Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400039889 Solanum tuberosum HOM05D000613 ORTHO05D000446 6.1e-52 207.2 105 100.0
PGSC0003DMG400044453 Solanum tuberosum HOM05D000613 ORTHO05D000446 1.0e-38 163.3 105 78.1
PGSC0003DMG400046917 Solanum tuberosum HOM05D000613 ORTHO05D000446 4.2e-37 157.9 102 76.5
PGSC0003DMG400040261 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.6e-36 154.8 102 77.5
Solyc11g061870.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 3.0e-35 151.8 105 74.3
PGSC0003DMG400037166 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.0e-35 151.8 102 74.5
PGSC0003DMG400038422 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.3e-34 148.3 105 72.4
Solyc11g061830.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 5.7e-34 147.5 105 71.4
Sopen11g009990 Solanum pennellii HOM05D000613 ORTHO05D000446 7.4e-34 147.1 105 72.4
PGSC0003DMG400039644 Solanum tuberosum HOM05D000613 ORTHO05D000446 7.4e-34 147.1 105 70.5
PGSC0003DMG400039977 Solanum tuberosum HOM05D000613 ORTHO05D000446 9.7e-34 146.7 105 72.4
Solyc11g061900.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.7e-33 146.0 105 71.4
PGSC0003DMG400037106 Solanum tuberosum HOM05D000613 ORTHO05D000446 2.2e-33 145.6 105 71.4
Solyc11g061855.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 2.8e-33 145.2 105 71.4
Solyc11g018855.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 6.3e-33 144.1 105 71.4
Solyc11g150109.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 6.3e-33 144.1 105 71.4
Solyc11g063710.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 7.0e-32 140.6 105 70.5
PGSC0003DMG400039211 Solanum tuberosum HOM05D000613 ORTHO05D000446 9.1e-32 140.2 105 69.5
PGSC0003DMG400043062 Solanum tuberosum HOM05D000613 ORTHO05D000446 9.1e-32 140.2 98 72.4
PGSC0003DMG400035881 Solanum tuberosum HOM05D000613 ORTHO05D000446 1.2e-31 139.8 96 72.9
Solyc11g061810.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.6e-31 139.4 105 68.6
PGSC0003DMG400041395 Solanum tuberosum HOM05D000613 ORTHO05D000446 2.6e-31 138.7 96 72.9
Solyc11g020380.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 3.5e-31 138.3 105 67.6
Solyc11g063690.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 3.5e-31 138.3 105 68.6
PGSC0003DMG400046019 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.5e-31 138.3 105 66.7
Solyc11g019890.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 4.5e-31 137.9 105 66.7
PGSC0003DMG400045451 Solanum tuberosum HOM05D000613 ORTHO05D000446 4.5e-31 137.9 100 72.0
Solyc08g061690.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 5.9e-31 137.5 105 65.7
PGSC0003DMG400045608 Solanum tuberosum HOM05D000613 ORTHO05D000446 5.9e-31 137.5 94 73.4
Solyc11g150125.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 2.9e-30 135.2 99 69.7
Solyc11g020507.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 5.0e-30 134.4 105 65.7
Solyc11g063740.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 5.0e-30 134.4 105 67.6
PGSC0003DMG400041388 Solanum tuberosum HOM05D000613 ORTHO05D000446 1.9e-29 132.5 98 68.4
PGSC0003DMG400038470 Solanum tuberosum HOM05D000613 ORTHO05D000446 7.2e-29 130.6 105 63.8
Solyc08g061755.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 9.4e-29 130.2 105 62.9
PGSC0003DMG400045315 Solanum tuberosum HOM05D000613 ORTHO05D000446 1.2e-28 129.8 94 71.3
Solyc08g061680.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.6e-28 129.4 102 64.7
PGSC0003DMG400026772 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.6e-28 128.3 105 63.8
PGSC0003DMG400035835 Solanum tuberosum HOM05D000613 ORTHO05D000446 5.7e-26 120.9 93 66.7
PGSC0003DMG400040842 Solanum tuberosum HOM05D000613 ORTHO05D000446 9.7e-26 120.2 90 68.9
Solyc11g150121.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.3e-25 119.8 102 61.8
Solyc11g019860.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 3.7e-25 118.2 87 69.0
PGSC0003DMG400040479 Solanum tuberosum HOM05D000613 ORTHO05D000446 6.3e-25 117.5 85 68.2
Solyc11g150108.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.2e-23 113.2 87 65.5
Solyc08g061695.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.9e-21 105.9 87 63.2
PGSC0003DMG400044956 Solanum tuberosum HOM05D000613 ORTHO05D000446 1.6e-20 102.8 73 71.2
Solyc11g028213.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 6.8e-19 97.4 105 57.1
Sopen00g005920 Solanum pennellii HOM05D000613 ORTHO05D000446 6.8e-19 97.4 75 66.7
PGSC0003DMG400037891 Solanum tuberosum HOM05D000613 ORTHO05D000446 6.8e-19 97.4 75 66.7
PGSC0003DMG400043272 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.4e-18 95.1 66 71.2
PGSC0003DMG400034593 Solanum tuberosum HOM05D000613 ORTHO05D000446 1.7e-17 92.8 95 53.7
Solyc11g020437.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.4e-16 89.7 83 59.0
CAN.G719.2 Capsicum annuum HOM05D000613 ORTHO05D000446 2.4e-16 89.0 94 53.2
Solyc11g020433.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 3.1e-16 88.6 75 60.0
Solyc11g061785.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 4.1e-16 88.2 105 51.4
CAN.G869.14 Capsicum annuum HOM05D000613 ORTHO05D000446 9.1e-16 87.0 94 51.1
Peaxi162Scf00016g00911 Petunia axillaris HOM05D000613 ORTHO05D000446 4.5e-15 84.7 104 47.1
Peaxi162Scf00016g00945 Petunia axillaris HOM05D000613 ORTHO05D000446 4.5e-15 84.7 98 50.0
Peaxi162Scf00209g00126 Petunia axillaris HOM05D000613 ORTHO05D000446 3.8e-14 81.6 104 46.2
Nitab4.5_0008989g0060 Nicotiana tabacum HOM05D000613 ORTHO05D000446 4.2e-13 78.2 103 44.7
PGSC0003DMG400036656 Solanum tuberosum HOM05D000613 ORTHO05D000446 4.2e-13 78.2 105 45.7
PGSC0003DMG400047106 Solanum tuberosum HOM05D000613 ORTHO05D000446 2.1e-12 75.9 53 73.6
Solyc11g061813.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 8.0e-12 73.9 64 60.9
vmacro19439 Vaccinium macrocarpon HOM05D000613 ORTHO05D000446 1.8e-11 72.8 96 44.8
Nitab4.5_0011558g0010 Nicotiana tabacum HOM05D000613 ORTHO05D000446 3.0e-11 72.0 87 47.1
CAN.G780.5 Capsicum annuum HOM05D000613 ORTHO05D000446 5.2e-11 71.2 94 46.8
Sc08g0000320 Simmondsia chinensis HOM05D000613 ORTHO05D000446 4.4e-10 68.2 95 41.1
Dinv42090 Davidia involucrata HOM05D000613 ORTHO05D000446 2.2e-09 65.9 104 39.4
PGR083G0907 Punica granatum HOM05D000613 ORTHO05D000446 2.8e-09 65.5 100 41.0
Oeu010508.1 Olea europaea HOM05D000613 ORTHO05D000446 6.3e-09 64.3 103 38.8
TAR628G1523 Trochodendron aralioides HOM05D000613 ORTHO05D000446 6.3e-09 64.3 96 40.6
TWI09G1353 Tripterygium wilfordii HOM05D000613 ORTHO05D000446 1.8e-08 62.8 97 40.2
Aa31LG8G10180 Aethionema arabicum HOM05D000613 ORTHO05D000446 2.4e-08 62.4 100 39.0
PGSC0003DMG400036530 Solanum tuberosum HOM05D000613 ORTHO05D000446 2.4e-08 62.4 49 65.3
Solyc11g030557.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 3.1e-08 62.0 50 62.0
PGSC0003DMG400000957 Solanum tuberosum HOM05D000613 ORTHO05D000446 3.1e-08 62.0 102 37.3
Ca_09768_v3 Cicer arietinum L. HOM05D000613 ORTHO05D000446 4.1e-08 61.6 98 41.8
Gohir.D08G077700 Gossypium hirsutum HOM05D000613 ORTHO05D000446 4.1e-08 61.6 93 43.0
Gorai.004G082600 Gossypium raimondii HOM05D000613 ORTHO05D000446 4.1e-08 61.6 93 43.0
TWI53G1481 Tripterygium wilfordii HOM05D000613 ORTHO05D000446 4.1e-08 61.6 95 41.1
TAR365G0724 Trochodendron aralioides HOM05D000613 ORTHO05D000446 4.1e-08 61.6 104 39.4
CSS0048745 Camellia sinensis var. sinensis HOM05D000613 ORTHO05D000446 5.4e-08 61.2 100 39.0
Cc02_g17870 Coffea canephora HOM05D000613 ORTHO05D000446 7.0e-08 60.8 92 41.3
Gohir.D11G126700 Gossypium hirsutum HOM05D000613 ORTHO05D000446 7.0e-08 60.8 93 41.9
Gorai.007G135400 Gossypium raimondii HOM05D000613 ORTHO05D000446 7.0e-08 60.8 93 41.9
Medtr1g072540 Medicago truncatula HOM05D000613 ORTHO05D000446 7.0e-08 60.8 93 44.1
Oeu047880.1 Olea europaea HOM05D000613 ORTHO05D000446 7.0e-08 60.8 94 41.5
PGSC0003DMG400034473 Solanum tuberosum HOM05D000613 ORTHO05D000446 7.0e-08 60.8 48 66.7
Duzib133G0725 Durio zibethinus HOM05D000613 ORTHO05D000446 9.2e-08 60.5 93 40.9
Gohir.A11G121500 Gossypium hirsutum HOM05D000613 ORTHO05D000446 9.2e-08 60.5 93 41.9
Hma1.2p1_0066F.1_g036720 Hydrangea macrophylla HOM05D000613 ORTHO05D000446 9.2e-08 60.5 96 38.5
CiPaw.02G092100 Carya illinoinensis HOM05D000613 ORTHO05D000446 1.2e-07 60.1 96 37.5
Gohir.A08G069400 Gossypium hirsutum HOM05D000613 ORTHO05D000446 1.2e-07 60.1 91 42.9
Oeu006220.1 Olea europaea HOM05D000613 ORTHO05D000446 1.2e-07 60.1 93 41.9
MD13G1182800 Malus domestica HOM05D000613 ORTHO05D000446 1.6e-07 59.7 92 35.9
Atru.chr5.2944 Acer truncatum HOM05D000613 ORTHO05D000446 2.0e-07 59.3 103 39.8
Nitab4.5_0000759g0070 Nicotiana tabacum HOM05D000613 ORTHO05D000446 2.0e-07 59.3 102 36.3
Cfa015579 Carpinus fangiana HOM05D000613 ORTHO05D000446 2.7e-07 58.9 96 38.5
Phvul.007G170100 Phaseolus vulgaris HOM05D000613 ORTHO05D000446 2.7e-07 58.9 97 40.2
vmacro02555 Vaccinium macrocarpon HOM05D000613 ORTHO05D000446 2.7e-07 58.9 93 43.0
CSS0018660 Camellia sinensis var. sinensis HOM05D000613 ORTHO05D000446 3.5e-07 58.5 96 43.8
Ciclev10021361m.g Citrus clementina HOM05D000613 ORTHO05D000446 3.5e-07 58.5 94 38.3
Duzib212G0212 Durio zibethinus HOM05D000613 ORTHO05D000446 3.5e-07 58.5 100 38.0
Glyma.02G148600 Glycine max HOM05D000613 ORTHO05D000446 3.5e-07 58.5 93 39.8
Lj5g0025235 Lotus japonicus HOM05D000613 ORTHO05D000446 4.5e-07 58.2 91 40.7
QL12p022512 Quercus lobata HOM05D000613 ORTHO05D000446 4.5e-07 58.2 91 39.6
Solyc11g019880.3 Solanum lycopersicum HOM05D000613 ORTHO05D000446 4.5e-07 58.2 45 64.4
Psat3g125200 Pisum sativum HOM05D000613 ORTHO05D000446 5.9e-07 57.8 98 37.8
Psat3g125360 Pisum sativum HOM05D000613 ORTHO05D000446 5.9e-07 57.8 94 38.3
Solyc11g061840.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 5.9e-07 57.8 44 68.2
Thecc.01G282600 Theobroma cacao HOM05D000613 ORTHO05D000446 5.9e-07 57.8 93 40.9
TPR.G1569 Trifolium pratense HOM05D000613 ORTHO05D000446 5.9e-07 57.8 98 39.8
VMungo0720G2673 Vigna mungo HOM05D000613 ORTHO05D000446 5.9e-07 57.8 98 38.8
COL.COLO4_09130 Corchorus olitorius HOM05D000613 ORTHO05D000446 7.7e-07 57.4 93 39.8
Gorai.007G147200 Gossypium raimondii HOM05D000613 ORTHO05D000446 1.0e-06 57.0 94 40.4
Lsat_1_v5_gn_8_55941 Lactuca sativa HOM05D000613 ORTHO05D000446 1.0e-06 57.0 91 39.6
Manes.15G022800 Manihot esculenta HOM05D000613 ORTHO05D000446 1.0e-06 57.0 101 37.6
PSO407G0415 Papaver somniferum HOM05D000613 ORTHO05D000446 1.0e-06 57.0 100 38.0
Solyc09g064910.1 Solanum lycopersicum HOM05D000613 ORTHO05D000446 1.0e-06 57.0 106 34.0
Gohir.D11G137366 Gossypium hirsutum HOM05D000613 ORTHO05D000446 1.3e-06 56.6 93 40.9
Atru.chr5.2946 Acer truncatum HOM05D000613 ORTHO05D000446 1.7e-06 56.2 89 43.8
ECA236G0106 Erigeron canadensis HOM05D000613 ORTHO05D000446 1.7e-06 56.2 91 38.5
Glyma.10G025300 Glycine max HOM05D000613 ORTHO05D000446 1.7e-06 56.2 95 38.9
QL06p005289 Quercus lobata HOM05D000613 ORTHO05D000446 1.7e-06 56.2 95 36.8
THA.LOC104820104 Tarenaya hassleriana HOM05D000613 ORTHO05D000446 1.7e-06 56.2 106 35.8
TWI14G1291 Tripterygium wilfordii HOM05D000613 ORTHO05D000446 1.7e-06 56.2 93 38.7
CAN.G609.10 Capsicum annuum HOM05D000613 ORTHO05D000446 2.3e-06 55.8 102 33.3
Prupe.1G150800 Prunus persica HOM05D000613 ORTHO05D000446 2.3e-06 55.8 93 36.6
Prupe.8G243600 Prunus persica HOM05D000613 ORTHO05D000446 2.3e-06 55.8 93 40.9
Thecc.02G302400 Theobroma cacao HOM05D000613 ORTHO05D000446 2.3e-06 55.8 93 41.9
Thecc.04G221200 Theobroma cacao HOM05D000613 ORTHO05D000446 2.3e-06 55.8 96 37.5
Actinidia00501 Actinidia chinensis HOM05D000613 ORTHO05D000446 2.9e-06 55.5 100 38.0
AL3G38310 Arabidopsis lyrata HOM05D000613 ORTHO05D000446 2.9e-06 55.5 101 39.6
A01p31430 Brassica napus HOM05D000613 ORTHO05D000446 2.9e-06 55.5 100 37.0
BraA01t03269Z Brassica rapa HOM05D000613 ORTHO05D000446 2.9e-06 55.5 100 37.0
CiPaw.01G159700 Carya illinoinensis HOM05D000613 ORTHO05D000446 2.9e-06 55.5 92 37.0
DCAR_002745 Daucus carota HOM05D000613 ORTHO05D000446 2.9e-06 55.5 103 38.8
MD16G1183400 Malus domestica HOM05D000613 ORTHO05D000446 2.9e-06 55.5 92 35.9
Solyc11g020367.1 Solanum lycopersicum HOM05D042016 ORTHO05D000446 2.9e-06 55.5 83 39.8
Sopen09g026610 Solanum pennellii HOM05D000613 ORTHO05D000446 2.9e-06 55.5 102 34.3
Sopen11g023700 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-06 55.5 36 77.8
Ah.07g205600 Amaranthus hybridus HOM05D000613 ORTHO05D000446 3.8e-06 55.1 94 38.3
AT3G23630 Arabidopsis thaliana HOM05D000613 ORTHO05D000446 3.8e-06 55.1 102 39.2
Nitab4.5_0001028g0160 Nicotiana tabacum HOM05D000613 ORTHO05D000446 3.8e-06 55.1 102 33.3
Oeu010297.1 Olea europaea HOM05D000613 ORTHO05D000446 3.8e-06 55.1 105 39.0
Lalb_Chr02g0142841 Lupinus albus HOM05D000613 ORTHO05D000446 5.0e-06 54.7 101 35.6
Sed0020951 Sechium edule HOM05D000613 ORTHO05D000446 5.0e-06 54.7 91 38.5
Aqoxy2G03260 Aquilegia oxysepala HOM05D000613 ORTHO05D000446 6.6e-06 54.3 96 36.5
AL6G30400 Arabidopsis lyrata HOM05D000613 ORTHO05D000446 6.6e-06 54.3 99 38.4
Carub.0006s1736 Capsella rubella HOM05D000613 ORTHO05D000446 6.6e-06 54.3 99 36.4
Sed0000411 Sechium edule HOM05D000613 ORTHO05D000446 6.6e-06 54.3 95 40.0
C01p40060 Brassica napus HOM05D000613 ORTHO05D000446 8.6e-06 53.9 100 37.0
BolC1t03962H Brassica oleracea HOM05D000613 ORTHO05D000446 8.6e-06 53.9 100 37.0
DCAR_018410 Daucus carota HOM05D000613 ORTHO05D000446 8.6e-06 53.9 93 39.8
Lalb_Chr21g0306511 Lupinus albus HOM05D000613 ORTHO05D000446 8.6e-06 53.9 100 36.0
Manes.03G185000 Manihot esculenta HOM05D000613 ORTHO05D000446 8.6e-06 53.9 97 38.1
Nitab4.5_0002386g0030 Nicotiana tabacum HOM05D000613 ORTHO05D000446 8.6e-06 53.9 102 32.4
GSVIVG01011107001 Vitis vinifera HOM05D000613 ORTHO05D000446 8.6e-06 53.9 92 37.0


User provided reference genes

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