Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 7.6e-138 493.8 245 100.0
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 1.4e-107 393.3 237 83.5
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 4.6e-103 378.3 237 81.4
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.4e-80 303.5 210 72.4
PGSC0003DMG400044972 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.4e-80 303.5 222 72.1
PGSC0003DMG400043134 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.2e-79 300.4 205 74.1
PGSC0003DMG400034786 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.8e-70 270.0 232 64.7
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.0e-62 242.7 169 70.4
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.0e-57 227.6 209 59.8
PGSC0003DMG400038550 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.1e-47 193.4 142 69.7
Sopen10g015150 Solanum pennellii HOM05D003426 ORTHO05D003816 2.8e-47 193.0 213 52.1
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 2.7e-42 176.4 190 52.1
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 4.7e-39 165.6 249 43.8
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.3e-38 163.3 249 44.2
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 3.1e-38 162.9 239 44.8
Nitab4.5_0002290g0120 Nicotiana tabacum HOM05D003426 ORTHO05D003816 6.8e-38 161.8 180 51.1
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 2.6e-37 159.8 247 44.1
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 1.3e-36 157.5 247 44.1
PGSC0003DMG400042655 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.3e-36 157.5 103 75.7
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 2.7e-34 149.8 224 40.6
PGSC0003DMG400041455 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.5e-32 144.1 225 40.0
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 7.3e-32 141.7 184 45.7
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 7.8e-26 121.7 244 36.5
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 1.7e-25 120.6 235 36.2
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 1.7e-25 120.6 235 36.2
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 3.0e-25 119.8 239 37.2
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 7.3e-24 115.2 204 34.8
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 1.2e-23 114.4 249 33.7
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.1e-23 113.6 211 35.5
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 3.6e-23 112.8 182 42.9
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 8.1e-23 111.7 245 35.5
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 2.4e-22 110.2 192 38.0
Sopen10g006430 Solanum pennellii HOM05D003426 ORTHO05D003816 4.0e-22 109.4 84 67.9
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 5.2e-22 109.0 227 34.8
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 8.9e-22 108.2 182 41.2
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 2.0e-21 107.1 203 36.5
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 2.6e-21 106.7 179 39.1
Solyc10g048110.1 Solanum lycopersicum HOM05D003426 ORTHO05D003816 3.4e-21 106.3 92 64.1
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 7.6e-21 105.1 193 36.8
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 9.9e-21 104.8 202 34.2
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 1.7e-20 104.0 224 34.8
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 1.7e-20 104.0 205 35.6
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 1.7e-20 104.0 201 34.3
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 2.2e-20 103.6 227 33.0
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 3.8e-20 102.8 193 34.2
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 6.4e-20 102.1 235 34.5
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 7.1e-19 98.6 208 34.6
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 9.2e-19 98.2 206 34.0
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 9.2e-19 98.2 187 32.6
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 4.6e-18 95.9 199 31.2
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 6.0e-18 95.5 178 38.2
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 1.0e-17 94.7 177 36.7
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 1.7e-17 94.0 205 34.1
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 1.7e-17 94.0 199 34.7
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 2.3e-17 93.6 184 33.2
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 2.3e-17 93.6 178 38.2
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 3.0e-17 93.2 187 34.8
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 3.0e-17 93.2 184 35.3
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 5.1e-17 92.4 236 33.5
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 8.7e-17 91.7 178 37.6
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 8.7e-17 91.7 182 34.6
PGSC0003DMG400045270 Solanum tuberosum HOM05D003426 ORTHO05D003816 8.7e-17 91.7 74 55.4
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.9e-16 90.5 204 30.4
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 1.9e-16 90.5 186 36.0
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 3.3e-16 89.7 173 35.8
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 4.3e-16 89.4 221 30.8
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 7.3e-16 88.6 147 39.5
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 9.6e-16 88.2 216 28.7
Solyc10g045030.1 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.2e-15 87.8 202 34.7
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 1.6e-15 87.4 203 31.0
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.6e-15 87.4 101 51.5
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 3.6e-15 86.3 254 29.5
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 4.7e-15 85.9 194 36.6
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 8.1e-15 85.1 204 33.3
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.4e-14 84.3 196 35.7
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 1.4e-14 84.3 207 33.3
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 1.4e-14 84.3 253 32.4
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 1.8e-14 84.0 207 29.5
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.8e-14 84.0 209 33.5
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 2.4e-14 83.6 251 29.1
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 3.1e-14 83.2 223 30.9
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 5.2e-14 82.4 198 32.8
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 5.2e-14 82.4 226 28.3
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 6.9e-14 82.0 165 35.8
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 6.9e-14 82.0 220 29.1
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 6.9e-14 82.0 178 32.0
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 9.0e-14 81.6 206 31.1
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 1.2e-13 81.3 215 32.6
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.2e-13 81.3 263 29.7
Solyc10g044984.1 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.5e-13 80.9 77 58.4
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 2.0e-13 80.5 244 30.7
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 2.0e-13 80.5 208 32.2
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.0e-13 80.5 211 27.0
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 4.4e-13 79.3 182 30.2
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 4.4e-13 79.3 248 27.4
Migut.B00537 Erythranthe guttata HOM05D000650 ORTHO05D000735 5.8e-13 79.0 204 30.4
MELO3C004128.2 Cucumis melo HOM05D003426 ORTHO05D003816 9.9e-13 78.2 218 29.4
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 9.9e-13 78.2 181 35.4
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 1.3e-12 77.8 222 28.8
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 1.7e-12 77.4 171 31.6
QL02p018769 Quercus lobata HOM05D003426 ORTHO05D003816 2.2e-12 77.0 172 33.7
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.9e-12 76.6 184 38.0
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 6.4e-12 75.5 199 29.1
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 1.1e-11 74.7 175 30.3
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 1.4e-11 74.3 206 29.1
Glyma.17G072800 Glycine max HOM05D003426 ORTHO05D003816 1.9e-11 73.9 143 39.2
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 1.9e-11 73.9 240 28.3
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 2.4e-11 73.6 172 30.8
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 3.2e-11 73.2 142 38.0
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 4.2e-11 72.8 175 29.7
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 5.4e-11 72.4 105 43.8
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 7.1e-11 72.0 167 33.5
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 7.1e-11 72.0 172 33.1
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 9.3e-11 71.6 206 26.7
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 9.3e-11 71.6 181 29.3
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.2e-10 71.2 270 25.6
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 1.2e-10 71.2 270 25.6
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 2.1e-10 70.5 189 28.0
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 2.1e-10 70.5 140 32.1
vmacro01873 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 2.1e-10 70.5 174 27.6
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 3.5e-10 69.7 155 30.3
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 4.6e-10 69.3 163 33.1
QL02p018764 Quercus lobata HOM05D003426 ORTHO05D003816 7.8e-10 68.6 164 28.7
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 1.0e-09 68.2 144 35.4
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 1.0e-09 68.2 270 27.0
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.0e-09 68.2 184 32.6
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 1.3e-09 67.8 193 31.6
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 2.3e-09 67.0 176 31.2
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 2.3e-09 67.0 146 32.9
CSS0012807 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 3.9e-09 66.2 176 25.6
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 5.1e-09 65.9 178 29.2
FAN20G2154 Fragaria x ananassa HOM05D003426 ORTHO05D007302 6.6e-09 65.5 163 31.9
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 6.6e-09 65.5 149 35.6
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 8.7e-09 65.1 175 30.3
FAN15G2135 Fragaria x ananassa HOM05D000650 ORTHO05D007302 8.7e-09 65.1 209 29.7
Hund02984 Selenicereus undatus HOM05D016866 ORTHO05D015160 8.7e-09 65.1 242 27.3
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 1.1e-08 64.7 155 31.6
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 1.5e-08 64.3 139 25.9
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 1.5e-08 64.3 100 40.0
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.5e-08 64.3 74 44.6
FAN24G3507 Fragaria x ananassa HOM05D000650 ORTHO05D007302 1.9e-08 63.9 161 29.2
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 1.9e-08 63.9 228 26.8
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 2.5e-08 63.5 106 38.7
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.5e-08 63.5 168 26.8
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 3.3e-08 63.2 170 31.2
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 4.3e-08 62.8 155 29.0
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 4.3e-08 62.8 156 26.9
SalBow6G1286 Salvia bowleyana HOM05D000650 ORTHO05D007302 4.3e-08 62.8 173 32.4
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 4.3e-08 62.8 136 31.6
FvH4_2g11450 Fragaria vesca HOM05D000650 ORTHO05D007302 7.3e-08 62.0 160 31.2
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 7.3e-08 62.0 176 26.1
Glyma.08G066700 Glycine max HOM05D000650 ORTHO05D007302 9.6e-08 61.6 141 29.1
TPR.G24886 Trifolium pratense HOM05D003426 ORTHO05D003816 9.6e-08 61.6 154 32.5
vmacro01872 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 9.6e-08 61.6 176 30.1
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 9.6e-08 61.6 154 27.9
Glyma.17G193101 Glycine max HOM05D003426 ORTHO05D003816 1.3e-07 61.2 100 43.0
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 1.6e-07 60.8 216 27.3
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 1.6e-07 60.8 171 27.5
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 2.1e-07 60.5 216 27.3
Prupe.8G073000 Prunus persica HOM05D000650 ORTHO05D007302 2.8e-07 60.1 155 28.4
Sc18g0002970 Simmondsia chinensis HOM05D003426 ORTHO05D003816 2.8e-07 60.1 135 28.1
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 3.6e-07 59.7 217 27.2
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 3.6e-07 59.7 171 25.7
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 4.8e-07 59.3 148 31.8
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 4.8e-07 59.3 148 31.8
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 4.8e-07 59.3 155 28.4
Peaxi162Scf00003g03237 Petunia axillaris HOM05D021013 ORTHO05D007302 6.2e-07 58.9 135 31.1
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 8.1e-07 58.5 174 28.2
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.1e-06 58.2 215 27.4
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 1.4e-06 57.8 157 26.1
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.8e-06 57.4 168 28.6
Sed0007563 Sechium edule HOM05D003426 ORTHO05D003816 2.4e-06 57.0 179 29.1
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 3.1e-06 56.6 35 60.0
AUR62032422 Chenopodium quinoa HOM05D016866 ORTHO05D003816 3.1e-06 56.6 214 25.2
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 4.0e-06 56.2 146 27.4
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 4.0e-06 56.2 174 26.4
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 5.3e-06 55.8 101 41.6
Lsat_1_v5_gn_5_90301 Lactuca sativa HOM05D003426 ORTHO05D003816 5.3e-06 55.8 138 29.0
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 5.3e-06 55.8 67 46.3
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 6.9e-06 55.5 239 25.1
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 9.0e-06 55.1 145 32.4
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 9.0e-06 55.1 105 34.3
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 9.0e-06 55.1 215 24.7
SGA_v2.0_scaffold12G06013 Striga asiatica HOM05D003426 ORTHO05D003816 9.0e-06 55.1 88 38.6
SGA_v2.0_scaffold1435G53950 Striga asiatica HOM05D003426 ORTHO05D003816 9.0e-06 55.1 88 38.6


User provided reference genes

Program Settings