137 39.4
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.6e-16 89.0 124 41.1
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 3.4e-16 88.6 114 39.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 3.4e-16 88.6 117 42.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.4e-16 88.6 113 40.7
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.5e-16 88.2 118 40.7
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.5e-16 88.2 124 40.3
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 7.7e-16 87.4 115 42.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.0e-15 87.0 114 39.5
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-15 87.0 124 40.3
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.0e-15 87.0 110 42.7
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.3e-15 86.7 131 42.7
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.7e-15 86.3 120 40.0
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 2.9e-15 85.5 119 41.2
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.8e-15 85.1 120 38.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 5.0e-15 84.7 127 41.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 6.5e-15 84.3 120 39.2
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.9e-14 82.8 124 41.9
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.2e-14 82.0 119 38.7
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.2e-14 81.6 123 41.5
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 4.2e-14 81.6 126 41.3
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.6e-13 79.7 131 38.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.1e-13 79.3 113 39.8
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 6.1e-13 77.8 132 37.1
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 6.1e-13 77.8 109 39.4
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.4e-12 76.6 72 47.2
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.8e-12 76.3 109 37.6
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.8e-12 76.3 119 34.5
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-12 75.9 125 37.6
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-12 75.9 125 37.6
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 3.0e-12 75.5 120 36.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.0e-12 75.5 116 35.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.0e-12 75.5 128 43.0
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 3.9e-12 75.1 115 40.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 6.7e-12 74.3 137 35.8
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.7e-12 74.3 136 38.2
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.1e-11 73.6 129 36.4
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 3.3e-11 72.0 130 35.4
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 4.3e-11 71.6 121 36.4
Sopen03g023610 Solanum pennellii HOM05D005167 ORTHO05D006312 5.7e-11 71.2 45 71.1
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 2.8e-10 68.9 119 37.0
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.8e-10 68.2 92 42.4
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.8e-10 68.2 92 42.4
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 8.2e-10 67.4 126 37.3
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.3e-09 64.7 83 39.8
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.2e-07 59.3 49 55.1
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.8e-07 58.5 131 32.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.9e-06 56.2 45 53.3
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.2e-06 55.1 49 51.0
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 4.2e-06 55.1 41 58.5
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 7.2e-06 54.3 116 29.3


User provided reference genes

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